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Aliases for BORCS5 Gene

Aliases for BORCS5 Gene

  • BLOC-1 Related Complex Subunit 5 2 3 5
  • Myrlysin 2 3 4
  • Loss Of Heterozygosity, 12, Chromosomal Region 1 2 3
  • Myristoylated Lysosomal Protein 3 4
  • LOH12CR1 3 4
  • Loss Of Heterozygosity 12 Chromosomal Region 1 Protein 3
  • Loss Of Heterozygosity 12 Chromosomal Region 1 4
  • BLOC-1-Related Complex Subunit 5 3
  • LOH1CR12 3

External Ids for BORCS5 Gene

Previous HGNC Symbols for BORCS5 Gene

  • LOH12CR1

Summaries for BORCS5 Gene

GeneCards Summary for BORCS5 Gene

BORCS5 (BLOC-1 Related Complex Subunit 5) is a Protein Coding gene.

UniProtKB/Swiss-Prot for BORCS5 Gene

  • As part of the BORC complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, the BORC complex may recruit ARL8B and couple lysosomes to microtubule plus-end-directed kinesin motor. Thereby, it may indirectly play a role in cell spreading and motility.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BORCS5 Gene

Genomics for BORCS5 Gene

Regulatory Elements for BORCS5 Gene

Enhancers for BORCS5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F012439 1.6 FANTOM5 Ensembl ENCODE 19.3 +84.9 84900 5.9 HDGF PKNOX1 ARID4B YY1 SLC30A9 GATA2 FOS NFYC REST KAT8 BORCS5 DUSP16 DDX47 ENSG00000240424 CDKN1B CREBL2 APOLD1 BCL2L14 GPR19 GC12P012450
GH12F012448 1.7 FANTOM5 Ensembl ENCODE 9.4 +93.1 93112 3.2 PKNOX1 ATF1 MLX ARID4B DMAP1 YY1 SLC30A9 SP5 NFYC MXD4 DUSP16 CREBL2 ENSG00000240424 ENSG00000255670 GPR19 BORCS5 BCL2L14 GC12P012450 GC12P012411
GH12F012733 1.6 FANTOM5 Ensembl ENCODE 8.6 +378.5 378487 4.9 HDGF PKNOX1 SIN3A FEZF1 ZNF2 ZNF48 YY1 ZNF121 GATA2 ZNF207 CDKN1B APOLD1 DDX47 BORCS5 DUSP16 GPR19 GC12M012732 GC12M012733
GH12F012456 1.4 FANTOM5 Ensembl ENCODE 9.5 +100.1 100085 2.1 CTCF HLF MAFG ZBTB40 ZNF664 ZNF121 MAFF ZNF316 ZNF512 KLF9 DUSP16 ENSG00000240424 CREBL2 BORCS5 BCL2L14 ENSG00000271370 GC12P012465
GH12F012378 1.5 FANTOM5 Ensembl ENCODE 8.5 +23.3 23266 3.1 PKNOX1 MLX RAD21 RARA CREM MIXL1 TBX21 ZFP41 GLIS1 IKZF1 CDKN1B DUSP16 MANSC1 ENSG00000240424 BORCS5 APOLD1 BCL2L14 GC12M012376 GC12P012364
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BORCS5 on UCSC Golden Path with GeneCards custom track

Promoters for BORCS5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000426554 521 2401 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 FOS KLF13

Genomic Location for BORCS5 Gene

Chromosome:
12
Start:
12,357,079 bp from pter
End:
12,469,694 bp from pter
Size:
112,616 bases
Orientation:
Plus strand

Genomic View for BORCS5 Gene

Genes around BORCS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BORCS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BORCS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BORCS5 Gene

Proteins for BORCS5 Gene

  • Protein details for BORCS5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969J3-BORC5_HUMAN
    Recommended name:
    BLOC-1-related complex subunit 5
    Protein Accession:
    Q969J3
    Secondary Accessions:
    • Q96QS5

    Protein attributes for BORCS5 Gene

    Size:
    196 amino acids
    Molecular mass:
    22222 Da
    Quaternary structure:
    • Component of the BLOC-one-related complex (BORC) which is composed of BLOC1S1, BLOC1S2, BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and SNAPIN (PubMed:25898167). Interacts with ARL8B, KIF5A, KLC1 and PLEKHM2; links the lysosomal BORC complex to the microtubule plus-end-directed kinesin motor (PubMed:25898167).

    Alternative splice isoforms for BORCS5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BORCS5 Gene

Post-translational modifications for BORCS5 Gene

  • Myristoylation at Gly-2 mediates attachment to lysosome membranes.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for BORCS5 Gene

Domains & Families for BORCS5 Gene

Gene Families for BORCS5 Gene

Protein Domains for BORCS5 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BORCS5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q969J3

UniProtKB/Swiss-Prot:

BORC5_HUMAN :
  • Belongs to the BORCS5 family.
Family:
  • Belongs to the BORCS5 family.
genes like me logo Genes that share domains with BORCS5: view

Function for BORCS5 Gene

Molecular function for BORCS5 Gene

UniProtKB/Swiss-Prot Function:
As part of the BORC complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, the BORC complex may recruit ARL8B and couple lysosomes to microtubule plus-end-directed kinesin motor. Thereby, it may indirectly play a role in cell spreading and motility.

Gene Ontology (GO) - Molecular Function for BORCS5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with BORCS5: view
genes like me logo Genes that share phenotypes with BORCS5: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BORCS5 Gene

Localization for BORCS5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BORCS5 Gene

Lysosome membrane; Lipid-anchor; Cytoplasmic side.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BORCS5 gene
Compartment Confidence
cytosol 5
lysosome 4
plasma membrane 2
nucleus 2

Gene Ontology (GO) - Cellular Components for BORCS5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005764 lysosome IEA --
GO:0005765 lysosomal membrane IEA --
GO:0005873 colocalizes_with plus-end kinesin complex IDA 25898167
GO:0016020 membrane IEA --
GO:0031224 intrinsic component of membrane IMP 25898167
genes like me logo Genes that share ontologies with BORCS5: view

Pathways & Interactions for BORCS5 Gene

SuperPathways for BORCS5 Gene

No Data Available

Interacting Proteins for BORCS5 Gene

Gene Ontology (GO) - Biological Process for BORCS5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032418 lysosome localization IMP 25898167
GO:0072384 organelle transport along microtubule IMP 25898167
genes like me logo Genes that share ontologies with BORCS5: view

No data available for Pathways by source and SIGNOR curated interactions for BORCS5 Gene

Transcripts for BORCS5 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BORCS5 Gene

No ASD Table

Relevant External Links for BORCS5 Gene

GeneLoc Exon Structure for
BORCS5
ECgene alternative splicing isoforms for
BORCS5

Expression for BORCS5 Gene

NURSA nuclear receptor signaling pathways regulating expression of BORCS5 Gene:

BORCS5

mRNA Expression by UniProt/SwissProt for BORCS5 Gene:

Q969J3-BORC5_HUMAN
Tissue specificity: Ubiquitously expressed (at protein level).

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for BORCS5 Gene

Orthologs for BORCS5 Gene

This gene was present in the common ancestor of animals.

Orthologs for BORCS5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOH12CR1 34 35
  • 99.49 (n)
dog
(Canis familiaris)
Mammalia LOH12CR1 34 35
  • 92.69 (n)
cow
(Bos Taurus)
Mammalia LOH12CR1 34 35
  • 91.5 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia LOH12CR1 35
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Loh12cr1 34 35
  • 87.91 (n)
Borcs5 16
rat
(Rattus norvegicus)
Mammalia Loh12cr1 34
  • 87.91 (n)
oppossum
(Monodelphis domestica)
Mammalia LOH12CR1 35
  • 87 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOH12CR1 34 35
  • 80.63 (n)
lizard
(Anolis carolinensis)
Reptilia LOH12CR1 35
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia loh12cr1 34
  • 74.78 (n)
zebrafish
(Danio rerio)
Actinopterygii loh12cr1 34 35
  • 72.96 (n)
Dr.18715 34
fruit fly
(Drosophila melanogaster)
Insecta CG11802 34 35
  • 49.26 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009657 34
  • 46.63 (n)
worm
(Caenorhabditis elegans)
Secernentea F59E12.11 35
  • 19 (a)
OneToOne
Species where no ortholog for BORCS5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BORCS5 Gene

ENSEMBL:
Gene Tree for BORCS5 (if available)
TreeFam:
Gene Tree for BORCS5 (if available)

Paralogs for BORCS5 Gene

No data available for Paralogs for BORCS5 Gene

Variants for BORCS5 Gene

Sequence variations from dbSNP and Humsavar for BORCS5 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1019340 -- 12,434,002(+) GGGTC(A/G)GTGAG intron-variant
rs1019341 -- 12,439,504(+) TGGTG(C/T)GTGCC intron-variant
rs1030069 -- 12,452,702(+) TGTGG(C/T)GTAAT intron-variant
rs10406743 -- 12,421,143(+) gggaa(A/T)gcttc intron-variant
rs10459098 -- 12,416,390(+) ttcta(A/G)ttcct intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BORCS5 Gene

Variant ID Type Subtype PubMed ID
dgv1391n100 CNV loss 25217958
dgv1392n100 CNV loss 25217958
dgv15n64 CNV loss 17921354
dgv187n27 CNV loss 19166990
dgv2386n54 CNV loss 21841781
dgv2387n54 CNV loss 21841781
dgv2388n54 CNV loss 21841781
dgv269e199 CNV deletion 23128226
dgv462e212 CNV loss 25503493
dgv773n106 CNV deletion 24896259
esv1628398 OTHER inversion 17803354
esv2421794 CNV deletion 20811451
esv2506365 OTHER inversion 19546169
esv2662165 CNV deletion 23128226
esv2673347 CNV deletion 23128226
esv2745567 CNV deletion 23290073
esv2745568 CNV deletion 23290073
esv2760275 CNV loss 21179565
nsv1159984 CNV deletion 26073780
nsv1159985 CNV deletion 26073780
nsv1159983 CNV deletion 26073780
nsv1077768 OTHER inversion 25765185
nsv1046355 CNV loss 25217958
nsv1045637 CNV gain 25217958
nsv1041842 CNV loss 25217958
esv994164 OTHER inversion 20482838
esv5706 OTHER inversion 19470904
esv3628612 CNV loss 21293372
esv3628611 CNV loss 21293372
esv3628610 OTHER inversion 21293372
esv3628609 CNV loss 21293372
esv3628608 CNV loss 21293372
esv3628607 CNV loss 21293372
esv3548774 CNV deletion 23714750
esv3392226 OTHER inversion 20981092
esv3390197 OTHER inversion 20981092
esv2863346 CNV insertion 24192839
esv2760855 CNV loss 21179565
nsv951329 CNV duplication 24416366
nsv818893 CNV loss 17921354
nsv557606 CNV loss 21841781
nsv557605 CNV loss 21841781
nsv557585 CNV loss 21841781
nsv557584 CNV loss 21841781
nsv517152 CNV loss 19592680
nsv514649 CNV loss 21397061
nsv513697 OTHER inversion 21212237
nsv513696 OTHER inversion 21212237
nsv442636 CNV loss 18776908
nsv437141 CNV loss 16327808
nsv436659 OTHER inversion 17901297

Variation tolerance for BORCS5 Gene

Residual Variation Intolerance Score: 71.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.96; 68.10% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BORCS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BORCS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BORCS5 Gene

Disorders for BORCS5 Gene

Relevant External Links for BORCS5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BORCS5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BORCS5

No disorders were found for BORCS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BORCS5 Gene

Publications for BORCS5 Gene

  1. BORC, a multisubunit complex that regulates lysosome positioning. (PMID: 25898167) Pu J. … Bonifacino J.S. (Dev. Cell 2015) 2 3 4 64
  2. A detailed transcriptional map of the chromosome 12p12 tumour suppressor locus. (PMID: 11896457) Montpetit A. … Sinnett D. (Eur. J. Hum. Genet. 2002) 2 3 4 64
  3. Mutational and expression analysis of the chromosome 12p candidate tumor suppressor genes in pre-B acute lymphoblastic leukemia. (PMID: 15284860) Montpetit A. … Sinnett D. (Leukemia 2004) 2 3 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. Multifunctional reagents for quantitative proteome-wide analysis of protein modification in human cells and dynamic profiling of protein lipidation during vertebrate development. (PMID: 25807930) Broncel M. … Tate E.W. (Angew. Chem. Int. Ed. 2015) 4 64

Products for BORCS5 Gene

Sources for BORCS5 Gene

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