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BOLA2B Gene

protein-coding   GIFtS: 38
GCID: GC16M030205

BolA Family Member 2B

(Previous names: bolA-like 2B (E. coli), bolA homolog 2B (E. coli))
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
BolA Family Member 2B1 2     BolA-Like 2B2
BolA Homolog 2B (E. Coli)1     BolA-Like Protein 22
BolA-Like 2B (E. Coli)1     BolA-Like Protein 2 Member B2
BOLA22     BolA-Like Protein 2B2
BolA Homolog 2B2     BOLA2A3

External Ids:    HGNC: 324791   Entrez Gene: 6544832   Ensembl: ENSG000001696277   UniProtKB: Q9H3K63   

Export aliases for BOLA2B gene to outside databases

Previous GC identifers: GC16U900518 GC16M030112


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for BOLA2B Gene:
This gene is located within a region of a segmental duplication on chromosome 16p. The product of this gene
belongs to the eukaryotic subfamily of the BolA-like proteins. This gene encodes the BolA-like protein 2. The
BolA-like proteins are widely conserved from prokaryotes to eukaryotes, and these proteins seem to be involved in
cell proliferation or cell-cycle regulation. This duplicated region contains a complete copy of the short splice
variant of the BOLA2 gene and a partial copy of the long splice variant of the BOLA2 gene. (provided by RefSeq,
Jul 2008)

GeneCards Summary for BOLA2B Gene:
BOLA2B (bolA family member 2B) is a protein-coding gene. An important paralog of this gene is BOLA2.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000016.9  NC_018927.2  NT_187260.1  
Regulatory elements:
   Regulatory transcription factor binding sites in the BOLA2B gene promoter:
         E2F-3a   E2F-4   E2F-5   E2F-1   E2F   p300   E2F-2   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): BOLA2B promoter sequence
   Search Chromatin IP Primers for BOLA2B

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat BOLA2B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p11.2   Ensembl cytogenetic band:  16p11.2   HGNC cytogenetic band: 16p11.2

BOLA2B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BOLA2B gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M030205:  view genomic region     (about GC identifiers)

Start:
30,204,255 bp from pter      End:
30,205,627 bp from pter
Size:
1,373 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: BOLA2_HUMAN, Q9H3K6 (See protein sequence)
Recommended Name: BolA-like protein 2  
Size: 86 amino acids; 10117 Da
Sequence caution: Sequence=AAH22832.1; Type=Erroneous initiation; Sequence=AAI30402.1; Type=Erroneous initiation;
Sequence=AAI30404.1; Type=Erroneous initiation; Sequence=AAI37533.1; Type=Erroneous initiation;
Sequence=AAI37535.1; Type=Erroneous initiation; Sequence=AAI44689.1; Type=Erroneous initiation;
Secondary accessions: A1L454 A7YDY3
Alternative splicing: 2 isoforms:  Q9H3K6-1   Q9H3K6-2   (No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for BOLA2B: NX_Q9H3K6

Explore proteomics data for BOLA2B at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys43, Lys73
  • Modification sites at PhosphoSitePlus

  • See BOLA2B Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001034271.1  
    ENSEMBL proteins: 
     ENSP00000455468   ENSP00000457995   ENSP00000306752  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR002634 BolA

    Graphical View of Domain Structure for InterPro Entry Q9H3K6

    ProtoNet protein and cluster: Q9H3K6

    1 Blocks protein domain: IPB002634 BolA-like protein

    UniProtKB/Swiss-Prot: BOLA2_HUMAN, Q9H3K6
    Similarity: Belongs to the bolA/yrbA family


    Find genes that share domains with BOLA2B           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for BOLA2B

    miRNA
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    miRTarBase miRNAs that target BOLA2B:
    hsa-mir-26b-5p (MIRT029424)

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    SwitchGear 3'UTR luciferase reporter plasmidBOLA2B 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    extracellular2
    golgi apparatus1
    mitochondrion1
    nucleus1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for BOLA2B
    Interactions:

        Search GeneGlobe Interaction Network for BOLA2B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 17)

    Selected Interacting proteins for BOLA2B (Q9H3K63 ENSP000003067524) via UniProtKB, MINT, STRING, and/or I2D (see all 18)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ARRB2P321213I2D: score=1 
    GLRX3ENSP000003308364STRING: ENSP00000330836
    XPNPEP1ENSP000003586944STRING: ENSP00000358694
    XPNPEP2ENSP000003601474STRING: ENSP00000360147
    GLRX5ENSP000003285704STRING: ENSP00000328570
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for BOLA2B (BOLA2)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for BOLA2B gene: 
    NM_001039182.1  

    Unigene Cluster for BOLA2B:

    BolA homolog 2B (E. coli)
    Hs.647333
    Unigene Representative Sequence: NM_001039182
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000569282 ENST00000567436 ENST00000565525 ENST00000305321(uc010bzb.1 uc002dxa.3 uc002dxb.3)

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    Inhib. RNA
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    Primer
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      Search QuantiTect SYBR Green Assays in human, mouse, rat BOLA2B
      QuantiFast Probe-based Assays in human, mouse, rat BOLA2B

    Additional mRNA sequence: 

    BC137532.1 BC137534.1 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    BOLA2B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    BOLA2B Expression
    About this image

    BOLA2B Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    BOLA2B Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.647333
        Custom PCR Arrays for BOLA2B
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BOLA2B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for BOLA2B gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    zebrafish
    (Danio rerio)
    Actinopterygii BOLA2B6
    bolA family member 2B
    58(a)
    1 → many
    7(60030421-60039342) ENSDARG00000051780
    fruit fly
    (Drosophila melanogaster)
    Insecta CG336726
    --
    47(a)
    1 → many
    2R(8521671-8523646)
            Species with no ortholog for BOLA2B

    ENSEMBL Gene Tree for BOLA2B (if available)
    TreeFam Gene Tree for BOLA2B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for BOLA2B gene
    BOLA21 2  
    1 SIMAP similar gene for BOLA2B using alignment to 3 protein entries:     BOLA2_HUMAN (see all proteins):
    BOLA2

    Find genes that share paralogs with BOLA2B           About GenesLikeMe


    5 Pseudogenes.org Pseudogenes for BOLA2B
    PGOHUM00000242362 PGOHUM00000234968 PGOHUM00000240092 PGOHUM00000238024 PGOHUM00000243501


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for BOLA2B (see all 16):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2714183CNV Deletion23290073
    nsv471388CNV Duplication19718026
    nsv471387CNV Duplication19718026
    nsv821543CNV Duplication20802225
    nsv820959CNV Duplication20802225
    nsv905723CNV Loss21882294
    nsv498862CNV Loss21111241
    nsv905720CNV Loss21882294
    nsv9426CNV Gain18304495
    esv29892CNV Gain19812545

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for BOLA2B gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with BOLA2B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Solution structure of a BolA-like protein from Mus musculus. (PubMed id 14718656)1, 3 Kasai T....Yokoyama S. (Protein Sci. 2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (Nat. Biotechnol. 2003)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    5. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    6. Proteomic analysis of I+4I^1 integrin adhesion complexes reveals I+-subunit-dependent protein recruitment. (PubMed id 22623428)1 Byron A....Humphries M.J. (Proteomics 2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    8. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (Cell 2010)
    9. Functional specialization of beta-arrestin interactions revealed by proteomic analysis. (PubMed id 17620599)1 Xiao K....Lefkowitz R.J. (Proc. Natl. Acad. Sci. U.S.A. 2007)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 654483 HGNC: 32479 Ensembl:ENSG00000169627 euGenes: HUgn654483 ECgene: BOLA2B
    H-InvDB: BOLA2B

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for BOLA2B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for BOLA2B gene:
    Search GeneIP for patents involving BOLA2B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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