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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BOLA2B Gene

protein-coding   GIFtS: 37
GCID: GC16M030205

bolA homolog 2B (E. coli)

(Previous name: bolA-like 2B (E. coli) )
 Explore 1 disease affiliated with
BOLA2B via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for BOLA2B    

Aliases
for BOLA2B gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
BolA Homolog 2B (E. Coli)1 2     BolA-Like Protein 22
BolA-Like 2B (E. Coli)1     BolA-Like Protein 2 Member B2
BOLA22     BolA-Like Protein 2B2
BolA-Like 2B2     BOLA2A3

External Ids:    HGNC: 324791   Entrez Gene: 6544832   Ensembl: ENSG000001696277   UniProtKB: Q9H3K63   

Export aliases for BOLA2B gene to outside databases

Previous GC identifers: GC16U900518 GC16M030112


Summaries
for BOLA2B gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for BOLA2B:
This gene is located within a region of a segmental duplication on chromosome 16p. The product of this gene belongs to
the eukaryotic subfamily of the BolA-like proteins. This gene encodes the BolA-like protein 2. The BolA-like proteins
are widely conserved from prokaryotes to eukaryotes, and these proteins seem to be involved in cell proliferation or
cell-cycle regulation. This duplicated region contains a complete copy of the short splice variant of the BOLA2 gene
and a partial copy of the long splice variant of the BOLA2 gene. (provided by RefSeq, Jul 2008)




Genomic Views
for BOLA2B gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010393.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the BOLA2B gene promoter:
         E2F-3a   E2F-4   E2F-5   E2F-1   E2F   p300   E2F-2   E47   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): BOLA2B promoter sequence
   Search SABiosciences Chromatin IP Primers for BOLA2B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BOLA2B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p11.2   Ensembl cytogenetic band:  16p11.2   HGNC cytogenetic band: 16p11.2

BOLA2B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BOLA2B gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M030205:  view genomic region     (about GC identifiers)

Start:
 30,204,255 bp from pter      End:
 30,205,627 bp from pter
Size:
 1,373 bases      Orientation:
 minus strand

Proteins
for BOLA2B gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: BOLA2_HUMAN, Q9H3K6 (See protein sequence)
Recommended Name: BolA-like protein 2  
Size: 86 amino acids; 10117 Da
Sequence caution: Sequence=AAH22832.1; Type=Erroneous initiation; Sequence=AAI30402.1; Type=Erroneous initiation;
Sequence=AAI30404.1; Type=Erroneous initiation; Sequence=AAI37533.1; Type=Erroneous initiation; Sequence=AAI37535.1;
Type=Erroneous initiation; Sequence=AAI44689.1; Type=Erroneous initiation;
Secondary accessions: A1L454 A7YDY3
Alternative splicing: 2 isoforms:  Q9H3K6-1   Q9H3K6-2   (No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for BOLA2B: NX_Q9H3K6

BOLA2B Protein expression data from MOPED and PaxDb:    About this image 

Estimated protein expression log10 (pmol).

REFSEQ proteins: NP_001034271.1  
ENSEMBL proteins: 
 ENSP00000455468   ENSP00000457995   ENSP00000306752  

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Protein Domains /
Families
for BOLA2B gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
BOLA2B for domains           About GeneDecksing

1 InterPro domain/family:
 IPR002634 BolA

Graphical View of Domain Structure for InterPro Entry Q9H3K6

ProtoNet protein and cluster: Q9H3K6

1 Blocks protein family: IPB002634 BolA-like protein

UniProtKB/Swiss-Prot: BOLA2_HUMAN, Q9H3K6
Similarity: Belongs to the bolA/yrbA family


Function
for BOLA2B gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
miRNA
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SwitchGear 3'UTR luciferase reporter plasmid: BOLA2B 3' UTR sequence
Inhib. RNA
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Pathways & Interactions
for BOLA2B gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BOLA2B

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

4 Interacting proteins for BOLA2B (Q9H3K63 ENSP000003067524) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
ARRB2P321213I2D: score=1 
GLRX3ENSP000003308364STRING: ENSP00000330836
XPNPEP1ENSP000003586944STRING: ENSP00000358694
GLRX5ENSP000003285704STRING: ENSP00000328570
About this table

Drugs & Compounds
for BOLA2B gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for BOLA2B
Search CenterWatch for drugs/clinical trials and news about BOLA2B / BOLA2 

Transcripts
for BOLA2B gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
REFSEQ mRNAs for BOLA2B gene: 
NM_001039182.1  

Unigene Cluster for BOLA2B:

BolA homolog 2B (E. coli)
Hs.647333
Unigene Representative Sequence: NM_001039182
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000569282 ENST00000567436 ENST00000565525 ENST00000305321(uc010bzb.1 uc002dxa.3 uc002dxb.3)


miRNA
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Inhib. RNA
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Clone
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Primer
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Additional cDNA sequence: 

BC137532.1 BC137534.1 

GeneLoc Exon Structure


Expression
for BOLA2B gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

BOLA2B expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image
See BOLA2B Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for BOLA2B

SOURCE GeneReport for Unigene cluster: Hs.647333
    SABiosciences Custom PCR Arrays for BOLA2B
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In Situ
Assay Products: 
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Orthologs
for BOLA2B gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
This gene was present in the common ancestor of eukaryotes.

Orthologs for BOLA2B gene from 5/20 species (see all 20)    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
zebrafish
(Danio rerio)		 Actinopterygii zgc:1122711 zgc:112271 61.51(n)
59.52(a)		   553698  XM_003199003.1  XP_003199051.1 
fruit fly
(Drosophila melanogaster)		 Insecta CG336726
 --
 48(a)
 1 → many
 2R(8521671-8523646)
worm
(Caenorhabditis elegans)		 Secernentea T12D8.106
 --
 30(a)
 1 → many
 III(13641692-13642228)
thale cress
(Arabidopsis thaliana)		 eudicotyledons AT5G098306
 BolA-like family protein
 42(a)
 1 → many
 5(3057646-3058821)
rice
(Oryza sativa)		 Liliopsida --
 bolA, putative, expressed
 35(a)
 1 → many
 1(37525091-37525603)


ENSEMBL Gene Tree for BOLA2B (if available)
TreeFam Gene Tree for BOLA2B (if available) 

Paralogs
for BOLA2B gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for BOLA2B gene
BOLA21 2  
2 SIMAP similar genes for BOLA2B using alignment to 3 protein entries:     BOLA2_HUMAN (see all proteins):
BOLA2    LOC101060252

BOLA2B for paralogs           About GeneDecksing


5 Pseudogenes.org Pseudogenes for BOLA2B
PGOHUM00000242362 PGOHUM00000234968 PGOHUM00000240092 PGOHUM00000238024 PGOHUM00000243501


Genomic Variants
for BOLA2B gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 13 variations for BOLA2B
     13 CNVs: 30778 72522 88064 35383 72525 4001 30775 72521 72526 35382 72527 72520 4000
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Disorders / Diseases
for BOLA2B gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
BOLA2B for disorders           About GeneDecksing

1 disease for BOLA2B:    About MalaCards
malaria


Export disorders for BOLA2B gene to outside databases

Publications
for BOLA2B gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for BOLA2B gene, integrated from 9 sources (see all 11):
(articles sorted by number of sources associating them with BOLA2B)		    Utopia: connect your pdf to the dynamic
world of online information

  1. Solution structure of a BolA-like protein from Mus musculus. (PubMed id 14718656)1, 3 Kasai T....Yokoyama S. (2004)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  3. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (2003)
  4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
  5. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
  6. Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyc losome substrate. (PubMed id 21628590)1 Emanuele M.J....Elledge S.J. (2011)
  7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
  8. Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (2010)
  9. Functional specialization of beta-arrestin interactions revealed by proteomic analysis. (PubMed id 17620599)1 Xiao K....Lefkowitz R.J. (2007)
  10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

External Searches for BOLA2B gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing BOLA2B gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 654483 HGNC: 32479 Ensembl:ENSG00000169627 euGenes: HUgn654483 ECgene: BOLA2B
H-InvDB: BOLA2B

Other Databases showing BOLA2B gene

(According to HUGE)
About This Section
   --

Specialized Databases showing BOLA2B gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for BOLA2B Pharmacogenomics, SNPs, Pathways

Intellectual Property
for BOLA2B gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for BOLA2B gene:
Search GeneIP for patents involving BOLA2B

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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About This Section

 
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