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Aliases for BOLA2-SMG1P6 Gene

Aliases for BOLA2-SMG1P6 Gene

  • BOLA2-SMG1P6 Readthrough 2 3 5

External Ids for BOLA2-SMG1P6 Gene

Previous GeneCards Identifiers for BOLA2-SMG1P6 Gene

  • GC16U902267

Summaries for BOLA2-SMG1P6 Gene

Entrez Gene Summary for BOLA2-SMG1P6 Gene

  • This gene represents naturally-occurring readthrough transcription between the upstream BOLA2 (bolA family member 2) and downstream SMG1 pseudogene 6 (SMG1P6) loci. Alternative splicing results in multiple transcript variants, some of which may encode proteins with an N-terminus similar to BOLA2 and a C-terminus related to SMG1 phosphatidylinositol 3-kinase-related kinase. [provided by RefSeq, Feb 2016]

GeneCards Summary for BOLA2-SMG1P6 Gene

BOLA2-SMG1P6 (BOLA2-SMG1P6 Readthrough) is a Protein Coding gene.

Additional gene information for BOLA2-SMG1P6 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BOLA2-SMG1P6 Gene

Genomics for BOLA2-SMG1P6 Gene

Regulatory Elements for BOLA2-SMG1P6 Gene


Promoters for BOLA2-SMG1P6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085048 51 2001

Genomic Locations for BOLA2-SMG1P6 Gene

Genomic Locations for BOLA2-SMG1P6 Gene
chr16:29,443,230-29,454,651
(GRCh38/hg38)
Size:
11,422 bases
Orientation:
Minus strand
chr16:29,454,551-29,465,972
(GRCh37/hg19)

Genomic View for BOLA2-SMG1P6 Gene

Genes around BOLA2-SMG1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BOLA2-SMG1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BOLA2-SMG1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BOLA2-SMG1P6 Gene

Proteins for BOLA2-SMG1P6 Gene

  • Protein details for BOLA2-SMG1P6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J295
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A0B4J295

    Protein attributes for BOLA2-SMG1P6 Gene

    Size:
    124 amino acids
    Molecular mass:
    13658 Da
    Quaternary structure:
    No Data Available
  • Protein details for BOLA2-SMG1P6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BTW0
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    H3BTW0

    Protein attributes for BOLA2-SMG1P6 Gene

    Size:
    89 amino acids
    Molecular mass:
    9854 Da
    Quaternary structure:
    No Data Available
  • Protein details for BOLA2-SMG1P6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BVE0
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    H3BVE0

    Protein attributes for BOLA2-SMG1P6 Gene

    Size:
    249 amino acids
    Molecular mass:
    27665 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BOLA2-SMG1P6 Gene

Post-translational modifications for BOLA2-SMG1P6 Gene

No Post-translational modifications

Other Protein References for BOLA2-SMG1P6 Gene

No data available for DME Specific Peptides for BOLA2-SMG1P6 Gene

Domains & Families for BOLA2-SMG1P6 Gene

Protein Domains for BOLA2-SMG1P6 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BOLA2-SMG1P6: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BOLA2-SMG1P6 Gene

Function for BOLA2-SMG1P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BOLA2-SMG1P6 Gene

Localization for BOLA2-SMG1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BOLA2-SMG1P6 Gene

Pathways & Interactions for BOLA2-SMG1P6 Gene

SuperPathways for BOLA2-SMG1P6 Gene

No Data Available

Interacting Proteins for BOLA2-SMG1P6 Gene

Gene Ontology (GO) - Biological Process for BOLA2-SMG1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BOLA2-SMG1P6 Gene

Drugs & Compounds for BOLA2-SMG1P6 Gene

No Compound Related Data Available

Transcripts for BOLA2-SMG1P6 Gene

mRNA/cDNA for BOLA2-SMG1P6 Gene

(6) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BOLA2-SMG1P6 Gene

No ASD Table

Relevant External Links for BOLA2-SMG1P6 Gene

GeneLoc Exon Structure for
BOLA2-SMG1P6
ECgene alternative splicing isoforms for
BOLA2-SMG1P6

Expression for BOLA2-SMG1P6 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BOLA2-SMG1P6 Gene

Orthologs for BOLA2-SMG1P6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for BOLA2-SMG1P6 Gene

Organism Taxonomy Gene Similarity Type Details
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
OneToOne
zebrafish
(Danio rerio)
Actinopterygii smg1 34
  • 3 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta nonC 34
  • 1 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea smg-1 34
  • 1 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TOR2 34
  • 1 (a)
OneToMany
Species where no ortholog for BOLA2-SMG1P6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for BOLA2-SMG1P6 Gene

ENSEMBL:
Gene Tree for BOLA2-SMG1P6 (if available)
TreeFam:
Gene Tree for BOLA2-SMG1P6 (if available)

Paralogs for BOLA2-SMG1P6 Gene

Pseudogenes.org Pseudogenes for BOLA2-SMG1P6 Gene

genes like me logo Genes that share paralogs with BOLA2-SMG1P6: view

No data available for Paralogs for BOLA2-SMG1P6 Gene

Variants for BOLA2-SMG1P6 Gene

Sequence variations from dbSNP and Humsavar for BOLA2-SMG1P6 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1002602928 -- 29,455,497(+) GGTTC(C/T)GCCCC intron-variant, upstream-variant-2KB
rs1008372191 -- 29,446,746(+) ATATC(A/G)ATTTA intron-variant
rs1008405178 -- 29,449,167(+) TTATA(A/G)GAAAT intron-variant, upstream-variant-2KB
rs1009879525 -- 29,449,556(+) CGGAA(A/G)CTCCA intron-variant, nc-transcript-variant
rs1010324592 -- 29,452,474(+) TGTGA(C/T)GGCTG intron-variant

Relevant External Links for BOLA2-SMG1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BOLA2-SMG1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BOLA2-SMG1P6 Gene

Disorders for BOLA2-SMG1P6 Gene

Relevant External Links for BOLA2-SMG1P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BOLA2-SMG1P6

No disorders were found for BOLA2-SMG1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BOLA2-SMG1P6 Gene

Publications for BOLA2-SMG1P6 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for BOLA2-SMG1P6 Gene

Sources for BOLA2-SMG1P6 Gene

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