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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BOLA2 Gene

protein-coding   GIFtS: 41
GCID: GC16M029454

bolA homolog 2 (E. coli)

(Previous name: bolA-like 2 (E. coli) )
 Explore 1 disease affiliated with
BOLA2 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for BOLA2    

Aliases
for BOLA2 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
BolA Homolog 2 (E. Coli)1 2     BolA-Like 22
BOLA2A1 2 3     BolA-Like Protein 22
My0161 2     BolA-Like Protein 2 Member A2
BolA-Like 2 (E. Coli)1     

External Ids:    HGNC: 294881   Entrez Gene: 5529002   Ensembl: ENSG000001833367   OMIM: 6131825   UniProtKB: Q9H3K63   

Export aliases for BOLA2 gene to outside databases

Previous GC identifers: GC16U900508 GC16M029363 GC16M029364 GC16M027866


Summaries
for BOLA2 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for BOLA2:
This gene is located within a region of a segmental duplication on chromosome 16p. The product of this gene belongs to
the eukaryotic subfamily of the BolA-like proteins. This gene encodes the BolA-like protein 2. The BolA-like proteins
are widely conserved from prokaryotes to eukaryotes, and these proteins seem to be involved in cell proliferation or
cell-cycle regulation. (provided by RefSeq, Jul 2008)




Genomic Views
for BOLA2 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010393.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the BOLA2 gene promoter:
         SRF   E2F-4   E2F-3a   NF-1   NF-1/L   E2F-5   SRF (504 AA)   E2F-2   E2F-1   E2F   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): BOLA2 promoter sequence
   Search SABiosciences Chromatin IP Primers for BOLA2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BOLA2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p11.2   Ensembl cytogenetic band:  16p11.2   HGNC cytogenetic band: 16p11.2

BOLA2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BOLA2 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M029454:  view genomic region     (about GC identifiers)

Start:
 29,454,570 bp from pter      End:
 29,466,285 bp from pter
Size:
 11,716 bases      Orientation:
 minus strand

Proteins
for BOLA2 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: BOLA2_HUMAN, Q9H3K6 (See protein sequence)
Recommended Name: BolA-like protein 2  
Size: 86 amino acids; 10117 Da
Sequence caution: Sequence=AAH22832.1; Type=Erroneous initiation; Sequence=AAI30402.1; Type=Erroneous initiation;
Sequence=AAI30404.1; Type=Erroneous initiation; Sequence=AAI37533.1; Type=Erroneous initiation; Sequence=AAI37535.1;
Type=Erroneous initiation; Sequence=AAI44689.1; Type=Erroneous initiation;
Secondary accessions: A1L454 A7YDY3
Alternative splicing: 2 isoforms:  Q9H3K6-1   Q9H3K6-2   (No experimental confirmation available. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)

Explore the universe of human proteins at neXtProt for BOLA2: NX_Q9H3K6

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9H3K6

    • BOLA2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001026997.1  
    ENSEMBL proteins: 
     ENSP00000331127  

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    Protein Domains /
    Families
    for BOLA2 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    BOLA2 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR002634 BolA

    Graphical View of Domain Structure for InterPro Entry Q9H3K6

    ProtoNet protein and cluster: Q9H3K6

    1 Blocks protein family: IPB002634 BolA-like protein

    UniProtKB/Swiss-Prot: BOLA2_HUMAN, Q9H3K6
    Similarity: Belongs to the bolA/yrbA family


    Function
    for BOLA2 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
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    Pathways & Interactions
    for BOLA2 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BOLA2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

    5/7 Interacting proteins for BOLA2 (Q9H3K63 ENSP000003311274) via UniProtKB, MINT, STRING, and/or I2D (see all 7)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ARRB2P321213I2D: score=1 
    IQCB1ENSP000003115054STRING: ENSP00000311505
    KNCNENSP000003796074STRING: ENSP00000379607
    UBCENSP000003448184STRING: ENSP00000344818
    GLRX3ENSP000003308364STRING: ENSP00000330836
    About this table

    Drugs & Compounds
    for BOLA2 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for BOLA2
    Search CenterWatch for drugs/clinical trials and news about BOLA2 

    Transcripts
    for BOLA2 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section
    REFSEQ mRNAs for BOLA2 gene (2 alternative transcripts): 
    NM_001031827.1  NM_001031833.1  

    Unigene Clusters for BOLA2:

    BolA homolog 2 (E. coli)
    Hs.655267  [show with all ESTs], Hs.744243  [show with all ESTs]
    Unigene Representative Sequences: AK097897, CB984949
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000330978(uc002dss.3 uc002dsr.3)

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    Inhib. RNA
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    Primer
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BOLA2

    Additional cDNA sequence: 

    AF060511.2 AK307153.1 BC022832.1 BC104642.1 BC130401.1 BC130403.1 BC144688.1 

    24/45 DOTS entries (see all 45):

    DT.417735  DT.91773177  DT.91766767  DT.91773187  DT.100048577  DT.100671063  DT.101983748  DT.100713868 
    DT.100640499  DT.100671070  DT.120695453  DT.120695752  DT.101984658  DT.120696616  DT.100642736  DT.100663295 
    DT.120697201  DT.120696992  DT.100698396  DT.100705738  DT.102841550  DT.102841862  DT.120696069  DT.120696709 

    GeneLoc Exon Structure


    Expression
    for BOLA2 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    BOLA2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CCTTTGAACA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image
    See BOLA2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for BOLA2

    SOURCE GeneReport for Unigene clusters: Hs.655267 Hs.744243
        SABiosciences Custom PCR Arrays for BOLA2
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    In Situ
    Assay Products:     
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    Orthologs
    for BOLA2 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for BOLA2 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    zebrafish
    (Danio rerio)    		 Actinopterygii zgc:1122711 zgc:112271 61.51(n)
    59.52(a)    		   553698  XM_003199003.1  XP_003199051.1 
    fruit fly
    (Drosophila melanogaster)    		 Insecta CG336726
    		 --
    		 48(a)
    		 1 → many
    		 2R(8521671-8523646)
    worm
    (Caenorhabditis elegans)    		 Secernentea T12D8.106
    		 --
    		 30(a)
    		 1 → many
    		 III(13641692-13642228)
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons AT5G098306
    		 BolA-like family protein
    		 42(a)
    		 1 → many
    		 5(3057646-3058821)
    rice
    (Oryza sativa)    		 Liliopsida --
    		 bolA, putative, expressed
    		 35(a)
    		 1 → many
    		 1(37525091-37525603)


    ENSEMBL Gene Tree for BOLA2 (if available)
    TreeFam Gene Tree for BOLA2 (if available) 

    Paralogs
    for BOLA2 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for BOLA2 gene
    BOLA2B1 2  
    2 SIMAP similar genes for BOLA2 using alignment to 1 protein entry:     BOLA2_HUMAN:
    BOLA2B    LOC101060252

    BOLA2 for paralogs           About GeneDecksing



    Genomic Variants
    for BOLA2 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 13 variations for BOLA2
         13 CNVs: 30778 72522 88064 35383 72525 4001 30775 72521 72526 35382 72527 72520 4000
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    Disorders / Diseases
    for BOLA2 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    BOLA2 for disorders           About GeneDecksing

    OMIM gene information: 613182    OMIM disorders: --

    1 disease for BOLA2:    About MalaCards
    malaria


    Export disorders for BOLA2 gene to outside databases

    Publications
    for BOLA2 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for BOLA2 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with BOLA2)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Solution structure of a BolA-like protein from Mus musculus. (PubMed id 14718656)1, 3 Kasai T....Yokoyama S. (2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (2003)
    4. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    5. Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyc losome substrate. (PubMed id 21628590)1 Emanuele M.J....Elledge S.J. (2011)
    6. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    7. Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (2010)
    8. hBolA, novel non-classical secreted proteins, belonging to different BolA family with functional divergence. (PubMed id 18548201)1 Zhou Y.B.... Han Z.G. (2008)
    9. Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry. (PubMed id 18781797)1 Meierhofer D.... Kaiser P. (2008)
    10. Functional specialization of beta-arrestin interactions revealed by proteomic analysis. (PubMed id 17620599)1 Xiao K....Lefkowitz R.J. (2007)

    External Searches for BOLA2 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing BOLA2 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 552900 HGNC: 29488 Ensembl:ENSG00000183336 euGenes: HUgn552900 ECgene: BOLA2
    H-InvDB: BOLA2

    Other Databases showing BOLA2 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing BOLA2 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for BOLA2 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for BOLA2 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for BOLA2 gene:
    Search GeneIP for patents involving BOLA2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    Products
    for BOLA2 gene

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    About This Section

     
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