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Aliases for BOK-AS1 Gene

Subcategory (RNA class) for BOK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BOK-AS1 Gene

  • BOK Antisense RNA 1 2 3 5
  • BOK Antisense RNA 1 (Non-Protein Coding) 2 3
  • BOK Antisense RNA (Non-Protein Coding) 2
  • Non-Protein Coding RNA 151 2
  • NCRNA00151 3
  • BOK-AS 3
  • NAToB 3
  • BOKAS 3

External Ids for BOK-AS1 Gene

Previous HGNC Symbols for BOK-AS1 Gene

  • BOKAS

Previous GeneCards Identifiers for BOK-AS1 Gene

  • GC02M242487

Summaries for BOK-AS1 Gene

GeneCards Summary for BOK-AS1 Gene

BOK-AS1 (BOK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BOK-AS1 Gene

Genomics for BOK-AS1 Gene

Regulatory Elements for BOK-AS1 Gene

Enhancers for BOK-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G241609 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -51.1 -51105 2.1 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ELK1 BOK BOK-AS1 ANO7 ENSG00000235351 RNA5SP122 ATG4B
GH02G241432 0.9 ENCODE 10.4 +126.2 126249 1.4 ELF3 FOXA2 ATF1 MLX ARID4B DMAP1 RAD21 ZSCAN9 RARA CREM ANO7 BOK BOK-AS1 GC02P241444 PIR56981 LOC105373973
GH02G241515 0.8 FANTOM5 11.6 +43.0 42968 0.4 SAP130 CHD4 ARID4B ZNF384 HIC1 POLR2A ADNP IKZF2 KLF6 FOXA3 BOK BOK-AS1 ANO7 PASK PPP1R7 NEU4 RTP5 STK25 LOC105373974
GH02G241584 0.7 ENCODE 12.2 -25.7 -25652 0.9 RFX1 MAFG ELF1 BMI1 ZNF316 SMARCA4 RFX3 NFE2L1 CREB1 KLF9 BOK BOK-AS1 ANO7 PPP1R7 PASK ENSG00000229996 ENSG00000273113 GC02P241587
GH02G241611 0.6 ENCODE 11.1 -53.7 -53672 1.9 KLF1 BHLHE40 KLF17 ZNF600 FOXP2 PRDM1 ZNF7 BOK BOK-AS1 ANO7 RNA5SP122 ATG4B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BOK-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BOK-AS1 Gene

Chromosome:
2
Start:
241,544,384 bp from pter
End:
241,559,143 bp from pter
Size:
14,760 bases
Orientation:
Minus strand

Genomic View for BOK-AS1 Gene

Genes around BOK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BOK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BOK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BOK-AS1 Gene

Proteins for BOK-AS1 Gene

Post-translational modifications for BOK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BOK-AS1 Gene

Domains & Families for BOK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BOK-AS1 Gene

Function for BOK-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BOK-AS1 Gene

Localization for BOK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BOK-AS1 Gene

Pathways & Interactions for BOK-AS1 Gene

SuperPathways for BOK-AS1 Gene

No Data Available

Interacting Proteins for BOK-AS1 Gene

Gene Ontology (GO) - Biological Process for BOK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BOK-AS1 Gene

Drugs & Compounds for BOK-AS1 Gene

No Compound Related Data Available

Transcripts for BOK-AS1 Gene

mRNA/cDNA for BOK-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BOK-AS1 Gene

BOK antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BOK-AS1 Gene

No ASD Table

Relevant External Links for BOK-AS1 Gene

GeneLoc Exon Structure for
BOK-AS1
ECgene alternative splicing isoforms for
BOK-AS1

Expression for BOK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BOK-AS1 Gene

SOURCE GeneReport for Unigene cluster for BOK-AS1 Gene:

Hs.621128
genes like me logo Genes that share expression patterns with BOK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BOK-AS1 Gene

Orthologs for BOK-AS1 Gene

Evolution for BOK-AS1 Gene

ENSEMBL:
Gene Tree for BOK-AS1 (if available)
TreeFam:
Gene Tree for BOK-AS1 (if available)

No data available for Orthologs for BOK-AS1 Gene

Paralogs for BOK-AS1 Gene

No data available for Paralogs for BOK-AS1 Gene

Variants for BOK-AS1 Gene

Sequence variations from dbSNP and Humsavar for BOK-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000246197 -- 241,546,352(+) AGATA(C/T)ACACC intron-variant, downstream-variant-500B
rs1000504861 -- 241,556,007(+) TTCAG(A/C/G)AACCA intron-variant
rs1000510401 -- 241,557,852(+) AGATT(A/T)CAATC intron-variant, upstream-variant-2KB
rs1000643349 -- 241,555,800(+) CAGTG(A/G)CCCAC intron-variant
rs1000681073 -- 241,551,350(+) ACCTC(A/C)CAGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BOK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759120 CNV loss 17122850
esv3344058 CNV duplication 20981092
esv3561310 CNV deletion 23714750
esv3584397 CNV loss 25503493
nsv1138906 CNV deletion 24896259
nsv477170 CNV novel sequence insertion 20440878
nsv834588 CNV loss 17160897

Relevant External Links for BOK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BOK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BOK-AS1 Gene

Disorders for BOK-AS1 Gene

Relevant External Links for BOK-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BOK-AS1

No disorders were found for BOK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BOK-AS1 Gene

Publications for BOK-AS1 Gene

  1. A natural antisense transcript, BOKAS, regulates the pro-apoptotic activity of human Bok. (PMID: 19287972) Zhang H. … De Geyter C. (Int. J. Oncol. 2009) 2 3 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64

Products for BOK-AS1 Gene

Sources for BOK-AS1 Gene

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