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BOD1L1 Gene

protein-coding   GIFtS: 37
GCID: GC04M013571

Biorientation Of Chromosomes In Cell Division 1-Like 1

(Previous names: family with sequence similarity 44, member A, biorientation...)
(Previous symbols: FAM44A, BOD1L)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Biorientation Of Chromosomes In Cell Division 1-Like 11 2     Biorientation Of Chromosomes In Cell Division 1-Like1
BOD1L1 2 3     Biorientation Of Chromosomes In Cell Division Protein 1-Like 12
FAM44A1 2 3     KIAA13273
Family With Sequence Similarity 44, Member A1 2     Protein FAM44A3

External Ids:    HGNC: 317921   Entrez Gene: 2592822   Ensembl: ENSG000000382197   UniProtKB: Q8NFC63   

Export aliases for BOD1L1 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for BOD1L1 Gene:
BOD1L1 (biorientation of chromosomes in cell division 1-like 1) is a protein-coding gene. An important paralog of this gene is BOD1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for BOD1L1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidBOD1L1 promoter sequence
   Search Chromatin IP Primers for BOD1L1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat BOD1L1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16.1   Ensembl cytogenetic band:  4p15.33   HGNC cytogenetic band: 4p16.1

BOD1L1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BOD1L1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M013571:  view genomic region     (about GC identifiers)

Start:
13,570,362 bp from pter      End:
13,629,347 bp from pter
Size:
58,986 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: BD1L1_HUMAN, Q8NFC6 (See protein sequence)
Recommended Name: Biorientation of chromosomes in cell division protein 1-like 1  
Size: 3051 amino acids; 330466 Da
Sequence caution: Sequence=AAH16987.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=BAB15299.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
Sequence=CAB70705.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
Secondary accessions: Q6P0M8 Q96AL1 Q9H6G0 Q9NTD6 Q9P2L9

Explore the universe of human proteins at neXtProt for BOD1L1: NX_Q8NFC6

Explore proteomics data for BOD1L1 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys81, Lys2981, Lys2982
  • Modification sites at PhosphoSitePlus

  • See BOD1L1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_683692.2  
    ENSEMBL proteins: 
     ENSP00000040738   ENSP00000425492   ENSP00000420541  

    BOD1L1 Human Recombinant Protein Products:

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    Browse Sino Biological Cell Lysates
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Cloud-Clone Corp.

     
    Search eBioscience for Proteins for BOD1L1 

     
    antibodies-online proteins for BOD1L1 (2 products) 

     
    Search antibodies-online for peptides for BOD1L1

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    Search antibodies-online for antibodies for BOD1L1 

    BOD1L1 Assay Products:

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    Browse ELISAs at Cloud-Clone Corp.
    Browse CLIAs at Cloud-Clone Corp.
    Search eBioscience for ELISAs for BOD1L1 
    Search antibodies-online for kits for BOD1L1 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR017956 AT_hook_DNA-bd_motif
     IPR026955 Bod1_like

    Graphical View of Domain Structure for InterPro Entry Q8NFC6

    ProtoNet protein and cluster: Q8NFC6

    UniProtKB/Swiss-Prot: BD1L1_HUMAN, Q8NFC6
    Similarity: Belongs to the BOD1 family
    Similarity: Contains 1 A.T hook DNA-binding domain


    Find genes that share domains with BOD1L1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
         
    Find genes that share ontologies with BOD1L1           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for BOD1L1:
     Synthetic lethal with c-Myc af 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for BOD1L1

    miRNA
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    miRTarBase miRNAs that target BOD1L1:
    hsa-mir-375 (MIRT019900), hsa-mir-9-5p (MIRT045780)

    Block miRNA regulation of human, mouse, rat BOD1L1 using miScript Target Protectors
    Search for qRT-PCR Assays for microRNAs that regulate BOD1L1
    SwitchGear 3'UTR luciferase reporter plasmidBOD1L1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat BOD1L1

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BOD1L1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--

    Find genes that share ontologies with BOD1L1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for BOD1L1
    Interactions:

        Search GeneGlobe Interaction Network for BOD1L1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for BOD1L1 (Q8NFC63 ENSP000000407384) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    VAV2P527353, ENSP000003609164I2D: score=1 STRING: ENSP00000360916
    UBCENSP000003448184STRING: ENSP00000344818
    KNCNENSP000003796074STRING: ENSP00000379607
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for BOD1L1 (BD1L1)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for BOD1L1 gene: 
    NM_148894.2  

    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000040738(uc003gmz.1 uc010idr.1) ENST00000507943 ENST00000505343
    ENST00000509897 ENST00000511119 ENST00000482713(uc010ids.1)
    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmidBOD1L1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat BOD1L1
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    Primer
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    Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat BOD1L1
      QuantiTect SYBR Green Assays in human, mouse, rat BOD1L1
      QuantiFast Probe-based Assays in human, mouse, rat BOD1L1

    Selected AceView cDNA sequences (see all 175):

    CB243155 AI522218 AA459784 CR614809 AI587243 AA279931 BX102627 AA811147 
    AL137350 AI784648 AI799027 AA974778 W68261 AI083687 AB037748 AI221325 
    W68262 AA554785 AW838931 NM_148894 AI219702 AF528529 AL044271 BU620995 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for BOD1L1    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18a · 18b · 18c · 18d
    SP1:                    -                                                                       -                       -                           
    SP2:                                                                                            -                       -                           
    SP3:                                                                                                                                                
    SP4:                                                                                            -                                                   
    SP5:                                                                                                                    -                           


    ECgene alternative splicing isoforms for BOD1L1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    BOD1L1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    BOD1L1 Expression
    About this image

    BOD1L1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    BOD1L1 Protein Expression
        Custom PCR Arrays for BOD1L1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BOD1L1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for BOD1L1 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Bod1l1 , 5 biorientation of chromosomes in cell division 1-like1, 5 78.46(n)1
    70.23(a)1
      5 (22.58 cM)5
    6657751  NM_001081422.21  NP_001074891.11 
     417875425 
    chicken
    (Gallus gallus)
    Aves BOD1L1 biorientation of chromosomes in cell division 1-like 62.51(n)
    51.54(a)
      422838  XM_420784.4  XP_420784.3 
    lizard
    (Anolis carolinensis)
    Reptilia BOD1L16
    biorientation of chromosomes in cell division 1-li...
    34(a)
    1 ↔ 1
    GL343366.1(235437-303423)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.212962 Xenopus laevis transcribed sequence with weak similarity more 78.03(n)    BU911331.1 
    zebrafish
    (Danio rerio)
    Actinopterygii BOD1L16
    biorientation of chromosomes in cell division 1-li...
    25(a)
    1 ↔ 1
    14(9802-19183) ENSDARG00000089505
    fruit fly
    (Drosophila melanogaster)
    Insecta CG55146
    --
    16(a)
    1 → many
    3R(23763967-23768500)


    ENSEMBL Gene Tree for BOD1L1 (if available)
    TreeFam Gene Tree for BOD1L1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for BOD1L1 gene
    BOD12  BOD1L22  
    2 SIMAP similar genes for BOD1L1 using alignment to 3 protein entries:     BD1L1_HUMAN (see all proteins):
    BOD1    BOD1L2

    Find genes that share paralogs with BOD1L1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for BOD1L1 (see all 1325)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0361244
    A breast cancer sample4--see VAR_0361242 S I mis40--------
    rs100018111,2
    C,F,H--13570152(+) TCATGT/CTCCTC 1 -- ds500111Minor allele frequency- C:0.10NS EA NA WA 1210
    rs1889229621,2
    --13570242(+) CATCAA/CTGACT 1 -- ds50010--------
    rs359528971,2
    C,F--13570339(+) CACACA/GAATAA 1 -- ds50015Minor allele frequency- G:0.18NA 128
    rs2009191561,2
    C--13570467(-) TGTATG/TGGTTT 1 -- ut310--------
    rs1449369231,2
    --13570645(+) ACATGC/TTTAAA 1 -- ut310--------
    rs1475241911,2
    C--13570751(+) TTGAAC/TGCATT 1 -- ut310--------
    rs1485138601,2
    --13570838(+) GAGAAA/GAGGAA 1 -- ut310--------
    rs1427788711,2
    --13570916(+) CGTGGC/TTGGTA 1 -- ut310--------
    rs1915197171,2
    --13570925(+) TAGTAA/CAGTCA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for BOD1L1 (13570362 - 13629347 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for BOD1L1: --
    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing BOD1L1
    DNA2.0 Custom Variant and Variant Library Synthesis for BOD1L1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for BOD1L1 gene, integrated from 10 sources (see all 27):
    (articles sorted by number of sources associating them with BOD1L1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. (PubMed id 17370265)1, 2 Denis N.J.... Figeys D. (Proteomics 2007)
    2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)1, 2 Nagase T.... Ohara O. (DNA Res. 2000)
    6. The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)1 Cox J.L....Rizzino A. (PLoS ONE 2013)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    9. Identification of ubiquitinated proteins from human multiple myeloma U266 cells by proteomics. (PubMed id 22108332)1 Jia H....He Q. (Biomed. Environ. Sci. 2011)
    10. A data set of human endogenous protein ubiquitination sites. (PubMed id 20972266)1 Shi Y....Qin J. (amp 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 259282 HGNC: 31792 AceView: FAM44A Ensembl:ENSG00000038219 euGenes: HUgn259282
    ECgene: BOD1L1 H-InvDB: BOD1L1

    (According to HUGE)
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    HUGE: KIAA1327

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for BOD1L1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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