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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

BOD1L1 Gene

protein-coding   GIFtS: 40
GCID: GC04M013571

Biorientation Of Chromosomes In Cell Division 1-Like 1

(Previous names: family with sequence similarity 44, member A, biorientation...)
(Previous symbols: FAM44A, BOD1L)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Biorientation Of Chromosomes In Cell Division 1-Like 11 2     Biorientation Of Chromosomes In Cell Division 1-Like1
BOD1L1 2 3     Biorientation Of Chromosomes In Cell Division Protein 1-Like 12
FAM44A1 2 3     KIAA13273
Family With Sequence Similarity 44, Member A1 2     Protein FAM44A3

External Ids:    HGNC: 317921   Entrez Gene: 2592822   Ensembl: ENSG000000382197   UniProtKB: Q8NFC63   

Export aliases for BOD1L1 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for BOD1L1 Gene: 
BOD1L1 (biorientation of chromosomes in cell division 1-like 1) is a protein-coding gene. Diseases associated with BOD1L1 include pancreatic cancer, and pancreatitis. GO annotations related to this gene include DNA binding. An important paralog of this gene is BOD1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NT_006316.16  NC_018915.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for BOD1L1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidBOD1L1 promoter sequence
   Search SABiosciences Chromatin IP Primers for BOD1L1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BOD1L1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16.1   Ensembl cytogenetic band:  4p15.33   HGNC cytogenetic band: 4p16.1

BOD1L1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BOD1L1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M013571:  view genomic region     (about GC identifiers)

Start:
13,570,362 bp from pter      End:
13,629,347 bp from pter
Size:
58,986 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: BD1L1_HUMAN, Q8NFC6 (See protein sequence)
Recommended Name: Biorientation of chromosomes in cell division protein 1-like 1  
Size: 3051 amino acids; 330466 Da
Sequence caution: Sequence=AAH16987.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=BAB15299.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
Sequence=CAB70705.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
Secondary accessions: Q6P0M8 Q96AL1 Q9H6G0 Q9NTD6 Q9P2L9

Explore the universe of human proteins at neXtProt for BOD1L1: NX_Q8NFC6

Explore proteomics data for BOD1L1 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8NFC6

  • BOD1L1 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    BOD1L1 Protein Expression
    REFSEQ proteins: NP_683692.2  
    ENSEMBL proteins: 
     ENSP00000040738   ENSP00000425492   ENSP00000420541  

    Human Recombinant Protein Products for BOD1L1: 
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    Browse CLIAs at Cloud-Clone Corp.


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    2 InterPro protein domains:
     IPR017956 AT_hook_DNA-bd_motif
     IPR026955 Bod1_like

    Graphical View of Domain Structure for InterPro Entry Q8NFC6

    ProtoNet protein and cluster: Q8NFC6

    UniProtKB/Swiss-Prot: BD1L1_HUMAN, Q8NFC6
    Similarity: Belongs to the BOD1 family
    Similarity: Contains 1 A.T hook DNA-binding domain


    BOD1L1 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
         
    BOD1L1 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for BOD1L1:
     Synthetic lethal with c-Myc af 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for BOD1L1 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for BOD1L1

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for BOD1L1 
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    miRNA
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    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BOD1L1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for BOD1L1 (Q8NFC63 ENSP000000407384) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    VAV2P527353, ENSP000003609164I2D: score=1 STRING: ENSP00000360916
    UBCENSP000003448184STRING: ENSP00000344818
    KNCNENSP000003796074STRING: ENSP00000379607
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for BOD1L1 (BD1L1)

    Search CenterWatch for drugs/clinical trials and news about BOD1L1 / BD1L1

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for BOD1L1 gene: 
    NM_148894.2  

    Unigene Cluster for BOD1L1:

    Biorientation of chromosomes in cell division 1-like 1
    Hs.744935  [show with all ESTs]
    Unigene Representative Sequence: NM_148894
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000040738(uc003gmz.1 uc010idr.1) ENST00000507943 ENST00000505343
    ENST00000509897 ENST00000511119 ENST00000482713(uc010ids.1)
    miRNA
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    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BOD1L1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BOD1L1

    Additional mRNA sequence: 

    AB037748.2 AF528529.1 AK025361.1 AK025965.1 AK090534.1 AK122806.1 AK298130.1 AL137350.1 
    AL137652.1 BC016987.1 BC043603.1 BC065546.1 BC087835.1 BX648206.1 

    11 DOTS entries:

    DT.95378777  DT.40250416  DT.97794305  DT.212643  DT.100740994  DT.100740779  DT.40308756  DT.100648557 
    DT.431581  DT.75165416  DT.426944 

    24/175 AceView cDNA sequences (see all 175):

    AW291533 AW573547 AI221325 AA769704 W68261 BU620995 BM697225 BU735907 
    AA459784 BX648206 AI799027 AF528529 CA311904 CR614809 CA428205 AI083687 
    BC065546 AA279931 AI049791 AA554785 BG058609 BC016987 AW452303 CB161081 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for BOD1L1    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18a · 18b · 18c · 18d
    SP1:                    -                                                                       -                       -                           
    SP2:                                                                                            -                       -                           
    SP3:                                                                                                                                                
    SP4:                                                                                            -                                                   
    SP5:                                                                                                                    -                           


    ECgene alternative splicing isoforms for BOD1L1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    BOD1L1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    BOD1L1 Expression
    About this image


    See BOD1L1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for BOD1L1

    SOURCE GeneReport for Unigene cluster: Hs.744935
        SABiosciences Custom PCR Arrays for BOD1L1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BOD1L1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for BOD1L1 gene from 5/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Bod1l1 , 5 biorientation of chromosomes in cell division 1-like1, 5 78.43(n)1
    70.42(a)1
      5 (22.58 cM)5
    6657751  NM_001081422.21  NP_001074891.11 
     417875425 
    chicken
    (Gallus gallus)
    Aves BOD1L1 biorientation of chromosomes in cell division 1-like 59.83(n)
    47.38(a)
      422838  XM_420784.3  XP_420784.3 
    lizard
    (Anolis carolinensis)
    Reptilia BOD1L16
    biorientation of chromosomes in cell division 1-li...
    37(a)
    1 ↔ 1
    GL343366.1(235437-303423)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.212962 Xenopus laevis transcribed sequence with weak similarity more 78.03(n)    BU911331.1 
    zebrafish
    (Danio rerio)
    Actinopterygii BOD1L16
    biorientation of chromosomes in cell division 1-li...
    25(a)
    1 ↔ 1
    14(9802-19183)


    ENSEMBL Gene Tree for BOD1L1 (if available)
    TreeFam Gene Tree for BOD1L1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for BOD1L1 gene
    BOD12  BOD1L22  
    2 SIMAP similar genes for BOD1L1 using alignment to 3 protein entries:     BD1L1_HUMAN (see all proteins):
    BOD1    BOD1L2

    BOD1L1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1325 SNPs in BOD1L1 are shown (see all 1325)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0361244
    A breast cancer sample4--see VAR_0361242 S I mis40--------
    rs100018111,2
    C,F,H--13570152(+) TCATGT/CTCCTC 1 -- ds500111Minor allele frequency- C:0.10NS EA NA WA 1210
    rs1889229621,2
    --13570242(+) CATCAA/CTGACT 1 -- ds50010--------
    rs359528971,2
    C,F--13570339(+) CACACA/GAATAA 1 -- ds50015Minor allele frequency- G:0.18NA 128
    rs2009191561,2
    C--13570467(-) TGTATG/TGGTTT 1 -- ut310--------
    rs1449369231,2
    --13570645(+) ACATGC/TTTAAA 1 -- ut310--------
    rs1475241911,2
    C--13570751(+) TTGAAC/TGCATT 1 -- ut310--------
    rs1485138601,2
    --13570838(+) GAGAAA/GAGGAA 1 -- ut310--------
    rs1427788711,2
    --13570916(+) CGTGGC/TTGGTA 1 -- ut310--------
    rs1915197171,2
    --13570925(+) TAGTAA/CAGTCA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for BOD1L1 (13570362 - 13629347 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for BOD1L1: --
    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing BOD1L1
    DNA2.0 Custom Variant and Variant Library Synthesis for BOD1L1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    2 diseases for BOD1L1:    About MalaCards
    pancreatic cancer    pancreatitis


    BOD1L1 for disorders           About GeneDecksing


    Export disorders for BOD1L1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for BOD1L1 gene, integrated from 9 sources (see all 27):
    (articles sorted by number of sources associating them with BOD1L1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. (PubMed id 17370265)1, 2 Denis N.J.... Figeys D. (2007)
    2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)1, 2 Nagase T.... Ohara O. (2000)
    6. The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)1 Cox J.L....Rizzino A. (2013)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    9. Identification of ubiquitinated proteins from human m ultiple myeloma U266 cells by proteomics. (PubMed id 22108332)1 Jia H....He Q. (2011)
    10. A data set of human endogenous protein ubiquitination sites. (PubMed id 20972266)1 Shi Y....Qin J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 259282 HGNC: 31792 AceView: FAM44A Ensembl:ENSG00000038219 euGenes: HUgn259282
    ECgene: BOD1L1 H-InvDB: BOD1L1

    (According to HUGE)
    About This Section
    HUGE: KIAA1327

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for BOD1L1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for BOD1L1 gene:
    Search GeneIP for patents involving BOD1L1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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