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Aliases for BNIP2 Gene

Aliases for BNIP2 Gene

  • BCL2/Adenovirus E1B 19kDa Interacting Protein 2 2 3 5
  • NIP2 3 4
  • BCL2/Adenovirus E1B 19kD-Interacting Protein 2 2
  • BNIP-2 3

External Ids for BNIP2 Gene

Previous GeneCards Identifiers for BNIP2 Gene

  • GC15M055513
  • GC15M053003
  • GC15M057534
  • GC15M057671
  • GC15M057742
  • GC15M059951
  • GC15M036777

Summaries for BNIP2 Gene

Entrez Gene Summary for BNIP2 Gene

  • This gene is a member of the BCL2/adenovirus E1B 19 kd-interacting protein (BNIP) family. It interacts with the E1B 19 kDa protein, which protects cells from virally-induced cell death. The encoded protein also interacts with E1B 19 kDa-like sequences of BCL2, another apoptotic protector. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2016]

GeneCards Summary for BNIP2 Gene

BNIP2 (BCL2/Adenovirus E1B 19kDa Interacting Protein 2) is a Protein Coding gene. Among its related pathways are Developmental Biology and CDO in myogenesis. GO annotations related to this gene include calcium ion binding and GTPase activator activity. An important paralog of this gene is BNIPL.

UniProtKB/Swiss-Prot for BNIP2 Gene

  • Implicated in the suppression of cell death. Interacts with the BCL-2 and adenovirus E1B 19 kDa proteins.

Gene Wiki entry for BNIP2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BNIP2 Gene

Genomics for BNIP2 Gene

Regulatory Elements for BNIP2 Gene

Promoters for BNIP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BNIP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for BNIP2 Gene

Chromosome:
15
Start:
59,659,146 bp from pter
End:
59,689,534 bp from pter
Size:
30,389 bases
Orientation:
Minus strand

Genomic View for BNIP2 Gene

Genes around BNIP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BNIP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BNIP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BNIP2 Gene

Proteins for BNIP2 Gene

  • Protein details for BNIP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12982-BNIP2_HUMAN
    Recommended name:
    BCL2/adenovirus E1B 19 kDa protein-interacting protein 2
    Protein Accession:
    Q12982
    Secondary Accessions:
    • B4DS94

    Protein attributes for BNIP2 Gene

    Size:
    314 amino acids
    Molecular mass:
    36018 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for BNIP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BNIP2 Gene

Proteomics data for BNIP2 Gene at MOPED

Post-translational modifications for BNIP2 Gene

  • Ubiquitination at Lys 219, Lys 228, and Lys 267
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for BNIP2 Gene

Domains & Families for BNIP2 Gene

Suggested Antigen Peptide Sequences for BNIP2 Gene

Graphical View of Domain Structure for InterPro Entry

Q12982

UniProtKB/Swiss-Prot:

BNIP2_HUMAN :
  • Contains 1 CRAL-TRIO domain.
Domain:
  • Contains 1 CRAL-TRIO domain.
genes like me logo Genes that share domains with BNIP2: view

No data available for Gene Families for BNIP2 Gene

Function for BNIP2 Gene

Molecular function for BNIP2 Gene

UniProtKB/Swiss-Prot Function:
Implicated in the suppression of cell death. Interacts with the BCL-2 and adenovirus E1B 19 kDa proteins.

Gene Ontology (GO) - Molecular Function for BNIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity TAS 10799524
genes like me logo Genes that share ontologies with BNIP2: view
genes like me logo Genes that share phenotypes with BNIP2: view

Animal Models for BNIP2 Gene

MGI Knock Outs for BNIP2:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BNIP2 Gene

Localization for BNIP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BNIP2 Gene

Cytoplasm. Cytoplasm, perinuclear region. Note=Localizes to the nuclear envelope region and to other cytoplasmic structures.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BNIP2 Gene COMPARTMENTS Subcellular localization image for BNIP2 gene
Compartment Confidence
cytosol 5
nucleus 5
golgi apparatus 2
plasma membrane 2
cytoskeleton 1
endosome 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for BNIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with BNIP2: view

Pathways & Interactions for BNIP2 Gene

genes like me logo Genes that share pathways with BNIP2: view

Pathways by source for BNIP2 Gene

3 Reactome pathways for BNIP2 Gene
1 GeneGo (Thomson Reuters) pathway for BNIP2 Gene

SIGNOR curated interactions for BNIP2 Gene

Activates:
Is activated by:

Gene Ontology (GO) - Biological Process for BNIP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IPI 7954800
GO:0042692 muscle cell differentiation TAS --
GO:0045666 positive regulation of neuron differentiation IEA --
GO:0051057 positive regulation of small GTPase mediated signal transduction IEA --
genes like me logo Genes that share ontologies with BNIP2: view

Drugs & Compounds for BNIP2 Gene

No Compound Related Data Available

Transcripts for BNIP2 Gene

mRNA/cDNA for BNIP2 Gene

(6) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BNIP2 Gene

BCL2/adenovirus E1B 19kDa interacting protein 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BNIP2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b
SP1: - - - - - -
SP2:
SP3: - - -
SP4: - - -
SP5: -
SP6: -
SP7:

Relevant External Links for BNIP2 Gene

GeneLoc Exon Structure for
BNIP2
ECgene alternative splicing isoforms for
BNIP2

Expression for BNIP2 Gene

mRNA expression in normal human tissues for BNIP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for BNIP2 Gene

This gene is overexpressed in Pancreas (22.9), Testis (19.0), Platelet (7.7), and Monocytes (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for BNIP2 Gene



SOURCE GeneReport for Unigene cluster for BNIP2 Gene Hs.646490

genes like me logo Genes that share expression patterns with BNIP2: view

Protein tissue co-expression partners for BNIP2 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BNIP2 Gene

Orthologs for BNIP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for BNIP2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BNIP2 35
  • 94.48 (n)
  • 98.41 (a)
BNIP2 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BNIP2 35
  • 93.72 (n)
  • 95.23 (a)
BNIP2 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bnip2 35
  • 86.52 (n)
  • 92.68 (a)
Bnip2 16
Bnip2 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia BNIP2 35
  • 99.92 (n)
  • 99.75 (a)
BNIP2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bnip2 35
  • 87.07 (n)
  • 93.31 (a)
oppossum
(Monodelphis domestica)
Mammalia BNIP2 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BNIP2 36
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves BNIP2 35
  • 84.14 (n)
  • 90.61 (a)
BNIP2 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BNIP2 36
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bnip2 35
  • 78.09 (n)
  • 81.45 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.8459 35
zebrafish
(Danio rerio)
Actinopterygii bnip2 35
LOC100332015 35
  • 72.45 (n)
  • 80.75 (a)
bnip2 36
  • 56 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG11593 37
  • 48 (a)
CG11593 36
  • 25 (a)
OneToMany
Species with no ortholog for BNIP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BNIP2 Gene

ENSEMBL:
Gene Tree for BNIP2 (if available)
TreeFam:
Gene Tree for BNIP2 (if available)

Paralogs for BNIP2 Gene

Paralogs for BNIP2 Gene

(6) SIMAP similar genes for BNIP2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with BNIP2: view

Variants for BNIP2 Gene

Sequence variations from dbSNP and Humsavar for BNIP2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs6151509 - 59,680,288(-) TGATA(C/G/T)TATTG reference, missense
rs1749 -- 59,677,030(+) TTAAT(C/T)ATTGA intron-variant
rs754641 -- 59,689,391(+) GGCGG(A/G)GGCGT reference, missense
rs754642 -- 59,689,520(+) GCGGA(C/T)CCGTC upstream-variant-2KB, utr-variant-5-prime
rs754643 -- 59,689,586(+) GCTGT(C/T)CGCAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BNIP2 Gene

Variant ID Type Subtype PubMed ID
nsv7266 OTHER Inversion 18451855
nsv904254 CNV Gain 21882294
nsv527307 CNV Gain 19592680
nsv523274 CNV Loss 19592680

Variation tolerance for BNIP2 Gene

Residual Variation Intolerance Score: 32.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.33; 94.16% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BNIP2 Gene

HapMap Linkage Disequilibrium report
BNIP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BNIP2 Gene

Disorders for BNIP2 Gene

Relevant External Links for BNIP2

Genetic Association Database (GAD)
BNIP2
Human Genome Epidemiology (HuGE) Navigator
BNIP2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BNIP2

No disorders were found for BNIP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BNIP2 Gene

Publications for BNIP2 Gene

  1. Adenovirus E1B 19 kDa and Bcl-2 proteins interact with a common set of cellular proteins. (PMID: 7954800) Boyd J.M. … Chinnadurai G. (Cell 1994) 2 3 4 67
  2. BNIP-2 induces cell elongation and membrane protrusions by interacting with Cdc42 via a unique Cdc42-binding motif within its BNIP-2 and Cdc42GAP homology domain. (PMID: 15652341) Zhou Y.T. … Low B.C. (Exp. Cell Res. 2005) 3 23
  3. Concerted regulation of cell dynamics by BNIP-2 and Cdc42GAP homology/Sec14p-like, proline-rich, and GTPase-activating protein domains of a novel Rho GTPase-activating protein, BPGAP1. (PMID: 12944407) Shang X. … Low B.C. (J. Biol. Chem. 2003) 3 23
  4. Estrogen neuroprotection: the involvement of the Bcl-2 binding protein BNIP2. (PMID: 11744098) Belcredito S. … Maggi A. (Brain Res. Brain Res. Rev. 2001) 3 23
  5. KIF5B transports BNIP-2 to regulate p38 mitogen-activated protein kinase activation and myoblast differentiation. (PMID: 25378581) Yi P. … Zhou Y.T. (Mol. Biol. Cell 2015) 3

Products for BNIP2 Gene

Sources for BNIP2 Gene

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