Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BNIP1 Gene

Aliases for BNIP1 Gene

  • BCL2/Adenovirus E1B 19kDa Interacting Protein 1 2 3 5
  • BCL2/Adenovirus E1B 19 KDa Protein-Interacting Protein 1 3 4
  • Transformation-Related Gene 8 Protein 3 4
  • TRG-8 3 4
  • NIP1 3 4
  • BCL2/Adenovirus E1B 19kD-Interacting Protein 1 2
  • SEC20L 4
  • SEC20 3

External Ids for BNIP1 Gene

Previous GeneCards Identifiers for BNIP1 Gene

  • GC05P172829
  • GC05P173273
  • GC05P172507
  • GC05P172552
  • GC05P172504
  • GC05P167665

Summaries for BNIP1 Gene

Entrez Gene Summary for BNIP1 Gene

  • This gene is a member of the BCL2/adenovirus E1B 19 kd-interacting protein (BNIP) family. It interacts with the E1B 19 kDa protein, which protects cells from virally-induced cell death. The encoded protein also interacts with E1B 19 kDa-like sequences of BCL2, another apoptotic protector. In addition, this protein is involved in vesicle transport into the endoplasmic reticulum. Alternative splicing of this gene results in four protein products with identical N- and C-termini. [provided by RefSeq, Mar 2011]

GeneCards Summary for BNIP1 Gene

BNIP1 (BCL2/Adenovirus E1B 19kDa Interacting Protein 1) is a Protein Coding gene. Among its related pathways are Vesicle-mediated transport and Golgi-to-ER retrograde transport. GO annotations related to this gene include SNAP receptor activity.

UniProtKB/Swiss-Prot for BNIP1 Gene

  • SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BNIP1 Gene

Genomics for BNIP1 Gene

Regulatory Elements for BNIP1 Gene

Promoters for BNIP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BNIP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BNIP1 Gene

Chromosome:
5
Start:
173,144,442 bp from pter
End:
173,164,387 bp from pter
Size:
19,946 bases
Orientation:
Plus strand

Genomic View for BNIP1 Gene

Genes around BNIP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BNIP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BNIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BNIP1 Gene

Proteins for BNIP1 Gene

  • Protein details for BNIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12981-SEC20_HUMAN
    Recommended name:
    Vesicle transport protein SEC20
    Protein Accession:
    Q12981
    Secondary Accessions:
    • D3DQM3
    • D3DQM4
    • D3DQM5
    • D3DQM6
    • O75622
    • O75623
    • O75624
    • Q6K044
    • Q96FG4

    Protein attributes for BNIP1 Gene

    Size:
    228 amino acids
    Molecular mass:
    26132 Da
    Quaternary structure:
    • Component of a SNARE complex consisting of STX18, USE1L, BNIP1/SEC20L and SEC22B. Interacts directly with STX18, RINT1/TIP20L and NAPA. Interacts with ZW10 through RINT1. Interacts with BCL2 and adenovirus E1B 19 kDa protein.
    Miscellaneous:
    • Silencing of BNIP1 disrupts ER morphology.

    Alternative splice isoforms for BNIP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BNIP1 Gene

Proteomics data for BNIP1 Gene at MOPED

Post-translational modifications for BNIP1 Gene

  • Lys-63-linked polyubiquitination by RNF185 allows recruiting of autophagy receptor SQSTM1, which simultaneously binds both ubiquitin and LC3 to link ubiquitination and autophagy.
  • Ubiquitination at Lys 221
  • Modification sites at PhosphoSitePlus

Other Protein References for BNIP1 Gene

Antibody Products

No data available for DME Specific Peptides for BNIP1 Gene

Domains & Families for BNIP1 Gene

Gene Families for BNIP1 Gene

Protein Domains for BNIP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BNIP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q12981

UniProtKB/Swiss-Prot:

SEC20_HUMAN :
  • Belongs to the SEC20 family.
Family:
  • Belongs to the SEC20 family.
genes like me logo Genes that share domains with BNIP1: view

Function for BNIP1 Gene

Molecular function for BNIP1 Gene

UniProtKB/Swiss-Prot Function:
SNARE that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Required for maintenance of ER network. Implicated in the suppression of cell death. May be involved in mitochondrial autophagy.
genes like me logo Genes that share phenotypes with BNIP1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for BNIP1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BNIP1 Gene

Localization for BNIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BNIP1 Gene

Mitochondrion. Endoplasmic reticulum membrane; Single-pass type IV membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BNIP1 Gene COMPARTMENTS Subcellular localization image for BNIP1 gene
Compartment Confidence
endoplasmic reticulum 5
mitochondrion 5
nucleus 5
cytosol 2
golgi apparatus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for BNIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031201 SNARE complex IDA 15272311
GO:0043231 intracellular membrane-bounded organelle IDA 7954800
genes like me logo Genes that share ontologies with BNIP1: view

Pathways & Interactions for BNIP1 Gene

genes like me logo Genes that share pathways with BNIP1: view

Gene Ontology (GO) - Biological Process for BNIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016192 vesicle-mediated transport IEA --
GO:0016320 endoplasmic reticulum membrane fusion IMP 15272311
GO:0097194 execution phase of apoptosis IC 15272311
genes like me logo Genes that share ontologies with BNIP1: view

No data available for SIGNOR curated interactions for BNIP1 Gene

Drugs & Compounds for BNIP1 Gene

No Compound Related Data Available

Transcripts for BNIP1 Gene

Unigene Clusters for BNIP1 Gene

BCL2/adenovirus E1B 19kDa interacting protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BNIP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5:

Relevant External Links for BNIP1 Gene

GeneLoc Exon Structure for
BNIP1
ECgene alternative splicing isoforms for
BNIP1

Expression for BNIP1 Gene

mRNA expression in normal human tissues for BNIP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for BNIP1 Gene

This gene is overexpressed in Cervix (17.2), Pancreas (7.8), and Bone (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for BNIP1 Gene



SOURCE GeneReport for Unigene cluster for BNIP1 Gene Hs.145726

mRNA Expression by UniProt/SwissProt for BNIP1 Gene

Q12981-SEC20_HUMAN
Tissue specificity: Isoform 1 is highly expressed in heart, brain, liver skeletal muscle and pancreas. Isoform 3 is moderately expressed in placenta, lung and kidney. Isoform 4 is highly expressed in testis and small intestine.
genes like me logo Genes that share expression patterns with BNIP1: view

Protein tissue co-expression partners for BNIP1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for BNIP1 Gene

Orthologs for BNIP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for BNIP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BNIP1 35
  • 89.62 (n)
  • 94.74 (a)
BNIP1 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BNIP1 35
  • 91.81 (n)
  • 96.05 (a)
BNIP1 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bnip1 35
  • 86.55 (n)
  • 93.86 (a)
Bnip1 16
Bnip1 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia BNIP1 35
  • 99.71 (n)
  • 100 (a)
BNIP1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bnip1 35
  • 86.99 (n)
  • 95.18 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 89 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia BNIP1 36
  • 89 (a)
OneToOne
chicken
(Gallus gallus)
Aves BNIP1 35
  • 75.04 (n)
  • 82.82 (a)
BNIP1 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BNIP1 36
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bnip1 35
  • 71.07 (n)
  • 79.74 (a)
African clawed frog
(Xenopus laevis)
Amphibia MGC64539 35
zebrafish
(Danio rerio)
Actinopterygii bnip1b 35
  • 71.2 (n)
  • 75 (a)
Dr.15880 35
bnip1a 36
  • 74 (a)
OneToMany
bnip1b 36
  • 74 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000242 35
  • 46.86 (n)
  • 34.91 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG2023 35
  • 48.88 (n)
  • 36.54 (a)
CG2023 36
  • 31 (a)
OneToOne
Species with no ortholog for BNIP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BNIP1 Gene

ENSEMBL:
Gene Tree for BNIP1 (if available)
TreeFam:
Gene Tree for BNIP1 (if available)

Paralogs for BNIP1 Gene

No data available for Paralogs for BNIP1 Gene

Variants for BNIP1 Gene

Sequence variations from dbSNP and Humsavar for BNIP1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs5745100 - 173,144,587(+) AACCA(A/C)GAGAT reference, missense
rs8069 -- 173,164,153(+) CGAAC(C/T)GCCTC utr-variant-3-prime
rs8543 -- 173,164,334(+) TTCCT(G/T)GAATA utr-variant-3-prime
rs29794 -- 173,150,766(-) ATTTT(A/T)AAAAA intron-variant
rs29795 -- 173,150,400(-) ACATA(C/T)TGTTT intron-variant

Variation tolerance for BNIP1 Gene

Residual Variation Intolerance Score: 54.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.86; 17.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BNIP1 Gene

HapMap Linkage Disequilibrium report
BNIP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for BNIP1 Gene

Disorders for BNIP1 Gene

Relevant External Links for BNIP1

Genetic Association Database (GAD)
BNIP1
Human Genome Epidemiology (HuGE) Navigator
BNIP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BNIP1

No disorders were found for BNIP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BNIP1 Gene

Publications for BNIP1 Gene

  1. Involvement of BNIP1 in apoptosis and endoplasmic reticulum membrane fusion. (PMID: 15272311) Nakajima K. … Tagaya M. (EMBO J. 2004) 2 3 4 67
  2. Adenovirus E1B 19 kDa and Bcl-2 proteins interact with a common set of cellular proteins. (PMID: 7954800) Boyd J.M. … Chinnadurai G. (Cell 1994) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. A novel RING finger E3 ligase RNF186 regulate ER stress-mediated apoptosis through interaction with BNip1. (PMID: 23896122) Wang P. … Tang J. (Cell. Signal. 2013) 3
  5. Endoplasmic reticulum-specific BH3-only protein BNIP1 induces mitochondrial fragmentation in a Bcl-2- and Drp1-dependent manner. (PMID: 22020994) Ryu S.W. … Choi C. (J. Cell. Physiol. 2012) 3

Products for BNIP1 Gene

Sources for BNIP1 Gene

Back to Top

Content