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Aliases for BNC2 Gene

Aliases for BNC2 Gene

  • Basonuclin 2 2 3
  • Zinc Finger Protein Basonuclin-2 3
  • BSN2 3

External Ids for BNC2 Gene

Previous GeneCards Identifiers for BNC2 Gene

  • GC09U900603

Summaries for BNC2 Gene

GeneCards Summary for BNC2 Gene

BNC2 (Basonuclin 2) is a Protein Coding gene. An important paralog of this gene is BNC1.

UniProtKB/Swiss-Prot for BNC2 Gene

  • Probable transcription factor specific for skin keratinocytes. May play a role in the differentiation of spermatozoa and oocytes

Gene Wiki entry for BNC2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BNC2 Gene

Genomics for BNC2 Gene

Regulatory Elements for BNC2 Gene

Genomic Location for BNC2 Gene

Start:
16,409,503 bp from pter
End:
16,870,843 bp from pter
Size:
461,341 bases
Orientation:
Minus strand

Genomic View for BNC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BNC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BNC2 Gene

Proteins for BNC2 Gene

  • Protein details for BNC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZN30-BNC2_HUMAN
    Recommended name:
    Zinc finger protein basonuclin-2
    Protein Accession:
    Q6ZN30
    Secondary Accessions:
    • B1APG9
    • Q6T3A3
    • Q8NAR2
    • Q9H6J0
    • Q9NXV0

    Protein attributes for BNC2 Gene

    Size:
    1099 amino acids
    Molecular mass:
    122330 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAR99389.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA90908.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB15269.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC03837.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for BNC2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BNC2 Gene

Proteomics data for BNC2 Gene at MOPED

Post-translational modifications for BNC2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for BNC2 Gene

Domains for BNC2 Gene

Gene Families for BNC2 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for BNC2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6ZN30

UniProtKB/Swiss-Prot:

BNC2_HUMAN :
  • Q6ZN30
Similarity:
  • Contains 4 C2H2-type zinc fingers.
genes like me logo Genes that share domains with BNC2: view

Function for BNC2 Gene

Molecular function for BNC2 Gene

UniProtKB/Swiss-Prot Function: Probable transcription factor specific for skin keratinocytes. May play a role in the differentiation of spermatozoa and oocytes

Gene Ontology (GO) - Molecular Function for BNC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0008270 zinc ion binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with BNC2: view
genes like me logo Genes that share phenotypes with BNC2: view

miRNA for BNC2 Gene

miRTarBase miRNAs that target BNC2

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for BNC2 Gene

Localization for BNC2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BNC2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BNC2 Gene COMPARTMENTS Subcellular localization image for BNC2 gene
Compartment Confidence
nucleus 5
plasma membrane 4
cytosol 3

Gene Ontology (GO) - Cellular Components for BNC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with BNC2: view

Pathways for BNC2 Gene

SuperPathways for BNC2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BNC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003416 endochondral bone growth IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0043586 tongue development IEA --
GO:0060021 palate development IEA --
genes like me logo Genes that share ontologies with BNC2: view

No data available for Pathways by source for BNC2 Gene

Transcripts for BNC2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for BNC2 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12
SP1: - - - - - -
SP2: -
SP3:
SP4:
SP5:
SP6:

Relevant External Links for BNC2 Gene

GeneLoc Exon Structure for
BNC2
ECgene alternative splicing isoforms for
BNC2

Expression for BNC2 Gene

mRNA expression in normal human tissues for BNC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BNC2 Gene

This gene is overexpressed in Uterus (5.6), Ovary (5.6), and Fallopian Tube (4.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for BNC2 Gene

SOURCE GeneReport for Unigene cluster for BNC2 Gene Hs.656581

mRNA Expression by UniProt/SwissProt for BNC2 Gene

Q6ZN30-BNC2_HUMAN
Tissue specificity: Highly expressed in testis, uterus and small intestine, and weakly expressed in colon and prostate. Also expressed in skin, primary keratinocytes, immortalized keratinocytes, and HeLa and HEK293 cells. Not detected in blood, thymus, spleen or Hep-G2 cells.
genes like me logo Genes that share expressions with BNC2: view

Orthologs for BNC2 Gene

This gene was present in the common ancestor of animals.

Orthologs for BNC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BNC2 35
  • 99.82 (n)
  • 99.91 (a)
BNC2 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BNC2 35
  • 91.96 (n)
  • 96.88 (a)
BNC2 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BNC2 35
  • 94.29 (n)
  • 98.73 (a)
BNC2 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bnc2 35
  • 90.91 (n)
  • 96.91 (a)
Bnc2 16
Bnc2 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BNC2 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BNC2 36
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bnc2 35
  • 90.99 (n)
  • 96.54 (a)
chicken
(Gallus gallus)
Aves BNC2 35
  • 83.41 (n)
  • 90.52 (a)
BNC2 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BNC2 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bnc2 35
  • 76.94 (n)
  • 82.61 (a)
zebrafish
(Danio rerio)
Actinopterygii bnc2 36
  • 61 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta disco 36
  • 25 (a)
ManyToMany
disco-r 36
  • 13 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea F55C5.11 36
  • 33 (a)
OneToMany
Species with no ortholog for BNC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BNC2 Gene

ENSEMBL:
Gene Tree for BNC2 (if available)
TreeFam:
Gene Tree for BNC2 (if available)

Paralogs for BNC2 Gene

Paralogs for BNC2 Gene

genes like me logo Genes that share paralogs with BNC2: view

Variants for BNC2 Gene

Sequence variations from dbSNP and Humsavar for BNC2 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs725011 -- 16,591,808(-) TTCTG(A/G)TTACC intron-variant
rs729330 -- 16,485,865(+) TCTCA(A/C)TCCCC intron-variant
rs755180 -- 16,474,004(-) TTATT(C/T)AGACA intron-variant
rs943737 -- 16,519,205(+) CATGA(C/T)AAATC intron-variant
rs943738 -- 16,519,379(+) GAATT(A/G)GAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BNC2 Gene

Variant ID Type Subtype PubMed ID
nsv524954 CNV Loss 19592680
esv272810 CNV Insertion 20981092
esv267687 CNV Insertion 20981092
dgv262n6 CNV Loss 16902084
nsv892646 CNV Loss 21882294
nsv892647 CNV Gain 21882294
nsv466265 CNV Loss 19166990
esv2738238 CNV Deletion 23290073
nsv824866 CNV Loss 20364138
nsv528443 CNV Loss 19592680
nsv524264 CNV Gain 19592680
dgv2292e1 CNV Complex 17122850
nsv892648 CNV Gain 21882294
esv1725129 CNV Deletion 17803354
nsv892649 CNV Gain 21882294
esv269036 CNV Insertion 20981092
esv273823 CNV Insertion 20981092
nsv892650 CNV Gain 21882294
nsv510183 CNV Loss 20534489
esv1256705 CNV Insertion 17803354
nsv518608 CNV Loss 19592680
nsv892651 CNV Loss 21882294
nsv892652 CNV Gain 21882294
esv2738240 CNV Deletion 23290073
esv2738241 CNV Deletion 23290073
esv2675274 CNV Deletion 23128226
esv993349 CNV Deletion 20482838
esv1359645 CNV Insertion 17803354
esv1378850 CNV Deletion 17803354
nsv892653 CNV Loss 21882294

Relevant External Links for BNC2 Gene

HapMap Linkage Disequilibrium report
BNC2
Human Gene Mutation Database (HGMD)
BNC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BNC2 Gene

Disorders for BNC2 Gene

Relevant External Links for BNC2

Genetic Association Database (GAD)
BNC2
Human Genome Epidemiology (HuGE) Navigator
BNC2
genes like me logo Genes that share disorders with BNC2: view

No data available for UniProtKB/Swiss-Prot for BNC2 Gene

Publications for BNC2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. Basonuclin 2: an extremely conserved homolog of the zinc finger protein basonuclin. (PMID: 14988505) Vanhoutteghem A. … Djian P. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 23
  3. Molecular genetics of successful smoking cessation: convergent genome-wide association study results. (PMID: 18519826) Uhl G.R. … Lerman C. (Arch. Gen. Psychiatry 2008) 3 48
  4. A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2. (PMID: 19648919) Song H. … Gayther S.A. (Nat. Genet. 2009) 3 48
  5. A genome-wide association study identifies a novel major locus for glycemic control in type 1 diabetes, as measured by both A1C and glucose. (PMID: 19875614) Paterson A.D. … Bull S.B. (Diabetes 2010) 3 48

Products for BNC2 Gene

Sources for BNC2 Gene

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