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Aliases for BMS1P4 Gene

Aliases for BMS1P4 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 4 2 3 5
  • BMS1L Pseudogene 4 2 3
  • BMS1 Pseudogene 4 2 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • BMS1LP4 3

External Ids for BMS1P4 Gene

Previous HGNC Symbols for BMS1P4 Gene

  • BMS1LP4

Previous GeneCards Identifiers for BMS1P4 Gene

  • GC10U900833
  • GC10M075147
  • GC10M075459
  • GC10M069454
  • GC10M075461

Summaries for BMS1P4 Gene

GeneCards Summary for BMS1P4 Gene

BMS1P4 (BMS1, Ribosome Biogenesis Factor Pseudogene 4) is a Pseudogene.

Additional gene information for BMS1P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P4 Gene

Genomics for BMS1P4 Gene

Regulatory Elements for BMS1P4 Gene

Enhancers for BMS1P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H073964 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 26.3 -236.7 -236686 6 PKNOX1 SIN3A FEZF1 ZNF2 ETS1 GTF3C2 GLIS2 ATF7 FOS SP3 SEC24C GLUD1P3 ENSG00000272140 DUSP8P5 BMS1P4 AP3M1 ENSG00000242288 ECD ZSWIM8 RPL17P50
GH10H073584 1.6 Ensembl ENCODE dbSUPER 22.8 +144.2 144174 2 PKNOX1 FOXA2 ARID4B FEZF1 DMAP1 ZNF2 YY1 ZNF766 CBX5 FOS ENSG00000272140 AGAP5 GLUD1P3 SEC24C NUDT13 DUSP8P5 ZSWIM8 BMS1P4 ZSWIM8-AS1 ENSG00000242288
GH10H073991 1.5 Ensembl ENCODE dbSUPER 21.3 -262.1 -262092 2 HDGF PKNOX1 ATF1 TCF12 ZNF766 GATA2 FOS ATF7 RUNX3 CAVIN1 NDST2 AP3M1 ENSG00000272140 BMS1P4 ZSWIM8 ZSWIM8-AS1 SEC24C ECD VCL GLUD1P3
GH10H073250 1.4 ENCODE dbSUPER 20.5 +478.2 478181 3 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ECD NUDT13 DNAJB12 AP3M1 NDST2 ZSWIM8 SEC24C ENSG00000272140 GLUD1P3 ENSG00000242288
GH10H073930 1.2 Ensembl ENCODE 20.9 -200.3 -200294 1 HDGF PKNOX1 ATF1 ARNT TCF12 ATF7 CAVIN1 REST ZNF592 SNIP1 GLUD1P3 ECD ENSG00000272140 AGAP5 DUSP8P5 SEC24C ZSWIM8 KAT6B AP3M1 BMS1P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BMS1P4 on UCSC Golden Path with GeneCards custom track

Promoters for BMS1P4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000029854 14 2201 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for BMS1P4 Gene

Chromosome:
10
Start:
73,699,151 bp from pter
End:
73,730,514 bp from pter
Size:
31,364 bases
Orientation:
Minus strand

Genomic View for BMS1P4 Gene

Genes around BMS1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P4 Gene

Proteins for BMS1P4 Gene

Post-translational modifications for BMS1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P4 Gene

Domains & Families for BMS1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P4 Gene

Function for BMS1P4 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for BMS1P4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P4 Gene

Localization for BMS1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMS1P4 Gene

Pathways & Interactions for BMS1P4 Gene

SuperPathways for BMS1P4 Gene

No Data Available

Interacting Proteins for BMS1P4 Gene

Gene Ontology (GO) - Biological Process for BMS1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P4 Gene

Drugs & Compounds for BMS1P4 Gene

No Compound Related Data Available

Transcripts for BMS1P4 Gene

mRNA/cDNA for BMS1P4 Gene

(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BMS1P4 Gene

BMS1 pseudogene 4:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for BMS1P4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P4 Gene

No ASD Table

Relevant External Links for BMS1P4 Gene

GeneLoc Exon Structure for
BMS1P4
ECgene alternative splicing isoforms for
BMS1P4

Expression for BMS1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P4 Gene:

BMS1P4

SOURCE GeneReport for Unigene cluster for BMS1P4 Gene:

Hs.709171
genes like me logo Genes that share expression patterns with BMS1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P4 Gene

Orthologs for BMS1P4 Gene

Evolution for BMS1P4 Gene

ENSEMBL:
Gene Tree for BMS1P4 (if available)
TreeFam:
Gene Tree for BMS1P4 (if available)

No data available for Orthologs for BMS1P4 Gene

Paralogs for BMS1P4 Gene

No data available for Paralogs for BMS1P4 Gene

Variants for BMS1P4 Gene

Sequence variations from dbSNP and Humsavar for BMS1P4 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000050687 -- 73,701,579(+) ACCTG(C/G)AGAAT intron-variant
rs1000104499 -- 73,699,673(+) TGCCC(C/T)CGTGA intron-variant, upstream-variant-2KB
rs1000116395 -- 73,730,263(+) CCCCG(C/T)CCGGG intron-variant, upstream-variant-2KB
rs1000421918 -- 73,701,824(+) GAGAG(A/G)TGTAG intron-variant
rs1000613531 -- 73,731,359(+) ACTGA(-/T)TTTTT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BMS1P4 Gene

Variant ID Type Subtype PubMed ID
esv24583 CNV loss 19812545
nsv1035634 CNV gain 25217958
nsv825468 CNV gain 20364138
nsv831912 CNV gain 17160897
nsv948068 CNV duplication 23825009
nsv948069 CNV duplication 23825009
nsv948070 CNV duplication 23825009

Relevant External Links for BMS1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P4 Gene

Disorders for BMS1P4 Gene

Relevant External Links for BMS1P4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1P4

No disorders were found for BMS1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P4 Gene

Publications for BMS1P4 Gene

  1. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M … Jackson MS (Genome research 2002) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for BMS1P4 Gene

Sources for BMS1P4 Gene

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