Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BMS1P20 Gene

Aliases for BMS1P20 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 20 2 3 5
  • BMS1 Pseudogene 20 2 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • Immunoglobulin Light Chain Variable Region 3
  • Anti-HIV-1 V3 Immunoglobulin Light Chain 3
  • Immunoglobulin Lambda-1 Variable Region 3
  • Immunoglobulin Heavy Chain V Region 3
  • Immunoglobulin Lamda Chain 3
  • IGLV1 3
  • IGLV 3
  • IGL 3

External Ids for BMS1P20 Gene

Previous GeneCards Identifiers for BMS1P20 Gene

  • GC22P022667
  • GC22P022669

Summaries for BMS1P20 Gene

Entrez Gene Summary for BMS1P20 Gene

  • This locus appears to be a transcribed pseudogene of the BMS1 homolog of yeast ribosome assembly protein on chromosome 10 that has arisen from duplication of the 3' half of the parent gene. Frameshifts and premature stop codons are present in this pseudogene compared to the parent gene. This gene lies in the immunoglobulin lambda gene cluster on chromosome 22q11.21.[provided by RefSeq, Mar 2009]

GeneCards Summary for BMS1P20 Gene

BMS1P20 (BMS1, Ribosome Biogenesis Factor Pseudogene 20) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P20 Gene

Genomics for BMS1P20 Gene

Regulatory Elements for BMS1P20 Gene

Enhancers for BMS1P20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F022297 0.5 ENCODE 0.8 +0.0 4 1.3 ATF1 CREB3L1 ARID4B SIN3A GLI4 ZNF48 GLIS2 KLF13 SP3 NCOA1 ENSG00000272779 BMS1P20 PIR53381
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BMS1P20 on UCSC Golden Path with GeneCards custom track

Genomic Location for BMS1P20 Gene

Chromosome:
22
Start:
22,298,098 bp from pter
End:
22,322,968 bp from pter
Size:
24,871 bases
Orientation:
Plus strand

Genomic View for BMS1P20 Gene

Genes around BMS1P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P20 Gene

Proteins for BMS1P20 Gene

Post-translational modifications for BMS1P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P20 Gene

Domains & Families for BMS1P20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P20 Gene

Function for BMS1P20 Gene

Phenotypes for BMS1P20 Gene

GenomeRNAi human phenotypes for BMS1P20:
genes like me logo Genes that share phenotypes with BMS1P20: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P20 Gene

Localization for BMS1P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BMS1P20 Gene

Pathways & Interactions for BMS1P20 Gene

SuperPathways for BMS1P20 Gene

No Data Available

Interacting Proteins for BMS1P20 Gene

Gene Ontology (GO) - Biological Process for BMS1P20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P20 Gene

Transcripts for BMS1P20 Gene

mRNA/cDNA for BMS1P20 Gene

(1) REFSEQ mRNAs :
(19) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P20 Gene

No ASD Table

Relevant External Links for BMS1P20 Gene

GeneLoc Exon Structure for
BMS1P20
ECgene alternative splicing isoforms for
BMS1P20

Expression for BMS1P20 Gene

mRNA expression in normal human tissues for BMS1P20 Gene

Protein differential expression in normal tissues from HIPED for BMS1P20 Gene

This gene is overexpressed in Urine (50.7) and Serum (18.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for BMS1P20 Gene



Protein tissue co-expression partners for BMS1P20 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P20 Gene:

BMS1P20
genes like me logo Genes that share expression patterns with BMS1P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BMS1P20 Gene

Orthologs for BMS1P20 Gene

Evolution for BMS1P20 Gene

ENSEMBL:
Gene Tree for BMS1P20 (if available)
TreeFam:
Gene Tree for BMS1P20 (if available)

No data available for Orthologs for BMS1P20 Gene

Paralogs for BMS1P20 Gene

No data available for Paralogs for BMS1P20 Gene

Variants for BMS1P20 Gene

Sequence variations from dbSNP and Humsavar for BMS1P20 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10427551 -- 22,308,405(+) ctggt(A/T)tcaaa intron-variant
rs1044437 -- 22,306,953(+) AGAAC(C/T)TTGAC intron-variant
rs1044439 -- 22,306,963(+) CCCCC(A/G/T)TTACC intron-variant
rs1044442 -- 22,307,200(+) CATCC(C/T)GCTCT nc-transcript-variant
rs1044444 -- 22,307,262(+) AGCAT(A/G)TGCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P20 Gene

Variant ID Type Subtype PubMed ID
dgv1295e212 CNV gain 25503493
dgv22e196 CNV deletion 17116639
dgv2598e59 CNV duplication 20981092
dgv37n64 CNV loss 17921354
dgv4504n100 CNV gain 25217958
dgv4505n100 CNV loss 25217958
dgv548n27 CNV loss 19166990
dgv731n67 CNV loss 20364138
dgv826e214 CNV loss 21293372
esv2422480 CNV deletion 17116639
esv2507410 CNV loss 19546169
esv3369337 CNV duplication 20981092
esv33844 CNV gain 17666407
esv3647351 CNV loss 21293372
esv3647352 CNV gain 21293372
esv3893447 CNV gain 25118596
nsv1058897 CNV loss 25217958
nsv1076537 CNV duplication 25765185
nsv1123579 CNV deletion 24896259
nsv1141415 CNV duplication 24896259
nsv1146169 CNV duplication 26484159
nsv459421 CNV gain 19166990
nsv459450 CNV loss 19166990
nsv469749 CNV loss 16826518
nsv526328 CNV gain 19592680
nsv588348 CNV gain 21841781
nsv588391 CNV loss 21841781
nsv7350 OTHER inversion 18451855
nsv817937 CNV loss 17921354
nsv817943 CNV loss 17921354
nsv820089 CNV gain 19587683
nsv828977 CNV loss 20364138
nsv828979 CNV gain+loss 20364138
nsv834147 CNV loss 17160897
nsv953047 CNV duplication 24416366
nsv962845 CNV duplication 23825009
nsv962846 CNV duplication 23825009
nsv964596 CNV duplication 23825009

Relevant External Links for BMS1P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P20 Gene

Disorders for BMS1P20 Gene

Relevant External Links for BMS1P20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1P20

No disorders were found for BMS1P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P20 Gene

Publications for BMS1P20 Gene

  1. A broad range of mutations in HIV-1 neutralizing human monoclonal antibodies specific for V2, V3, and the CD4 binding site. (PMID: 25965315) Li L. … Gorny M.K. (Mol. Immunol. 2015) 3 64
  2. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. (PMID: 24590074) Doria-Rose N.A. … Mascola J.R. (Nature 2014) 3 64
  3. Barcode-enabled sequencing of plasmablast antibody repertoires in rheumatoid arthritis. (PMID: 24965753) Tan Y.C. … Robinson W.H. ( 2014) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Isolation and characterization of human monoclonal antibodies from individuals infected with West Nile Virus. (PMID: 16809304) Throsby M. … de Kruif J. (J. Virol. 2006) 3 64

Products for BMS1P20 Gene

Sources for BMS1P20 Gene

Content
Loading form....