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Aliases for BMS1P20 Gene

Aliases for BMS1P20 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 20 2 3 5
  • BMS1 Pseudogene 20 2 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • BMS1 Ribosome Biogenesis Factor Pseudogene 20 3
  • Immunoglobulin Light Chain Variable Region 3
  • Anti-HIV-1 V3 Immunoglobulin Light Chain 3
  • Immunoglobulin Lambda-1 Variable Region 3
  • Immunoglobulin Heavy Chain V Region 3
  • Immunoglobulin Lamda Chain 3
  • IGLV1 3
  • IGLV 3
  • IGL 3

External Ids for BMS1P20 Gene

Previous GeneCards Identifiers for BMS1P20 Gene

  • GC22P022667
  • GC22P022669

Summaries for BMS1P20 Gene

Entrez Gene Summary for BMS1P20 Gene

  • This locus appears to be a transcribed pseudogene of the BMS1 homolog of yeast ribosome assembly protein on chromosome 10 that has arisen from duplication of the 3' half of the parent gene. Frameshifts and premature stop codons are present in this pseudogene compared to the parent gene. This gene lies in the immunoglobulin lambda gene cluster on chromosome 22q11.21.[provided by RefSeq, Mar 2009]

GeneCards Summary for BMS1P20 Gene

BMS1P20 (BMS1, Ribosome Biogenesis Factor Pseudogene 20) is a Pseudogene. Among its related pathways are Immune response Role of DAP12 receptors in NK cells and Development Angiotensin activation of ERK.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P20 Gene

Genomics for BMS1P20 Gene

Genomic Location for BMS1P20 Gene

Chromosome:
22
Start:
22,298,098 bp from pter
End:
22,322,968 bp from pter
Size:
24,871 bases
Orientation:
Plus strand

Genomic View for BMS1P20 Gene

Genes around BMS1P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P20 Gene

No data available for Regulatory Elements for BMS1P20 Gene

Proteins for BMS1P20 Gene

Post-translational modifications for BMS1P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P20 Gene

Domains & Families for BMS1P20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P20 Gene

Function for BMS1P20 Gene

Phenotypes for BMS1P20 Gene

GenomeRNAi human phenotypes for BMS1P20:
genes like me logo Genes that share phenotypes with BMS1P20: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P20 Gene

Localization for BMS1P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BMS1P20 Gene

Drugs & Compounds for BMS1P20 Gene

No Compound Related Data Available

Transcripts for BMS1P20 Gene

mRNA/cDNA for BMS1P20 Gene

(1) REFSEQ mRNAs :
(19) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P20 Gene

No ASD Table

Relevant External Links for BMS1P20 Gene

GeneLoc Exon Structure for
BMS1P20
ECgene alternative splicing isoforms for
BMS1P20

Expression for BMS1P20 Gene

mRNA expression in normal human tissues for BMS1P20 Gene

Protein differential expression in normal tissues from HIPED for BMS1P20 Gene

This gene is overexpressed in Urine (50.7) and Serum (18.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from for BMS1P20 Gene



genes like me logo Genes that share expression patterns with BMS1P20: view

Protein tissue co-expression partners for BMS1P20 Gene

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BMS1P20 Gene

Orthologs for BMS1P20 Gene

Evolution for BMS1P20 Gene

ENSEMBL:
Gene Tree for BMS1P20 (if available)
TreeFam:
Gene Tree for BMS1P20 (if available)

No data available for Orthologs for BMS1P20 Gene

Paralogs for BMS1P20 Gene

No data available for Paralogs for BMS1P20 Gene

Variants for BMS1P20 Gene

Sequence variations from dbSNP and Humsavar for BMS1P20 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs738895 -- 22,315,393(+) CTGGC(A/G)AACAA intron-variant
rs2012017 -- 22,320,244(+) atgtg(A/C)cacca intron-variant
rs1807649 -- 22,319,889(+) gcgat(G/T)ctcct intron-variant
rs1807696 -- 22,303,192(+) GGGCT(C/G)ACAGA intron-variant
rs737765 -- 22,319,284(+) CCTGG(C/T)CTAGT intron-variant

Relevant External Links for BMS1P20 Gene

HapMap Linkage Disequilibrium report
BMS1P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BMS1P20 Gene

Disorders for BMS1P20 Gene

Relevant External Links for BMS1P20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1P20

No disorders were found for BMS1P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P20 Gene

Publications for BMS1P20 Gene

  1. A broad range of mutations in HIV-1 neutralizing human monoclonal antibodies specific for V2, V3, and the CD4 binding site. (PMID: 25965315) Li L. … Gorny M.K. (Mol. Immunol. 2015) 3 67
  2. Barcode-enabled sequencing of plasmablast antibody repertoires in rheumatoid arthritis. (PMID: 24965753) Tan Y.C. … Robinson W.H. ( 2014) 3
  3. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. (PMID: 24590074) Doria-Rose N.A. … Mascola J.R. (Nature 2014) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Isolation and characterization of human monoclonal antibodies from individuals infected with West Nile Virus. (PMID: 16809304) Throsby M. … de Kruif J. (J. Virol. 2006) 3

Products for BMS1P20 Gene

Sources for BMS1P20 Gene

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