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Aliases for BMS1P2 Gene

Aliases for BMS1P2 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 2 2 5
  • BMS1, Ribosome Biogenesis Factor Pseudogene 6 2 3
  • BMS1L Pseudogene 2 2 3
  • BMS1L Pseudogene 6 2 3
  • BMS1 Pseudogene 2 2 3
  • BMS1 Pseudogene 6 2 3
  • BMS1 Homolog, Ribosome Assembly Protein Pseudogene 3
  • BMS1-Like, Ribosome Assembly Protein Pseudogene 3
  • BA302K17.2 3
  • BMS1LP2 3
  • BMS1LP6 3
  • BMS1P6 3

External Ids for BMS1P2 Gene

Previous HGNC Symbols for BMS1P2 Gene

  • BMS1LP2
  • BMS1P6
  • BMS1LP6

Previous GeneCards Identifiers for BMS1P2 Gene

  • GC10U900832
  • GC10M046651
  • GC10M047192
  • GC10M047228
  • GC10P046787

Summaries for BMS1P2 Gene

GeneCards Summary for BMS1P2 Gene

BMS1P2 (BMS1, Ribosome Biogenesis Factor Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P2 Gene

Genomics for BMS1P2 Gene

Regulatory Elements for BMS1P2 Gene

Enhancers for BMS1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G046555 1.4 Ensembl ENCODE dbSUPER 13.8 +996.8 996834 2.9 HDGF SIN3A GLI4 RAD21 KLF7 EGR2 ZNF202 ZNF654 SP3 ZNF680 BMS1P1 WASHC2C PARGP1 BMS1P2 AGAP9 AGAP10P RHEBP1 GPRIN2 PIR32632
GH10G048385 0.7 ENCODE 19.6 -831.2 -831190 0.2 ZNF174 NFIA NFIB ZIK1 ZNF195 ELF1 ZNF491 NFIC ZNF544 ZNF350 BMS1P2 AGAP9 ENSG00000279822 MAPK8
GH10G047557 0.6 Ensembl 0.4 -5.2 -5178 3.0 ZNF263 L3MBTL2 MAFG ATF2 ZNF316 GATA3 NFE2L1 NFE2 EMSY NFE2L2 GLUD1P8 BMS1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BMS1P2 on UCSC Golden Path with GeneCards custom track

Promoters for BMS1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000027682 23 1801 PKNOX1 ZNF493 ZFP64 ZBTB40 ZNF121 ZNF354C ZNF202 ZNF654 ZNF680 ZBTB11

Genomic Location for BMS1P2 Gene

Chromosome:
10
Start:
47,535,574 bp from pter
End:
47,553,523 bp from pter
Size:
17,950 bases
Orientation:
Minus strand

Genomic View for BMS1P2 Gene

Genes around BMS1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P2 Gene

Proteins for BMS1P2 Gene

Post-translational modifications for BMS1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P2 Gene

Domains & Families for BMS1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P2 Gene

Function for BMS1P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P2 Gene

Localization for BMS1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BMS1P2 Gene

Pathways & Interactions for BMS1P2 Gene

SuperPathways for BMS1P2 Gene

No Data Available

Interacting Proteins for BMS1P2 Gene

Gene Ontology (GO) - Biological Process for BMS1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P2 Gene

Drugs & Compounds for BMS1P2 Gene

No Compound Related Data Available

Transcripts for BMS1P2 Gene

mRNA/cDNA for BMS1P2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P2 Gene

No ASD Table

Relevant External Links for BMS1P2 Gene

GeneLoc Exon Structure for
BMS1P2
ECgene alternative splicing isoforms for
BMS1P2

Expression for BMS1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P2 Gene:

BMS1P2
genes like me logo Genes that share expression patterns with BMS1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P2 Gene

Orthologs for BMS1P2 Gene

Evolution for BMS1P2 Gene

ENSEMBL:
Gene Tree for BMS1P2 (if available)
TreeFam:
Gene Tree for BMS1P2 (if available)

No data available for Orthologs for BMS1P2 Gene

Paralogs for BMS1P2 Gene

No data available for Paralogs for BMS1P2 Gene

Variants for BMS1P2 Gene

Sequence variations from dbSNP and Humsavar for BMS1P2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1046757 -- 47,537,607(-) GTAAT(A/G)TGTGT intron-variant, nc-transcript-variant
rs112356944 -- 47,549,487(-) CGTAT(A/G)TGGTG intron-variant
rs113565478 -- 47,544,077(-) CGTGC(A/G)TGCCT intron-variant
rs113699210 -- 47,539,867(-) TTTTG(G/T)ATTCT intron-variant
rs1807444 -- 47,539,446(+) ATATG(C/T)GGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P2 Gene

Variant ID Type Subtype PubMed ID
dgv137e199 CNV deletion 23128226
dgv443n106 CNV deletion 24896259
nsv1068309 CNV deletion 25765185
nsv550805 CNV loss 21841781
nsv821424 CNV duplication 20802225
nsv971755 CNV duplication 23825009

Relevant External Links for BMS1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P2 Gene

Disorders for BMS1P2 Gene

Relevant External Links for BMS1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1P2

No disorders were found for BMS1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P2 Gene

Publications for BMS1P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  4. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M. … Jackson M.S. (Genome Res. 2002) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for BMS1P2 Gene

Sources for BMS1P2 Gene

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