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Aliases for BMS1P17 Gene

Aliases for BMS1P17 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 17 2 3 5
  • BMS1 Pseudogene 17 2 3
  • Ribosome Biogenesis Protein BMS1 Homolog Pseudogene 3
  • LINC00516 3

External Ids for BMS1P17 Gene

Previous GeneCards Identifiers for BMS1P17 Gene

  • GC14U901384
  • GC14M019671

Summaries for BMS1P17 Gene

GeneCards Summary for BMS1P17 Gene

BMS1P17 (BMS1, Ribosome Biogenesis Factor Pseudogene 17) is a Pseudogene.

Additional gene information for BMS1P17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P17 Gene

Genomics for BMS1P17 Gene

Regulatory Elements for BMS1P17 Gene

Enhancers for BMS1P17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H019335 0.2 Ensembl 0.3 +34.2 34197 1 DUXAP10 BMS1P17
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BMS1P17 on UCSC Golden Path with GeneCards custom track

Genomic Location for BMS1P17 Gene

Chromosome:
14
Start:
19,301,704 bp from pter
End:
19,316,914 bp from pter
Size:
15,211 bases
Orientation:
Plus strand

Genomic View for BMS1P17 Gene

Genes around BMS1P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P17 Gene

Proteins for BMS1P17 Gene

Post-translational modifications for BMS1P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P17 Gene

Domains & Families for BMS1P17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P17 Gene

Function for BMS1P17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P17 Gene

Localization for BMS1P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BMS1P17 Gene

Pathways & Interactions for BMS1P17 Gene

SuperPathways for BMS1P17 Gene

No Data Available

Interacting Proteins for BMS1P17 Gene

Gene Ontology (GO) - Biological Process for BMS1P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P17 Gene

Drugs & Compounds for BMS1P17 Gene

No Compound Related Data Available

Transcripts for BMS1P17 Gene

mRNA/cDNA for BMS1P17 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P17 Gene

No ASD Table

Relevant External Links for BMS1P17 Gene

GeneLoc Exon Structure for
BMS1P17
ECgene alternative splicing isoforms for
BMS1P17

Expression for BMS1P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P17 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P17 Gene:

BMS1P17
genes like me logo Genes that share expression patterns with BMS1P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P17 Gene

Orthologs for BMS1P17 Gene

Evolution for BMS1P17 Gene

ENSEMBL:
Gene Tree for BMS1P17 (if available)
TreeFam:
Gene Tree for BMS1P17 (if available)

No data available for Orthologs for BMS1P17 Gene

Paralogs for BMS1P17 Gene

No data available for Paralogs for BMS1P17 Gene

Variants for BMS1P17 Gene

Sequence variations from dbSNP and Humsavar for BMS1P17 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1008024185 -- 19,310,966(-) CAGAA(A/C)GTAGA intron-variant
rs1008494515 -- 19,305,819(-) TAACT(A/G)GTAGC intron-variant, upstream-variant-2KB
rs1011425369 -- 19,312,432(-) TATGG(A/C)GAACA intron-variant
rs1011769133 -- 19,311,000(-) TATGA(C/G)GTACC intron-variant
rs1012597122 -- 19,315,435(-) ACAGA(A/G)TCTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P17 Gene

Variant ID Type Subtype PubMed ID
dgv1161e59 CNV duplication 20981092
dgv1162e59 CNV duplication 20981092
dgv1163e59 CNV duplication 20981092
dgv1175e59 CNV duplication 20981092
dgv1176e59 CNV duplication 20981092
dgv168n111 CNV duplication 26073780
dgv1749n100 CNV gain 25217958
dgv1750n100 CNV gain+loss 25217958
dgv1751n100 CNV loss 25217958
dgv1752n100 CNV gain 25217958
dgv1753n100 CNV gain 25217958
dgv1754n100 CNV gain+loss 25217958
dgv1755n100 CNV gain 25217958
dgv1756n100 CNV loss 25217958
dgv1757n100 CNV gain 25217958
dgv1758n100 CNV loss 25217958
dgv1759n100 CNV gain 25217958
dgv1760n100 CNV gain+loss 25217958
dgv1761n100 CNV gain+loss 25217958
dgv1762n100 CNV loss 25217958
dgv1763n100 CNV gain 25217958
dgv1764n100 CNV loss 25217958
dgv1765n100 CNV gain+loss 25217958
dgv1766n100 CNV gain 25217958
dgv1767n100 CNV loss 25217958
dgv1768n100 CNV gain 25217958
dgv1769n100 CNV gain 25217958
dgv1770n100 CNV gain+loss 25217958
dgv1771n100 CNV loss 25217958
dgv2419n106 CNV duplication 24896259
dgv2522e59 CNV duplication 20981092
dgv2523e59 CNV duplication 20981092
dgv2524e59 CNV duplication 20981092
dgv30n82 CNV duplication 23825009
dgv33e203 CNV gain+loss 21179565
dgv3489n54 CNV gain 21841781
dgv3494n54 CNV loss 21841781
dgv3511n54 CNV loss 21841781
dgv360n67 CNV gain 20364138
dgv4450n100 CNV gain 25217958
dgv4451n100 CNV gain+loss 25217958
dgv4452n100 CNV loss 25217958
dgv4453n100 CNV gain 25217958
dgv4455n100 CNV loss 25217958
dgv45e180 CNV loss 20482838
dgv71n68 CNV gain 17160897
dgv7934n54 CNV gain 21841781
dgv7937n54 CNV gain 21841781
dgv98e203 CNV gain+loss 21179565
esv1005804 OTHER inversion 20482838
esv23873 CNV gain+loss 19812545
esv25550 CNV gain+loss 19812545
esv2748433 CNV deletion 23290073
esv2759971 CNV gain+loss 17122850
esv33426 CNV gain+loss 17666407
esv33527 CNV gain+loss 17666407
esv3367189 CNV duplication 20981092
esv3376454 CNV duplication 20981092
esv3386528 CNV duplication 20981092
esv3395652 CNV duplication 20981092
esv3413501 CNV duplication 20981092
esv3415837 CNV duplication 20981092
esv3428491 CNV duplication 20981092
esv3439345 CNV duplication 20981092
esv3445630 CNV duplication 20981092
esv3448269 CNV duplication 20981092
esv3584479 CNV gain 24956385
esv3584775 CNV loss 24956385
esv3892461 CNV gain 25118596
esv3892464 CNV gain 25118596
esv3893421 CNV gain 25118596
esv995567 CNV loss 20482838
nsv1037353 CNV gain 25217958
nsv1048150 CNV gain+loss 25217958
nsv1048393 CNV gain+loss 25217958
nsv1061008 CNV loss 25217958
nsv1075859 CNV duplication 25765185
nsv1075860 CNV duplication 25765185
nsv1075861 CNV duplication 25765185
nsv1076404 CNV duplication 25765185
nsv1076405 CNV duplication 25765185
nsv1077405 CNV duplication 25765185
nsv1110856 OTHER inversion 24896259
nsv1132379 CNV duplication 24896259
nsv1132380 CNV duplication 24896259
nsv1141240 CNV duplication 24896259
nsv1148767 CNV duplication 26484159
nsv1148918 CNV duplication 26484159
nsv1150052 CNV duplication 26484159
nsv1150751 CNV duplication 26484159
nsv1160151 CNV duplication 26073780
nsv1160152 CNV duplication 26073780
nsv1160722 CNV duplication 26073780
nsv428292 CNV gain+loss 18775914
nsv428384 CNV gain+loss 18775914
nsv433422 CNV gain 18776910
nsv436829 CNV insertion 17901297
nsv469815 CNV gain+loss 16826518
nsv471709 CNV gain+loss 15918152
nsv563705 CNV loss 21841781
nsv563706 CNV loss 21841781
nsv563709 CNV loss 21841781
nsv563718 CNV loss 21841781
nsv563719 CNV loss 21841781
nsv563720 CNV loss 21841781
nsv588004 CNV gain 21841781
nsv588011 CNV gain 21841781
nsv588016 CNV gain+loss 21841781
nsv7248 OTHER inversion 18451855
nsv819711 CNV loss 19587683
nsv821525 CNV duplication 20802225
nsv821691 CNV loss 15273396
nsv832730 CNV gain+loss 17160897
nsv832731 CNV gain 17160897
nsv9117 CNV gain+loss 18304495
nsv951950 CNV duplication 24416366
nsv951955 CNV duplication 24416366
nsv953667 CNV duplication 24416366
nsv977434 CNV duplication 23825009
nsv979616 CNV duplication 23825009
nsv9866 CNV gain+loss 18304495

Relevant External Links for BMS1P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P17 Gene

Disorders for BMS1P17 Gene

Relevant External Links for BMS1P17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1P17

No disorders were found for BMS1P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P17 Gene

Publications for BMS1P17 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for BMS1P17 Gene

Sources for BMS1P17 Gene

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