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Aliases for BMS1P1 Gene

Aliases for BMS1P1 Gene

  • BMS1, Ribosome Biogenesis Factor Pseudogene 1 2 5
  • BMS1, Ribosome Biogenesis Factor Pseudogene 5 2 3
  • BMS1L Pseudogene 1 2 3
  • BMS1L Pseudogene 5 2 3
  • BMS1 Pseudogene 1 2 3
  • BMS1 Pseudogene 5 2 3
  • BA556L1.3 3
  • BMS1LP1 3
  • BMS1LP5 3
  • BMS1P5 3

External Ids for BMS1P1 Gene

Previous HGNC Symbols for BMS1P1 Gene

  • BMS1LP1
  • BMS1P5
  • BMS1LP5

Previous GeneCards Identifiers for BMS1P1 Gene

  • GC10M046160
  • GC10M046732
  • GC10M043574

Summaries for BMS1P1 Gene

GeneCards Summary for BMS1P1 Gene

BMS1P1 (BMS1, Ribosome Biogenesis Factor Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1P1 Gene

Genomics for BMS1P1 Gene

Regulatory Elements for BMS1P1 Gene

Enhancers for BMS1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G046522 1.4 Ensembl ENCODE 71.4 -262.0 -261976 3.6 HDGF ARNT SIN3A YBX1 ZNF2 ZBTB7B ZNF766 ZNF207 ZNF143 FOS PARGP1 AGAP4 AGAP9 BMS1P1 WASHC2C FAM21FP LOC105378289 FAM35BP ANXA8L1 PTPN20
GH10G046555 1.4 Ensembl ENCODE dbSUPER 20.3 -230.0 -229985 2.9 HDGF SIN3A GLI4 RAD21 KLF7 EGR2 ZNF202 ZNF654 SP3 ZNF680 BMS1P1 WASHC2C PARGP1 BMS1P2 AGAP9 AGAP10P RHEBP1 GPRIN2 PIR32632
GH10G046091 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -692.1 -692057 7.0 ELF3 MLX ARID4B INSM2 DMAP1 RAD21 RARA GLIS2 RELB IKZF2 MSMB NCOA4 AGAP7P BMS1P1 FAM35BP TIMM23 GC10M046105 PIR51454 RPL23AP61
GH10G047383 1 ENCODE 10.3 +597.6 597606 1.9 HDGF HNRNPUL1 ATF1 SIN3A ZNF2 ZNF48 GLIS2 ZNF263 SP3 MXD4 AGAP9 BMS1P1 LOC105378289 ZNF488 RBP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BMS1P1 on UCSC Golden Path with GeneCards custom track

Promoters for BMS1P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000027609 226 1801 CTCF PKNOX1 KLF1 HINFP ZMYM3 ZIC2 ZBTB40 ZNF697 FOXM1 ZFHX2

Genomic Location for BMS1P1 Gene

Chromosome:
10
Start:
46,786,674 bp from pter
End:
46,811,989 bp from pter
Size:
25,316 bases
Orientation:
Plus strand

Genomic View for BMS1P1 Gene

Genes around BMS1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1P1 Gene

Proteins for BMS1P1 Gene

Post-translational modifications for BMS1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BMS1P1 Gene

Domains & Families for BMS1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BMS1P1 Gene

Function for BMS1P1 Gene

Phenotypes for BMS1P1 Gene

GenomeRNAi human phenotypes for BMS1P1:
genes like me logo Genes that share phenotypes with BMS1P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BMS1P1 Gene

Localization for BMS1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BMS1P1 Gene

Pathways & Interactions for BMS1P1 Gene

SuperPathways for BMS1P1 Gene

No Data Available

Interacting Proteins for BMS1P1 Gene

Gene Ontology (GO) - Biological Process for BMS1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BMS1P1 Gene

Drugs & Compounds for BMS1P1 Gene

No Compound Related Data Available

Transcripts for BMS1P1 Gene

mRNA/cDNA for BMS1P1 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1P1 Gene

No ASD Table

Relevant External Links for BMS1P1 Gene

GeneLoc Exon Structure for
BMS1P1
ECgene alternative splicing isoforms for
BMS1P1

Expression for BMS1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMS1P1 Gene:

BMS1P1
genes like me logo Genes that share expression patterns with BMS1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1P1 Gene

Orthologs for BMS1P1 Gene

Evolution for BMS1P1 Gene

ENSEMBL:
Gene Tree for BMS1P1 (if available)
TreeFam:
Gene Tree for BMS1P1 (if available)

No data available for Orthologs for BMS1P1 Gene

Paralogs for BMS1P1 Gene

No data available for Paralogs for BMS1P1 Gene

Variants for BMS1P1 Gene

Sequence variations from dbSNP and Humsavar for BMS1P1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1045719 -- 46,810,121(+) AAGGA(C/T)TTCAC intron-variant, nc-transcript-variant
rs1045720 -- 46,810,125(+) ATTTC(A/T)CCAGA intron-variant, nc-transcript-variant
rs111697927 -- 46,807,409(-) CACAC(A/G)CACAC intron-variant
rs112534966 -- 46,812,233(-) TGTGG(G/T)AAAGG intron-variant, downstream-variant-500B
rs112756149 -- 46,792,674(-) AAACA(C/T)AGTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1P1 Gene

Variant ID Type Subtype PubMed ID
dgv1120n54 CNV loss 21841781
dgv448n106 CNV deletion 24896259
dgv734n100 CNV gain 25217958
dgv737n100 CNV loss 25217958
dgv738n100 CNV loss 25217958
dgv739n100 CNV gain 25217958
dgv740n100 CNV gain+loss 25217958
dgv742n100 CNV loss 25217958
dgv743n100 CNV gain 25217958
esv2736152 CNV deletion 23290073
esv3578801 CNV loss 25503493
esv3584617 CNV loss 24956385
nsv1042820 CNV gain+loss 25217958
nsv1068692 CNV deletion 25765185
nsv1121807 CNV deletion 24896259
nsv1126251 CNV deletion 24896259
nsv1143634 CNV deletion 24896259
nsv1143636 CNV deletion 24896259
nsv550719 CNV loss 21841781
nsv550802 CNV loss 21841781
nsv821253 CNV deletion 20802225
nsv831850 CNV gain+loss 17160897
nsv947922 CNV duplication 23825009
nsv947960 CNV duplication 23825009
nsv951571 CNV deletion 24416366
nsv975690 CNV duplication 23825009
nsv975691 CNV duplication 23825009

Relevant External Links for BMS1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BMS1P1 Gene

Disorders for BMS1P1 Gene

Relevant External Links for BMS1P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1P1

No disorders were found for BMS1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BMS1P1 Gene

Publications for BMS1P1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M. … Jackson M.S. (Genome Res. 2002) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for BMS1P1 Gene

Sources for BMS1P1 Gene

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