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Aliases for BMS1 Gene

Aliases for BMS1 Gene

  • BMS1, Ribosome Biogenesis Factor 2 3 5
  • Ribosome Assembly Protein BMS1 Homolog 3 4
  • BMS1L 3 4
  • BMS1 Homolog, Ribosome Assembly Protein (Yeast) 2
  • BMS1-Like, Ribosome Assembly Protein (Yeast) 2
  • Ribosome Biogenesis Protein BMS1 Homolog 3
  • BMS1 Homolog, Ribosome Assembly Protein 3
  • BMS1-Like, Ribosome Assembly Protein 3
  • KIAA0187 4
  • ACC 3

External Ids for BMS1 Gene

Previous HGNC Symbols for BMS1 Gene

  • BMS1L

Previous GeneCards Identifiers for BMS1 Gene

  • GC10P042599
  • GC10P043277
  • GC10P039804

Summaries for BMS1 Gene

Entrez Gene Summary for BMS1 Gene

  • This gene likely encodes a ribosome assembly protein. A similar protein in yeast functions in 35S-rRNA processing, which includes a series of cleavage steps critical for formation of 40S ribosomes. Related pseudogenes exist on chromosomes 2, 9, 10, 15, 16, and 22.[provided by RefSeq, Mar 2009]

GeneCards Summary for BMS1 Gene

BMS1 (BMS1, Ribosome Biogenesis Factor) is a Protein Coding gene. Diseases associated with BMS1 include Aplasia Cutis Congenita, Nonsyndromic and Aplasia Cutis Congenita. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. GO annotations related to this gene include poly(A) RNA binding and GTPase activity.

UniProtKB/Swiss-Prot for BMS1 Gene

  • May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMS1 Gene

Genomics for BMS1 Gene

Regulatory Elements for BMS1 Gene

Enhancers for BMS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G042781 1.2 ENCODE 47.5 +0.3 255 2.2 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC BMS1 EIF3LP2 ZNF32-AS2 ZNF487 LINC00839 ENSG00000259869 LOC441666 GC10M042762
GH10G043392 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.3 +619.2 619184 18.3 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF32 ZNF37BP LOC105378272 ENSG00000273008 BMS1 ZNF239 ZNF32-AS1 HNRNPA3P1 ZNF32-AS2 RASGEF1A
GH10G043416 1.7 FANTOM5 ENCODE dbSUPER 12.8 +637.0 637038 6.1 MLX CREB3L1 ZFP64 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC PPARGC1A LOC105378272 BMS1 ZNF239 ENSG00000259869 HNRNPF CSGALNACT2 GC10M043418 GC10P043423
GH10G043109 1.3 Ensembl ENCODE 15.6 +328.3 328281 1.7 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZBTB7B GLIS2 CBX5 CSGALNACT2 BMS1 EIF3LP2 HNRNPA3P1 PIR60596 GC10M043121
GH10G042367 0.9 ENCODE 16.1 -414.5 -414549 1.4 TBP HDAC1 PKNOX1 ATF1 CBX3 CREB3L1 NFRKB DEAF1 ZBTB40 FOS LOC441666 BMS1 GC10M042434 PIR37552
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BMS1 on UCSC Golden Path with GeneCards custom track

Promoters for BMS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000027163 394 1801 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC

Genomic Location for BMS1 Gene

Chromosome:
10
Start:
42,782,506 bp from pter
End:
42,834,937 bp from pter
Size:
52,432 bases
Orientation:
Plus strand

Genomic View for BMS1 Gene

Genes around BMS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMS1 Gene

Proteins for BMS1 Gene

  • Protein details for BMS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14692-BMS1_HUMAN
    Recommended name:
    Ribosome biogenesis protein BMS1 homolog
    Protein Accession:
    Q14692
    Secondary Accessions:
    • Q5QPT5
    • Q86XJ9

    Protein attributes for BMS1 Gene

    Size:
    1282 amino acids
    Molecular mass:
    145807 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA11504.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for BMS1 Gene

Post-translational modifications for BMS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BMS1 Gene

No data available for DME Specific Peptides for BMS1 Gene

Domains & Families for BMS1 Gene

Protein Domains for BMS1 Gene

Suggested Antigen Peptide Sequences for BMS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q14692

UniProtKB/Swiss-Prot:

BMS1_HUMAN :
  • Belongs to the TRAFAC class translation factor GTPase superfamily. Bms1-like GTPase family. BMS1 subfamily.
Family:
  • Belongs to the TRAFAC class translation factor GTPase superfamily. Bms1-like GTPase family. BMS1 subfamily.
genes like me logo Genes that share domains with BMS1: view

No data available for Gene Families for BMS1 Gene

Function for BMS1 Gene

Molecular function for BMS1 Gene

UniProtKB/Swiss-Prot Function:
May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.

Gene Ontology (GO) - Molecular Function for BMS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22658674
GO:0003924 GTPase activity IBA --
GO:0005524 ATP binding IEA --
GO:0005525 GTP binding IBA --
GO:0034511 U3 snoRNA binding IBA --
genes like me logo Genes that share ontologies with BMS1: view
genes like me logo Genes that share phenotypes with BMS1: view

Human Phenotype Ontology for BMS1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for BMS1 Gene

MGI Knock Outs for BMS1:
  • Bms1 tm1b(EUCOMM)Hmgu

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for BMS1 Gene

Localization for BMS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BMS1 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BMS1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for BMS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005730 nucleolus ISS,IDA --
GO:0030686 90S preribosome IBA --
genes like me logo Genes that share ontologies with BMS1: view

Pathways & Interactions for BMS1 Gene

genes like me logo Genes that share pathways with BMS1: view

Gene Ontology (GO) - Biological Process for BMS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA --
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA --
GO:0006364 rRNA processing TAS --
GO:0042254 ribosome biogenesis IEA --
GO:0042255 ribosome assembly ISS --
genes like me logo Genes that share ontologies with BMS1: view

No data available for SIGNOR curated interactions for BMS1 Gene

Drugs & Compounds for BMS1 Gene

No Compound Related Data Available

Transcripts for BMS1 Gene

mRNA/cDNA for BMS1 Gene

Unigene Clusters for BMS1 Gene

BMS1 homolog, ribosome assembly protein (yeast):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMS1 Gene

No ASD Table

Relevant External Links for BMS1 Gene

GeneLoc Exon Structure for
BMS1
ECgene alternative splicing isoforms for
BMS1

Expression for BMS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BMS1 Gene

Protein differential expression in normal tissues from HIPED for BMS1 Gene

This gene is overexpressed in Plasma (18.8), Adrenal (13.6), and Peripheral blood mononuclear cells (13.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for BMS1 Gene



Protein tissue co-expression partners for BMS1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of BMS1 Gene:

BMS1

SOURCE GeneReport for Unigene cluster for BMS1 Gene:

Hs.10848

Evidence on tissue expression from TISSUES for BMS1 Gene

  • Bone marrow(4.3)
  • Liver(4.3)
  • Skin(4.2)
  • Nervous system(3.7)
  • Muscle(2.5)

Phenotype-based relationships between genes and organs from Gene ORGANizer for BMS1 Gene

Germ Layers:
  • ectoderm
  • mesoderm
Systems:
  • cardiovascular
  • immune
  • integumentary
  • nervous
  • skeleton
Organs:
Head and neck:
  • head
  • scalp
  • skull
General:
  • blood
  • blood vessel
  • hair
  • skin
  • spinal cord
genes like me logo Genes that share expression patterns with BMS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BMS1 Gene

Orthologs for BMS1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for BMS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BMS1 34 35
  • 99.45 (n)
dog
(Canis familiaris)
Mammalia BMS1 34 35
  • 89.65 (n)
cow
(Bos Taurus)
Mammalia BMS1 34 35
  • 88.69 (n)
rat
(Rattus norvegicus)
Mammalia Bms1 34
  • 83.6 (n)
mouse
(Mus musculus)
Mammalia Bms1 34 16 35
  • 83.33 (n)
oppossum
(Monodelphis domestica)
Mammalia BMS1 35
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 76 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves BMS1 34 35
  • 71.83 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 87 (a)
OneToMany
-- 35
  • 70 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia bms1 34
  • 67.63 (n)
zebrafish
(Danio rerio)
Actinopterygii bms1l 34 35
  • 64.33 (n)
Dr.17421 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7464 34
fruit fly
(Drosophila melanogaster)
Insecta CG7728 34 35
  • 56.55 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005871 34
  • 54.14 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_Y61A9LA.10 34
  • 55.36 (n)
Y61A9LA.10 35
  • 47 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes BMS1 34 35 37
  • 54.43 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL113C 34
  • 53.56 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B02068g 34
  • 52.48 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G06720 34
  • 56.21 (n)
rice
(Oryza sativa)
Liliopsida Os03g0333100 34
  • 56.73 (n)
Os.19112 34
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes bms1 34
  • 52.31 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU04348 34
  • 52.27 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1075 35
  • 45 (a)
OneToOne
Species where no ortholog for BMS1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BMS1 Gene

ENSEMBL:
Gene Tree for BMS1 (if available)
TreeFam:
Gene Tree for BMS1 (if available)

Paralogs for BMS1 Gene

No data available for Paralogs for BMS1 Gene

Variants for BMS1 Gene

Sequence variations from dbSNP and Humsavar for BMS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs587777706 Pathogenic, Aplasia cutis congenita, non-syndromic (ACC) [MIM:107600] 42,820,527(+) ACATC(A/G)CTGGT nc-transcript-variant, downstream-variant-500B, reference, missense
rs1000004809 -- 42,826,007(+) TTTTC(A/T)GCATC intron-variant
rs1000019535 -- 42,803,473(+) ATATA(A/G)TTTTT intron-variant
rs1000134116 -- 42,807,039(+) TATGT(C/G)TGTGT intron-variant
rs1000241719 -- 42,800,948(+) GTTAT(C/T)CCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BMS1 Gene

Variant ID Type Subtype PubMed ID
esv2759746 CNV loss 17122850
esv29464 CNV gain 19812545
esv32721 CNV loss 17666407
esv34929 CNV loss 17911159
esv3623028 CNV loss 21293372
esv3623029 CNV loss 21293372
nsv1042764 CNV gain 25217958
nsv1047838 CNV gain 25217958
nsv550672 CNV gain 21841781
nsv8627 CNV gain+loss 18304495
nsv947889 CNV duplication 23825009
nsv947891 CNV duplication 23825009
nsv948330 CNV duplication 23825009

Variation tolerance for BMS1 Gene

Residual Variation Intolerance Score: 93% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.73; 86.60% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BMS1 Gene

Human Gene Mutation Database (HGMD)
BMS1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BMS1 Gene

Disorders for BMS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for BMS1 Gene - From: OMIM, ClinVar, Orphanet, Swiss-Prot, and GeneCards

Disorder Aliases PubMed IDs
aplasia cutis congenita, nonsyndromic
  • aplasia cutis congenita
aplasia cutis congenita
  • aplasia cutis congenita nonsyndromic
- elite association - COSMIC cancer census association via MalaCards
Search BMS1 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

BMS1_HUMAN
  • Aplasia cutis congenita, non-syndromic (ACC) [MIM:107600]: A disorder characterized by congenital absence of a portion of skin in a localized or widespread area of the body. The lesions are most commonly localized on the scalp, however aplasia cutis congenita can affect any part of the body. {ECO:0000269 PubMed:23785305}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for BMS1

Genetic Association Database (GAD)
BMS1
Human Genome Epidemiology (HuGE) Navigator
BMS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMS1
genes like me logo Genes that share disorders with BMS1: view

No data available for Genatlas for BMS1 Gene

Publications for BMS1 Gene

  1. BMS1 is mutated in aplasia cutis congenita. (PMID: 23785305) Marneros A.G. (PLoS Genet. 2013) 2 3 4 64
  2. Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy. (PMID: 21685912) HAPglinger G.U. … Schellenberg G.D. (Nat. Genet. 2011) 3 46 64
  3. Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PMID: 19204726) Chapuis J. … Lambert J.C. (Mol. Psychiatry 2009) 3 46 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms. (PMID: 11779832) Crosier M. … Jackson M.S. (Genome Res. 2002) 2 3 64

Products for BMS1 Gene

Sources for BMS1 Gene

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