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Aliases for BMP5 Gene

Aliases for BMP5 Gene

  • Bone Morphogenetic Protein 5 2 3 5
  • BMP-5 4

External Ids for BMP5 Gene

Previous GeneCards Identifiers for BMP5 Gene

  • GC06M055622
  • GC06M055667
  • GC06M055455

Summaries for BMP5 Gene

Entrez Gene Summary for BMP5 Gene

  • This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate each subunit of the disulfide-linked homodimer, which plays a role in bone and cartilage development. Polymorphisms in this gene may be associated with osteoarthritis in human patients. This gene is differentially regulated in multiple human cancers. This gene encodes distinct protein isoforms that may be similarly proteolytically processed. [provided by RefSeq, Jul 2016]

GeneCards Summary for BMP5 Gene

BMP5 (Bone Morphogenetic Protein 5) is a Protein Coding gene. Diseases associated with BMP5 include Keshan Disease and Epileptic Encephalopathy, Childhood-Onset. Among its related pathways are Activation of cAMP-Dependent PKA and GPCR Pathway. GO annotations related to this gene include cytokine activity and transforming growth factor beta receptor binding. An important paralog of this gene is BMP7.

UniProtKB/Swiss-Prot for BMP5 Gene

  • Induces cartilage and bone formation.

Gene Wiki entry for BMP5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BMP5 Gene

Genomics for BMP5 Gene

Regulatory Elements for BMP5 Gene

Enhancers for BMP5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F055755 0.8 ENCODE 4.8 +117.9 117902 4.3 TBP JUN CEBPG BRCA1 RAD21 RFX5 GATA3 CTBP1 ZNF157 RCOR1 BMP5 GC06P055778 GC06P055722
GH06F055867 1.1 Ensembl ENCODE 0.4 +6.5 6476 2.5 TBP PKNOX1 TBL1XR1 BMI1 CBX5 ETV6 CREM ZNF263 CBFB CEBPB BMP5 PIR53614
GH06F055874 0.5 ENCODE 0.8 +0.5 487 2.1 TBP TAF1 ZNF652 TCF7L2 BMP5 PIR53614
GH06F055865 0.7 ENCODE 0.4 +9.0 9012 1.8 PKNOX1 JUN CEBPB DPF2 EP300 JUND FOSL2 FOS FOXP2 TCF7L2 BMP5 PIR53614
GH06F055872 0.2 Ensembl 0.8 +2.5 2493 1.0 BMP5 PIR53614
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BMP5 on UCSC Golden Path with GeneCards custom track

Promoters for BMP5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001219019 692 1399 TBP TAF1 ZNF652 TCF7L2

Genomic Location for BMP5 Gene

Chromosome:
6
Start:
55,753,645 bp from pter
End:
55,875,593 bp from pter
Size:
121,949 bases
Orientation:
Minus strand

Genomic View for BMP5 Gene

Genes around BMP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BMP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BMP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BMP5 Gene

Proteins for BMP5 Gene

  • Protein details for BMP5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P22003-BMP5_HUMAN
    Recommended name:
    Bone morphogenetic protein 5
    Protein Accession:
    P22003
    Secondary Accessions:
    • B4E0Y4
    • Q9H547
    • Q9NTM5

    Protein attributes for BMP5 Gene

    Size:
    454 amino acids
    Molecular mass:
    51737 Da
    Quaternary structure:
    • Homodimer; disulfide-linked.

    Alternative splice isoforms for BMP5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BMP5 Gene

Post-translational modifications for BMP5 Gene

  • Glycosylation at Asn 211, Asn 327, Asn 345, and Asn 395
  • Modification sites at PhosphoSitePlus

Other Protein References for BMP5 Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for BMP5

No data available for DME Specific Peptides for BMP5 Gene

Domains & Families for BMP5 Gene

Suggested Antigen Peptide Sequences for BMP5 Gene

Graphical View of Domain Structure for InterPro Entry

P22003

UniProtKB/Swiss-Prot:

BMP5_HUMAN :
  • Belongs to the TGF-beta family.
Family:
  • Belongs to the TGF-beta family.
genes like me logo Genes that share domains with BMP5: view

Function for BMP5 Gene

Molecular function for BMP5 Gene

GENATLAS Biochemistry:
bone morphogenetic protein 5 (Drosophila decapentaplegic-Vg-related,DVR family;TGFB superfamily),mouse short-ear (se) homolog
UniProtKB/Swiss-Prot Function:
Induces cartilage and bone formation.

Gene Ontology (GO) - Molecular Function for BMP5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity IBA --
GO:0005160 transforming growth factor beta receptor binding IBA --
GO:0008083 growth factor activity IEA --
GO:0070700 BMP receptor binding IDA 7811286
genes like me logo Genes that share ontologies with BMP5: view
genes like me logo Genes that share phenotypes with BMP5: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BMP5 Gene

Localization for BMP5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BMP5 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BMP5 gene
Compartment Confidence
extracellular 5
plasma membrane 1
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for BMP5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space ISS --
GO:0031982 vesicle ISS --
genes like me logo Genes that share ontologies with BMP5: view

Pathways & Interactions for BMP5 Gene

genes like me logo Genes that share pathways with BMP5: view

Gene Ontology (GO) - Biological Process for BMP5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001501 skeletal system development NAS 2263636
GO:0001503 ossification IEA --
GO:0003272 endocardial cushion formation IEA,ISS --
GO:0003323 type B pancreatic cell development IDA 11865031
GO:0003344 pericardium morphogenesis IEA,ISS --
genes like me logo Genes that share ontologies with BMP5: view

No data available for SIGNOR curated interactions for BMP5 Gene

Drugs & Compounds for BMP5 Gene

(1) Drugs for BMP5 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Escitalopram Approved, Investigational Pharma 0
genes like me logo Genes that share compounds with BMP5: view

Transcripts for BMP5 Gene

mRNA/cDNA for BMP5 Gene

Unigene Clusters for BMP5 Gene

Bone morphogenetic protein 5:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BMP5 Gene

No ASD Table

Relevant External Links for BMP5 Gene

GeneLoc Exon Structure for
BMP5
ECgene alternative splicing isoforms for
BMP5

Expression for BMP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BMP5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BMP5 Gene

This gene is overexpressed in Bladder (x8.3), Lung (x7.4), and Prostate (x4.1).

Protein differential expression in normal tissues from HIPED for BMP5 Gene

This gene is overexpressed in Heart (68.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for BMP5 Gene



Protein tissue co-expression partners for BMP5 Gene

NURSA nuclear receptor signaling pathways regulating expression of BMP5 Gene:

BMP5

SOURCE GeneReport for Unigene cluster for BMP5 Gene:

Hs.296648

mRNA Expression by UniProt/SwissProt for BMP5 Gene:

P22003-BMP5_HUMAN
Tissue specificity: Expressed in the lung and liver.
genes like me logo Genes that share expression patterns with BMP5: view

Primer Products

Orthologs for BMP5 Gene

This gene was present in the common ancestor of animals.

Orthologs for BMP5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BMP5 34 35
  • 99.85 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia BMP5 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BMP5 34 35
  • 94.57 (n)
oppossum
(Monodelphis domestica)
Mammalia BMP5 35
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BMP5 34 35
  • 90.9 (n)
mouse
(Mus musculus)
Mammalia Bmp5 34 16 35
  • 89.43 (n)
rat
(Rattus norvegicus)
Mammalia Bmp5 34
  • 89.28 (n)
chicken
(Gallus gallus)
Aves BMP5 34 35
  • 83.55 (n)
lizard
(Anolis carolinensis)
Reptilia BMP5 35
  • 89 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bmp5 34
  • 75.52 (n)
zebrafish
(Danio rerio)
Actinopterygii bmp5 34 35
  • 70.29 (n)
zgc64230 34
fruit fly
(Drosophila melanogaster)
Insecta gbb 36
  • 34 (a)
scw 36
  • 28 (a)
worm
(Caenorhabditis elegans)
Secernentea dbl-1 36
  • 34 (a)
Species where no ortholog for BMP5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BMP5 Gene

ENSEMBL:
Gene Tree for BMP5 (if available)
TreeFam:
Gene Tree for BMP5 (if available)

Paralogs for BMP5 Gene

Paralogs for BMP5 Gene

(7) SIMAP similar genes for BMP5 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with BMP5: view

Variants for BMP5 Gene

Sequence variations from dbSNP and Humsavar for BMP5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10080613 -- 55,821,821(+) AAAAT(A/G)CCTGC intron-variant
rs10080872 -- 55,825,443(+) GGACT(A/G)ATAGT intron-variant
rs1020422 -- 55,774,821(+) tggag(A/G)tctgc intron-variant
rs10214588 -- 55,820,637(+) ggtct(C/T)gaaat intron-variant
rs10223613 -- 55,793,129(+) TTTGA(A/G)TTTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BMP5 Gene

Variant ID Type Subtype PubMed ID
nsv603164 CNV loss 21841781
nsv1034037 CNV gain 25217958
nsv1032684 CNV loss 25217958
esv3609079 CNV loss 21293372
esv3609078 CNV loss 21293372
esv3571078 CNV loss 25503493
esv2665663 CNV deletion 23128226
dgv5966n100 CNV gain 25217958

Variation tolerance for BMP5 Gene

Residual Variation Intolerance Score: 35.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.76; 47.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BMP5 Gene

Human Gene Mutation Database (HGMD)
BMP5
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BMP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BMP5 Gene

Disorders for BMP5 Gene

MalaCards: The human disease database

(7) MalaCards diseases for BMP5 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
keshan disease
  • caused by deficiency of selenium in the diet
epileptic encephalopathy, childhood-onset
  • childhood onset epileptic encephalopathy
squamous cell papilloma
  • epidermoid papilloma
osteoarthritis
  • arthropathy
nephrosclerosis
  • renal sclerosis
- elite association - COSMIC cancer census association via MalaCards
Search BMP5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for BMP5

Genetic Association Database (GAD)
BMP5
Human Genome Epidemiology (HuGE) Navigator
BMP5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BMP5
genes like me logo Genes that share disorders with BMP5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BMP5 Gene

Publications for BMP5 Gene

  1. Association of a functional microsatellite within intron 1 of the BMP5 gene with susceptibility to osteoarthritis. (PMID: 20021689) Wilkins J.M. … Loughlin J. (BMC Med. Genet. 2009) 3 22 46 64
  2. Bone morphogenetic protein-5 (BMP-5) promotes dendritic growth in cultured sympathetic neurons. (PMID: 11580864) Beck H.N. … Lein P.J. (BMC Neurosci 2001) 2 3 22 64
  3. A bone morphogenetic protein subfamily: chromosomal localization of human genes for BMP5, BMP6, and BMP7. (PMID: 1427904) Hahn G.V. … Kaplan F.S. (Genomics 1992) 2 3 22 64
  4. Identification of transforming growth factor beta family members present in bone-inductive protein purified from bovine bone. (PMID: 2263636) Celeste A.J. … Wozney J.M. (Proc. Natl. Acad. Sci. U.S.A. 1990) 3 4 22 64
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64

Products for BMP5 Gene

Sources for BMP5 Gene

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