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Aliases & Descriptions for BMP4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BMP-2B 3 BMP-4 3 BMP2B 2 , 3 , 5 BMP2B1 2 , 5 DVR4 3 MCOPS6 2 , 5 OFC11 2 , 5 ZYME 2
Descriptions bone morphogenetic protein 2B 2 bone morphogenetic protein 4 2
Search outside databases for aliases for BMP4 genePrevious GC identifers: GC14M051739 GC14M048212 GC14M052406
Summaries for BMP4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for BMP4 : The protein encoded by this gene is a member of the bone morphogenetic protein family which is partof the transforming growth factor-beta superfamily. The superfamily includes large families ofgrowth and differentiation factors. Bone morphogenetic proteins were originally identified by anability of demineralized bone extract to induce endochondral osteogenesis in vivo in anextraskeletal site. This particular family member plays an important role in the onset ofendochondral bone formation in humans, and a reduction in expression has been associated with avariety of bone diseases, including the heritable disorder Fibrodysplasia Ossificans Progressiva.Alternative splicing in the 5' untranslated region of this gene has been described and threevariants are described, all encoding an identical protein. [provided by RefSeq] UniProtKB/Swiss-Prot: BMP4_HUMAN, P12644 Function : Induces cartilage and bone formation. Also act in mesoderm induction, tooth development,limb formation and fracture repair
Gene Wiki entry for BMP4 (Bone_morphogenetic_protein_4)
Genomic Location for BMP4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the BMP4 gene Entrez Gene cytogenetic band: 14q22-q23 Ensembl cytogenetic band: 14q22.2 HGNC cytogenetic band: 14q22-q23 BMP4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M053486:
(about GC identifiers )
Start:
53,486,204 bp from pter
End:
53,493,304 bp from pter
Size:
7,101 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for BMP4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: BMP4_HUMAN, P12644 (See
protein sequence )Recommended Name: Bone morphogenetic protein 4 precursor Size : 408 amino acids; 46555 Da
Subunit : Homodimer; disulfide-linked (By similarity). Interacts with GREM2 (By similarity) andSOSTDC1. Part of a complex consisting of TWSG1 and CHRD (By similarity)
Subcellular location : Secreted, extracellular space, extracellular matrix
Secondary accessions : Q9UM80
REFSEQ proteins (3 alternative transcripts):
NP_001193.2 NP_570911.2 NP_570912.2 ENSEMBL proteins: ENSP00000245451 ENSP00000378964 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0005578 proteinaceous extracellular matrix
IEA -- GO:0005615 extracellular space
IEA --
About this table Antibodies for BMP4: Assays for BMP4:
Protein
Domains/ Families for BMP4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P12644 ProtoNet protein and cluster: P12644
2 Blocks protein families : IPB001111 Transforming growth factor beta (TGFb) IPB001839 Transforming growth factor beta (TGFb) UniProtKB/Swiss-Prot: BMP4_HUMAN, P12644 Similarity : Belongs to the TGF-beta family
Gene Function for BMP4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_130850 Applied Biosystems Silencer ® siRNAs for BMP4 Sigma-Aldrich siRNA and siRNA Panels for BMP4 Sigma-Aldrich shRNA Panels and shRNA for BMP4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001202                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001202                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001202  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001202 UniProtKB/Swiss-Prot: BMP4_HUMAN, P12644 Function : Induces cartilage and bone formation. Also act in mesoderm induction, tooth development,limb formation and fracture repair
Genatlas biochemistry entry for BMP4 :bone morphogenetic protein 4 (Drosophila decapentaplegic-Vg-related,DVR family;TGFBsuperfamily),BMP4 expression under MSX2 control,inducing ventralizing signals inhibited bynoggin,also inducing apoptosis and chondrogenesis in the chick limb bud,inhibited byFGF4,regulating myogenesis through dosage-dependent PAX3 expression in pre-myogenic cells
15/24 MGI mutant phenotypes (inferred from 11 alleles ) (MGI details for Bmp4) (see all 24
):5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for BMP4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/10 Sigma-Aldrich "Your Favorite Gene" Pathways for BMP4 (Your Favorite Gene powered by Ingenuity) (see all 10
) Gene Network CentralTM Interacting Genes and Proteins Network for BMP4 5/162 Interacting proteins for BMP4 (ENSP00000245451 3 P12644 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 162
)About this table 5/29 Gene Ontology (GO) biological process terms (links to tree view) (see all 29
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001525 angiogenesis
IEA -- GO:0001658 ureteric bud branching
IEA -- GO:0007275 multicellular organismal development
IEA -- GO:0007281 germ cell development
IEA -- GO:0007500 mesodermal cell fate determination
IEA --
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Drugs & Compounds for BMP4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for BMP4 10/25 Novoseek chemical compound relationships for BMP4 gene (see all 25
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
cyclopamine
52.50
1
11487541 (1)
tgf beta1
41.75
11
18172096 (4), 17617449 (1), 18434375 (1), 9739114 (1) (see all 5 )
threonine
31.04
5
7673243 (1), 9577408 (1), 15621726 (1), 7811286 (1) (see all 5 )
ribonucleic acid
15.20
5
12616078 (1), 12672843 (1), 9577408 (1)
heparan sulfate
9.39
11
18385288 (2), 17055473 (2), 17944754 (1)
matrigel
1.53
2
18535293 (1), 17526776 (1)
nitric oxide
0.44
5
15060574 (4)
forskolin
0.00
7
10999829 (4), 17272757 (2)
deoxyribonucleic acid
0.00
1
9577410 (1)
bromodeoxyuridine
0.00
2
16458882 (1), 8682183 (1)
About this table
Transcripts for BMP4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_130850 Sigma-Aldrich siRNA and siRNA Panels for BMP4 Sigma-Aldrich shRNA Panels and shRNA for BMP4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001202 NM_130850 NM_130851
REFSEQ mRNAs for BMP4 gene (3 alternative transcripts): NM_001202.3 NM_130850.2 NM_130851.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001202 NM_130850 NM_130851
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001202                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001202                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001202  
Additional cDNA sequence: BC020546.2 BX161385.1 BX161438.1 CR595138.1 CR603423.1 CR615807.1 M22490.1
11 DOTS entries : DT.444673 DT.91744114 DT.100804406 DT.100787271 DT.91744115 DT.100696704 DT.75188866 DT.86851128 DT.95275953 DT.95303693 DT.100787269
24/158 AceView cDNA sequences (see all 158
):BQ573792 BE512742 BM791751 BE877424 BU190376 BU628523 BM698963 BM998225 BE304524 BE867398 CR615807 CA428190 BM557669 BX161438 BX161385 BM687933 CR595138 CB159290 BM561296 CR603423 M22490 T54134 BQ641785 BG328313
highest scoring ESTs for BMP4 :M22490 AA584413 BC020546 BE512742 BE617281 BE740078 BE869477 BF982469 BF983498 BF983505
Unigene Cluster for BMP4: Bone morphogenetic protein 4 Hs.68879 [show with all ESTs ] Unigene Representative Sequence: NM_001202 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for BMP4 (see all 7
) ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b · 5c · 5d · 5e · 5f SP1 :         -   -     -   -                     SP2 :         -   -     -                       SP3 :           -     -                       SP4 :   -   -   -   -   -     -                       SP5 :               -   -                    
About this scheme ECgene alternative splicing isoforms for BMP4 2 Ensembl transcripts including schematic representations : ENST00000245451
ENST00000395600
Expression for BMP4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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BMP4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for BMP4 1 / 2 / 3
4 probe-sets matching BMP4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGTACCTGGSOURCE GeneReport for Unigene cluster: Hs.68879 Expression variation in blood from EXPOLDB for BMP4
UniProtKB/Swiss-Prot: BMP4_HUMAN, P12644 Tissue specificity : Expressed in the lung and lower levels seen in the kidney. Present also innormal and neoplastic prostate tissues, and prostate cancer cell lines
Orthologs for BMP4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for BMP4 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for BMP4 ENSEMBL Gene Tree for BMP4 Paralogs for BMP4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for BMP4 gene BMP10 2 GDF2 2 BMP2 2
SNPs/Variants for BMP4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for BMP4 (up to first 250kb)
Disorders & Mutations for BMP4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 112262 disorders : 607932 600625 UniProtKB/Swiss-Prot: BMP4_HUMAN, P12644
Defects in BMP4 are the cause of microphthalmia syndromic type 6 (MCOPS6) [MIM:607932];also known as microphthalmia and pituitary anomalies or microphthalmia with brain and digitdevelopmental anomalies. Microphthalmia is a clinically heterogeneous disorder of eye formation,ranging from small size of a single eye to complete bilateral absence of ocular tissues(anophthalmia). In many cases, microphthalmia/anophthalmia occurs in association with syndromesthat include non-ocular abnormalities. MCOPS6 is characterized by microphthalmia/anophthalmiaassociated with facial, genital, skeletal, neurologic and endocrine anomalies
10/54 Novoseek disease relationships for BMP4 gene (see all 54
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
fibrodysplasia ossificans progressiva
85.50
40
12672843 (6), 8678932 (4), 9577410 (3), 12579020 (3) (see all 17 )
ossification heterotopic
63.09
8
14711949 (2), 17345627 (2), 11521229 (1)
carcinoma embryonal
47.56
11
8903360 (2), 17941089 (1), 11478839 (1), 10578180 (1) (see all 8 )
polydactyly, postaxial
39.97
3
15581864 (1), 10964473 (1)
genetic disorder
35.17
6
17345627 (1), 11521229 (1), 10457277 (1)
congenital malformation
33.90
3
11722794 (2), 16414041 (1)
cleft palate
30.54
3
12163415 (2), 18771417 (1)
osteosarcoma
30.19
4
7579580 (1), 11986346 (1), 12881039 (1), 9874511 (1)
pilomatricoma
29.96
2
15701082 (1)
polydactyly
26.20
5
15581864 (1), 18925664 (1), 18252212 (1)
About this table Human Gene Mutation Database : BMP4 Genetic Association Database: BMP4 Human Genome Epidemiology Navigator: BMP4 (11 documents)
Medical News for BMP4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for BMP4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/605 PubMed articles for BMP4 gene (see all 605
): Cloning and sequence of bone morphogenetic protein 4 (BMP-4) from a human placental cDNA library. (PubMed id 7579580) 1, 2, 3, 4 Oida S....Sasaki S. (1995) Evaluation of BMP4 and its specific inhibitor NOG as candidates in human neural tube defects (NTDs). (PubMed id 12404109) 3, 4, 6 Felder B....Koch M.C. (2002) Mutations in BMP4 cause eye, brain, and digit developmental anomalies: overlap between the BMP4 and hedgehog signaling pathways. (PubMed id 18252212) 1, 3, 4 Bakrania P.... Ragge N.K. (2008) The human bone morphogenetic protein 4 (BMP-4) gene: molecular structure and transcriptional regulation. (PubMed id 9701626) 1, 3, 4 Shore E.M.... Kaplan F.S. (1998) SIX2 and BMP4 mutations associate with anomalous kidney development. (PubMed id 18305125) 3, 4 Weber S.... Burdine R.D. (2008) USAG-1: a bone morphogenetic protein antagonist abundantly expressed in the kidney. (PubMed id 15020244) 3, 4 Yanagita M.... Sakurai T. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Fine mapping of the human bone morphogenetic protein-4 gene (BMP4) to chromosome 14q22-q23 by in situ hybridization. (PubMed id 7558046) 2, 3 van den Wijngaard A....Olijve W. (1995) Novel regulators of bone formation: molecular clones and activities. (PubMed id 3201241) 3, 4 Wozney J.M.... Wang E.A. (1988) Repulsive guidance molecule RGMa alters utilization of bone morphogenetic protein (BMP) type II receptors by BMP2 and BMP4. (PubMed id 17472960) 1, 3 Xia Y....Lin H.Y. (2007)
Search for BMP4
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Genome Databases showing BMP4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing BMP4
(According to HUGE )
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Specialized Databases showing BMP4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Licensable Technologies for BMP4 gene: Services for BMP4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for BMP4:
Search Tocris compounds for BMP4
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Aliases for BMP4
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Expression for BMP4
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Location for BMP4
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Orthologs for BMP4
Paralogs for BMP4
Pathways/Interactions for BMP4
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Publications for BMP4
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009