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Aliases & Descriptions for BMP2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BMP-2 3 | | BMP-2A 3 | | BMP2A 2, 3, 5 | | OTTHUMP00000030228 2 |
| | | Descriptions |
|---|
| bone morphogenetic protein 2 2 |
|
| | Search outside databases for aliases for BMP2 genePrevious GC identifers: GC20P006737 GC20P006744 |
Summaries for BMP2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for BMP2: The protein encoded by this gene belongs to the transforming growth factor-beta (TGFB) superfamily. The encoded protein acts as a disulfide-linked homodimer and induces bone and cartilage formation. [provided by RefSeq] UniProtKB/Swiss-Prot: BMP2_HUMAN, P12643Function: Induces cartilage and bone formationGene Wiki entry for BMP2 (Bone_morphogenetic_protein_2) |
Genomic Location for BMP2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the BMP2 gene 
Entrez Gene cytogenetic band: 20p12 Ensembl cytogenetic band: 20p12.3 HGNC cytogenetic band: 20p12BMP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20P006696:
(about GC identifiers)
Start:
|
6,696,745 bp from pter |
End:
|
6,708,910 bp from pter |
Size:
|
12,166 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000020.9 NT_011387.8
| Proteins for BMP2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: BMP2_HUMAN, P12643 (See
protein sequence)Recommended Name: Bone morphogenetic protein 2 precursor Size: 396 amino acids; 44702 Da
Subunit: Homodimer; disulfide-linked. Interacts with GREM2 (By similarity) and SOSTDC1
Subcellular location: Secreted
PDB structures from and Proteopedia :1ES7 (3D)
 1REU (3D)
 1REW (3D)
 2GOO (3D)
 2H62 (3D)
 2H64 (3D)
 2QJ9 (3D)
 2QJA (3D)
 2QJB (3D)
 3BK3 (3D)
 3BMP (3D)
 REFSEQ proteins: NP_001191.1
ENSEMBL proteins: ENSP00000368104
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
IEA | -- | | GO:0005615 | extracellular space |
IEA | -- | About this table
Antibodies for BMP2: Assays for BMP2: | Protein
Domains/ Families for BMP2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P12643
ProtoNet protein and cluster: P12643 2 Blocks protein families: IPB001111 Transforming growth factor beta (TGFb) IPB001839 Transforming growth factor beta (TGFb)
UniProtKB/Swiss-Prot: BMP2_HUMAN, P12643Similarity: Belongs to the TGF-beta family | Gene Function for BMP2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001200
Applied Biosystems Silencer® siRNAs for BMP2
Sigma-Aldrich siRNA and siRNA Panels for BMP2  Sigma-Aldrich shRNA for BMP2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001200                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001200                                  untagged cDNA clone in CMV expression vector: NM_001200 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001200
UniProtKB/Swiss-Prot: BMP2_HUMAN, P12643Function: Induces cartilage and bone formationGenatlas biochemistry entry for BMP2:bone morphogenetic protein 2 (Drosophila decapentaplegic-Vg-related,DVR family;TGFB superfamily),regulating myogenesis through dosage-dependent PAX3 expression in pre-myogenic cells,expressed in mesoderm under SHM control throuhg the mediaton of SOX9,involved in bone formation13 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Bmp2):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for BMP2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 5/10 Sigma-Aldrich "Your Favorite Gene" Pathways for BMP2 (Your Favorite Gene powered by Ingenuity) (see all 10
) 
Gene Network CentralTM Interacting Genes and Proteins Network for BMP2 
5/171 Interacting proteins for BMP2 (ENSP000003681043) via UniProtKB, MINT, and/or STRING (see all 171
)About this table
5/21 Gene Ontology (GO) biological process terms (links to tree view) (see all 21
): About this table
|
Drugs & Compounds for BMP2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for BMP2 10/41 Novoseek chemical compound relationships for BMP2 gene (see all 41
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| hydroxyapatite |
67.93 |
102 |
10853181 (4), 17189469 (3), 17617550 (3), 10512384 (2) (see all 46) |
| alizarin |
65.16 |
8 |
17236579 (1), 17300917 (1), 19146860 (1), 16845965 (1) (see all 7) |
| atelocollagen |
64.70 |
6 |
9565272 (2), 11168221 (1), 18404714 (1), 11502864 (1) |
| alizarin red s |
60.95 |
1 |
15105665 (1) |
| poly-p-dioxanone |
59.33 |
3 |
16564087 (2), 16479565 (1) |
| titanium |
57.43 |
47 |
17618492 (4), 19216269 (3), 16683108 (2), 18651113 (2) (see all 23) |
| poly(dl-lactide-co-glycolide) |
56.57 |
12 |
9552326 (2), 10357135 (1), 9584385 (1), 10397955 (1) (see all 7) |
| fibroin |
46.32 |
10 |
15478212 (3), 16458961 (2), 16637042 (1), 18387349 (1) |
| procollagen |
41.52 |
7 |
10085302 (2), 12925611 (1), 9069168 (1), 12440928 (1) (see all 5) |
| tgf beta1 |
40.17 |
11 |
18434375 (3), 8616889 (1), 15721136 (1), 9683824 (1) (see all 8) |
About this table
|
Transcripts for BMP2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001200
Sigma-Aldrich siRNA and siRNA Panels for BMP2  Sigma-Aldrich shRNA for BMP2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001200 REFSEQ mRNAs for BMP2 gene: NM_001200.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001200               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001200                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001200                                  untagged cDNA clone in CMV expression vector: NM_001200  Additional cDNA sequence: BC069214.1 CR618407.1 M22489.1 2 DOTS entries: DT.113271 DT.100813580 24/84 AceView cDNA sequences (see all 84
):AA181547 BM670141 BC069214 BQ003843 NM_001200 BQ890465 CB163046 BX101090 BM993226 AA630607 AA583044 BU625617 BM670241 M22489 AA489383 CB132019 AA010702 BF437206 CR618407 BM683313 AI379163 AI084926 AA488371 BQ186599
highest scoring ESTs for BMP2:M22489 AA029824 AA181547 AA182439 AA190917 AA191431 AA436230 AA488371 AA488503 AA489442 Unigene Cluster for BMP2: Bone morphogenetic protein 2 Hs.73853 [show with all ESTs]Unigene Representative Sequence: NM_001200
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000378827
|
Expression for BMP2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| BMP2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for BMP2
1 / 2 / 3 7 probe-sets matching BMP2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTTGTGGAGG
SOURCE GeneReport for Unigene cluster: Hs.73853
Expression variation in blood from EXPOLDB for BMP2 UniProtKB/Swiss-Prot: BMP2_HUMAN, P12643Tissue specificity: Particularly abundant in lung, spleen and colon and in low but significant levels in heart, brain, placenta, liver, skeletal muscle, kidney, pancreas, prostate, ovary and small intestine |
Orthologs for BMP2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for BMP2 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for BMP2
ENSEMBL Gene Tree for BMP2 | Paralogs for BMP2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for BMP2 gene
- BMP102 BMP42 GDF22
|
SNPs/Variants for BMP2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for BMP2 (up to first 250kb)
|
Disorders & Mutations for BMP2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 112261 disorders: 235200 10/89 Novoseek disease relationships for BMP2 gene (see all 89
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| calcification |
63.93 |
73 |
18179800 (5), 14587031 (4), 16037577 (3), 19028757 (3) (see all 36) |
| arthrodesis |
63.46 |
25 |
19411467 (3), 15966907 (2), 11840099 (2), 8843392 (1) (see all 19) |
| ossification heterotopic |
52.86 |
6 |
16903944 (2), 19043134 (1), 11600747 (1), 16619272 (1) (see all 5) |
| osteosarcoma |
52.75 |
30 |
16470222 (3), 10491221 (2), 17022972 (2), 10814523 (2) (see all 22) |
| degenerative disc disease |
49.96 |
2 |
17669279 (2) |
| osteoporosis |
49.05 |
25 |
16753015 (3), 14691541 (3), 11240412 (1), 16470007 (1) (see all 13) |
| pseudarthrosis |
48.14 |
2 |
19226004 (1) |
| furcation defects |
43.98 |
2 |
15966907 (2) |
| lumbar disc disease |
41.94 |
3 |
19411467 (2), 15198497 (1) |
| fibrodysplasia ossificans progressiva |
36.66 |
1 |
1487246 (1) |
About this table
Human Gene Mutation Database: BMP2 Genetic Association Database: BMP2 Human Genome Epidemiology Navigator: BMP2 (15 documents)
|
Medical News for BMP2(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for BMP2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1060 PubMed articles for BMP2 gene (see all 1060
):- Crystal structure of human bone morphogenetic protein-2 at 2.7 A resolution. (PubMed id 10074410)1, 3, 4 Scheufler C.... Huelsmeyer M. (1999)
- Bovine osteogenic protein is composed of dimers of OP-1 and BMP-2A, two members of the transforming growth factor-beta superfamily. (PubMed id 2376592)1, 2, 3 Sampath T.K....Rueger D.C. (1990)
- USAG-1: a bone morphogenetic protein antagonist abundantly expressed in the kidney. (PubMed id 15020244)3, 4 Yanagita M.... Sakurai T. (2004)
- Sudden infant death syndrome: case-control frequency differences at genes pertinent to early autonomic nervous system embryologic development. (PubMed id 15240857)3, 6 Weese-Mayer D.E....Marazita M.L. (2004)
- The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)3, 4 Deloukas P....Rogers J. (2001)
- Novel regulators of bone formation: molecular clones and activities. (PubMed id 3201241)3, 4 Wozney J.M.... Wang E.A. (1988)
- Alphavbeta integrins play an essential role in BMP-2 induction of osteoblast differentiation. (PubMed id 15647827)1, 3 Lai C.F. and Cheng S.L. (2005)
- Porous silk fibroin 3-D scaffolds for delivery of bone morphogenetic protein-2 in vitro and in vivo. (PubMed id 16637042)1, 3 Karageorgiou V....Kaplan D.L. (2006)
- Matrix GLA protein and BMP-2 regulate osteoinduction in calcifying vascular cells. (PubMed id 14587031)1, 3 Zebboudj A.F....Bostrom K. (2003)
- The crystal structure of the BMP-2:BMPR-IA complex and the generation of BMP-2 antagonists. (PubMed id 11263668)1, 3 Nickel J....Sebald W. (2001)
|
Search for BMP2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing BMP2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing BMP2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BMP2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for BMP2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for BMP2:

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Incremental update: 13 Oct 2009
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