BMI1 Gene
protein-coding GIFtS : 63
GC10P022650
BMI1 polycomb ring finger oncogene (Previous names: polycomb group ring finger 4, B lymphoma Mo-MLV insertion region 1 homolog (mouse) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: PCGF4 )
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Aliases & Descriptions for BMI1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases MGC12685 2 PCGF4 2 , 3 RNF51 1 , 2 , 3 flvi-2/bmi-1 2
Descriptions B lymphoma Mo-MLV insertion region 1 homolog 2 B lymphoma Mo-MLV insertion region 1 homolog (mouse) 1 BMI1 polycomb ring finger oncogene 2 Polycomb group RING finger protein 4 3 RING finger protein 51 2 , 3 murine leukemia viral (bmi-1) oncogene homolog 2 oncogene BMI-1 2 polycomb group protein Bmi1 2 polycomb group ring finger 4 1 , 2
Search outside databases for aliases for BMI1 genePrevious GC identifers: GC10U990006 GC10P022326 GC10P022760 GC10P022614
Summaries for BMI1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: BMI1_HUMAN, P35226 Function : Component of the Polycomb group (PcG) multiprotein PRC1 complex, a complex required tomaintain the transcriptionally repressive state of many genes, including Hox genes, throughoutdevelopment. PcG PRC1 complex acts via chromatin remodeling and modification of histones; itmediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in itsexpressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligaseactivity of RNF2/RING2
Gene Wiki entry for BMI1
Genomic Location for BMI1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the BMI1 gene Entrez Gene cytogenetic band: 10p11.23 Ensembl cytogenetic band: 10p12.31 HGNC cytogenetic band: 10p13 BMI1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P022650:
(about GC identifiers )
Start:
22,650,146 bp from pter
End:
22,660,194 bp from pter
Size:
10,049 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_008705.15 Proteins for BMI1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: BMI1_HUMAN, P35226 (See
protein sequence )Recommended Name: Polycomb complex protein BMI-1 Size : 326 amino acids; 36949 Da
Subunit : Component of chromatin-associated class II polycomb repressive complex 1 (PRC1/hPRC-H) atleast composed of PCGF2/RNF110, BMI1/PCGF4, CBX2/M33, CBX4/PC2, CBX8/PC3, PHC1, PHC2, PHC3, SCMH1,RING1 and RNF2/RING2. Also component of E3 ubiquitin ligase complex or human polycomb repressivecomplex 1-like at least composed of PHC2, BMI1, RING1 and RNF2. Interacts with SPOP. Part of acomplex consisting of BMI1, CUL3 and SPOP. Interacts with E4F1
Subcellular location : Nucleus. Cytoplasm
PDB structures from and Proteopedia : 2H0D (3D)
 
Secondary accessions : Q16030 Q96F37
Post-translational modifications:
May be polyubiquitinated; which does not lead to proteasomal degradation1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_005171.4 ENSEMBL proteins: ENSP00000365851 ENSP00000365881 ENSP00000365909 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: BMI1 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for BMI1: Assays for BMI1:
Protein
Domains/ Families for BMI1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P35226 ProtoNet protein and cluster: P35226
1 Blocks protein family : IPB001841 Zn-finger UniProtKB/Swiss-Prot: BMI1_HUMAN, P35226 Similarity : Contains 1 RING-type zinc finger
Gene Function for BMI1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005180 Applied Biosystems Silencer ® siRNAs for BMI1 Sigma-Aldrich siRNA and siRNA Panels for BMI1 Sigma-Aldrich shRNA for BMI1 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005180                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005180                                  untagged cDNA clone in CMV expression vector: NM_005180  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005180 UniProtKB/Swiss-Prot: BMI1_HUMAN, P35226 Function : Component of the Polycomb group (PcG) multiprotein PRC1 complex, a complex required tomaintain the transcriptionally repressive state of many genes, including Hox genes, throughoutdevelopment. PcG PRC1 complex acts via chromatin remodeling and modification of histones; itmediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in itsexpressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligaseactivity of RNF2/RING2
Genatlas biochemistry entry for BMI1 :bmi-1 protooncogene homolog,activated by Moloney murine leukemia proviral insertion in Emu-myctransgenic mouse,polycomb group (PcG) complexing with SSX1 and SSX2 and associating with chromatin
15/19 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Bmi1) (see all 19
):3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for BMI1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for BMI1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for BMI1 5/52 Interacting proteins for BMI1 (P35226 2 ENSP00000365909 3 ) via UniProtKB, MINT, and/or STRING (see all 52
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
About this table
Drugs & Compounds for BMI1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for BMI1 1 Novoseek chemical compound relationship for BMI1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
zinc
0.00
2
17161394 (1), 9929160 (1)
About this table 2 PharmGKB drug compound relationships for BMI1 gene About this table
Transcripts for BMI1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005180 Sigma-Aldrich siRNA and siRNA Panels for BMI1 Sigma-Aldrich shRNA for BMI1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005180
REFSEQ mRNAs for BMI1 gene: NM_005180.6
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005180
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005180                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005180                                  untagged cDNA clone in CMV expression vector: NM_005180  
Additional cDNA sequence: AK313235.1 BC011652.2 BT019450.1 CR456911.1 L13689.1
12 DOTS entries : DT.450576 DT.100795561 DT.95271334 DT.95271331 DT.40105884 DT.100795564 DT.121280796 DT.100795567 DT.100701596 DT.121280786 DT.91768555 DT.121280792
24/520 AceView cDNA sequences (see all 520
):BM785335 CB163576 CA307265 AI133335 BM850672 AI198218 BU678199 AA018146 AW068881 AA724394 AA297436 BM468405 BP355879 BC022898 BM819196 T29680 BC011652 BP338876 N77409 AA234552 AA322960 BG697708 W32496 AA974180
highest scoring ESTs for BMI1 :L13689 AA037406 AA193571 AA193608 AA281186 AA287795 AA315754 AA322910 AA322960 AA348632
Unigene Cluster for BMI1: BMI1 polycomb ring finger oncogene Hs.380403 [show with all ESTs ] Unigene Representative Sequence: NM_005180 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for BMI1 (see all 10
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b · 12c ^ 13 SP1 :     -   -       -         -   -                       SP2 :             -         -   -                       SP3 :             -     -   -   -   -   -                     SP4 :       -       -                                 SP5 :                     -   -                      
About this scheme ECgene alternative splicing isoforms for BMI1 3 Ensembl transcripts including schematic representations : ENST00000376663
ENST00000376691
ENST00000376719
Expression for BMI1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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BMI1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for BMI1 1 / 2 / 3
4 probe-sets matching BMI1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTGTATGGGSOURCE GeneReport for Unigene cluster: Hs.380403
Orthologs for BMI1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for BMI1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for BMI1 ENSEMBL Gene Tree for BMI1 Paralogs for BMI1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for BMI1 gene PCGF2 2 PCGF6 2 PCGF1 2
SNPs/Variants for BMI1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for BMI1 (up to first 250kb)
Disorders & Mutations for BMI1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 164831 UniProtKB/Swiss-Prot: BMI1_HUMAN, P35226
Cooperates with the MYC oncogene to produce B-lymphomas
10/34 Novoseek disease relationships for BMI1 gene (see all 34
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
lymphoma mantle-cell
64.60
3
11389032 (1), 16528373 (1)
tumors
47.33
89
17545584 (3), 17666329 (3), 16528373 (3), 19215825 (3) (see all 42 )
leukemogenesis
46.21
1
16107895 (1)
leukemia
46.18
16
19379548 (2), 16963837 (2), 17483039 (2), 10727088 (1) (see all 12 )
cancer
43.76
56
16501599 (6), 17452456 (3), 17711569 (2), 18637271 (2) (see all 26 )
hematologic malignancies
42.52
3
16105758 (1), 15254754 (1), 11289106 (1)
myeloid leukemia
41.12
2
16963837 (1), 17483039 (1)
premalignant
33.29
1
15720799 (1)
breast cancer
32.99
45
18228133 (6), 17545584 (6), 17298744 (5), 17711569 (4) (see all 9 )
carcinoma squamous cell
32.03
11
19215825 (3), 19452584 (2), 19021148 (1), 15720799 (1) (see all 5 )
About this table 1 PharmGKB disease relationship for BMI1 gene About this table
Medical News for BMI1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for BMI1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/188 PubMed articles for BMI1 gene (see all 188
): Characterization and chromosomal localization of the human proto- oncogene BMI-1. (PubMed id 8268912) 1, 2, 3, 4 Alkema M.J.... van Lohuizen M. (1993) Identification and characterization of interactions between the vertebrate polycomb-group protein BMI1 and human homologs of polyhomeotic. (PubMed id 9121482) 1, 3, 4 Gunster M.J.... Otte A.P. (1997) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase. (PubMed id 15897469) 3, 4 Hernandez-Munoz I....van Lohuizen M. (2005) Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing. (PubMed id 16359901) 3, 4 Cao R.... Zhang Y. (2005) Role of histone H2A ubiquitination in Polycomb silencing. (PubMed id 15386022) 3, 4 Wang H.... Zhang Y. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The core of the polycomb repressive complex is compositionally and functionally conserved in flies and humans. (PubMed id 12167701) 3, 4 Levine S.S....Kingston R.E. (2002) RING1 is associated with the polycomb group protein complex and acts as a transcriptional repressor. (PubMed id 9199346) 3, 4 Satijn D.P.E.... Otte A.P. (1997) flvi-2, a target of retroviral insertional mutagenesis in feline thymic lymphosarcomas, encodes bmi-1. (PubMed id 8390036) 3, 4 Levy L.S.... Overbaugh J. (1993)
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Genome Databases showing BMI1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing BMI1
(According to HUGE )
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Specialized Databases showing BMI1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for BMI1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for BMI1:
Antibodies & Assays for BMI1  
Recombinant Proteins (Bmi1 ) Antibodies (Bmi1 )
Search Tocris compounds for BMI1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009