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Aliases for BLOC1S5-TXNDC5 Gene

Subcategory (RNA class) for BLOC1S5-TXNDC5 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for BLOC1S5-TXNDC5 Gene

  • BLOC1S5-TXNDC5 Readthrough (NMD Candidate) 2 3
  • MUTED-TXNDC5 Readthrough (Non-Protein Coding) 2 3
  • BLOC1S5-TXNDC5 Readthrough (Non-Protein Coding) 3
  • MUTED-TXNDC5 3

External Ids for BLOC1S5-TXNDC5 Gene

Previous Symbols for BLOC1S5-TXNDC5 Gene

  • MUTED-TXNDC5

Summaries for BLOC1S5-TXNDC5 Gene

Entrez Gene Summary for BLOC1S5-TXNDC5 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring MUTED (muted homolog) and TXNDC5 (thioredoxin domain containing 5) genes on chromosome 6. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for BLOC1S5-TXNDC5 Gene

BLOC1S5-TXNDC5 (BLOC1S5-TXNDC5 Readthrough (NMD Candidate)) is a RNA Gene, and belongs to ncRNA RNA class. An important paralog of this gene is BLOC1S5.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BLOC1S5-TXNDC5 Gene

Genomics for BLOC1S5-TXNDC5 Gene

Genomic Location for BLOC1S5-TXNDC5 Gene

Start:
7,881,250 bp from pter
End:
8,064,414 bp from pter
Size:
183,165 bases
Orientation:
Minus strand

Genomic View for BLOC1S5-TXNDC5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BLOC1S5-TXNDC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BLOC1S5-TXNDC5 Gene

No data available for Regulatory Elements for BLOC1S5-TXNDC5 Gene

Proteins for BLOC1S5-TXNDC5 Gene

  • Protein details for BLOC1S5-TXNDC5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BN57-H3BN57
    Recommended name:
    Protein BLOC1S5-TXNDC5
    Protein Accession:
    H3BN57
    Secondary Accessions:

    Protein attributes for BLOC1S5-TXNDC5 Gene

    Size:
    136 amino acids
    Molecular mass:
    15343 Da
    Quaternary structure:
    No Data Available
  • Protein details for BLOC1S5-TXNDC5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q86UY0-Q86UY0
    Recommended name:
    Protein BLOC1S5-TXNDC5
    Protein Accession:
    Q86UY0
    Secondary Accessions:

    Protein attributes for BLOC1S5-TXNDC5 Gene

    Size:
    360 amino acids
    Molecular mass:
    40369 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BLOC1S5-TXNDC5 Gene

Proteomics data for BLOC1S5-TXNDC5 Gene at MOPED

Protein Expression for BLOC1S5-TXNDC5 Gene

Post-translational modifications for BLOC1S5-TXNDC5 Gene

No Post-translational modifications

Other Protein References for BLOC1S5-TXNDC5 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for BLOC1S5-TXNDC5 Gene

Domains for BLOC1S5-TXNDC5 Gene

Protein Domains for BLOC1S5-TXNDC5 Gene

genes like me logo Genes that share domains with BLOC1S5-TXNDC5: view

No data available for Gene Families and UniProtKB/Swiss-Prot for BLOC1S5-TXNDC5 Gene

Function for BLOC1S5-TXNDC5 Gene

Gene Ontology (GO) - Molecular Function for BLOC1S5-TXNDC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016853 isomerase activity --
genes like me logo Genes that share ontologies with BLOC1S5-TXNDC5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BLOC1S5-TXNDC5 Gene

Localization for BLOC1S5-TXNDC5 Gene

Gene Ontology (GO) - Cellular Components for BLOC1S5-TXNDC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030133 transport vesicle --
GO:0031083 BLOC-1 complex --
genes like me logo Genes that share ontologies with BLOC1S5-TXNDC5: view

Pathways for BLOC1S5-TXNDC5 Gene

SuperPathways for BLOC1S5-TXNDC5 Gene

No Data Available

Interacting Proteins for BLOC1S5-TXNDC5 Gene

Gene Ontology (GO) - Biological Process for BLOC1S5-TXNDC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process --
GO:0045454 cell redox homeostasis --
genes like me logo Genes that share ontologies with BLOC1S5-TXNDC5: view

No data available for Pathways by source for BLOC1S5-TXNDC5 Gene

Transcripts for BLOC1S5-TXNDC5 Gene

mRNA/cDNA for BLOC1S5-TXNDC5 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BLOC1S5-TXNDC5 Gene

No ASD Table

Relevant External Links for BLOC1S5-TXNDC5 Gene

GeneLoc Exon Structure for
BLOC1S5-TXNDC5
ECgene alternative splicing isoforms for
BLOC1S5-TXNDC5

Expression for BLOC1S5-TXNDC5 Gene

mRNA expression in normal human tissues for BLOC1S5-TXNDC5 Gene

Integrated Proteomics: protein expression from for BLOC1S5-TXNDC5 Gene

genes like me logo Genes that share expressions with BLOC1S5-TXNDC5: view

Orthologs for BLOC1S5-TXNDC5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BLOC1S5-TXNDC5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BLOC1S5-TXNDC5 37
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 60 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 53 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Bloc1s5 37
  • 56 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 50 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 50 (a)
OneToMany
chicken
(Gallus gallus)
Aves BLOC1S5 37
  • 40 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 41 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii bloc1s5 37
  • 37 (a)
OneToMany
Species with no ortholog for BLOC1S5-TXNDC5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BLOC1S5-TXNDC5 Gene

ENSEMBL:
Gene Tree for BLOC1S5-TXNDC5 (if available)
TreeFam:
Gene Tree for BLOC1S5-TXNDC5 (if available)

Paralogs for BLOC1S5-TXNDC5 Gene

Paralogs for BLOC1S5-TXNDC5 Gene

Selected SIMAP similar genes for BLOC1S5-TXNDC5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with BLOC1S5-TXNDC5: view

Variants for BLOC1S5-TXNDC5 Gene

Sequence variations from dbSNP and Humsavar for BLOC1S5-TXNDC5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs25572 -- 8,009,576(+) AGAAA(-/TCTG)TCTGG intron-variant
rs149394 -- 7,927,590(+) aagga(G/T)aaata intron-variant
rs149795 -- 7,936,951(+) ACTTA(C/T)TAATA intron-variant
rs155476 -- 7,960,956(+) gcctg(C/T)ggtaa intron-variant
rs155477 -- 7,964,770(+) ttatt(A/T)tttga intron-variant

Relevant External Links for BLOC1S5-TXNDC5 Gene

HapMap Linkage Disequilibrium report
BLOC1S5-TXNDC5

No data available for Structural Variations from Database of Genomic Variants (DGV) for BLOC1S5-TXNDC5 Gene

Disorders for BLOC1S5-TXNDC5 Gene

No disorders were found for BLOC1S5-TXNDC5 Gene.

No data available for UniProtKB/Swiss-Prot for BLOC1S5-TXNDC5 Gene

Publications for BLOC1S5-TXNDC5 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  4. Genetics of coronary artery calcification among African Americans, a meta-analysis. (PMID: 23870195) Wojczynski M.K. … Reilly M.P. (BMC Med. Genet. 2013) 3

Products for BLOC1S5-TXNDC5 Gene

Sources for BLOC1S5-TXNDC5 Gene

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