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Aliases for BLOC1S1-RDH5 Gene

Subcategory (RNA class) for BLOC1S1-RDH5 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for BLOC1S1-RDH5 Gene

  • BLOC1S1-RDH5 Readthrough 3

External Ids for BLOC1S1-RDH5 Gene

Previous GeneCards Identifiers for BLOC1S1-RDH5 Gene

  • GC12U901513
  • GC12P056120
  • GC12P056131

Summaries for BLOC1S1-RDH5 Gene

Entrez Gene Summary for BLOC1S1-RDH5 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring BLOC1S1 (biogenesis of lysosomal organelles complex-1, subunit 1) and RDH5 (retinol dehydrogenase 5, 11-cis/9-cis) genes on chromosome 12. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and it is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for BLOC1S1-RDH5 Gene

BLOC1S1-RDH5 (BLOC1S1-RDH5 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BLOC1S1-RDH5 Gene

Genomics for BLOC1S1-RDH5 Gene

Regulatory Elements for BLOC1S1-RDH5 Gene

Enhancers for BLOC1S1-RDH5 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around BLOC1S1-RDH5 on UCSC Golden Path with GeneCards custom track

Promoters for BLOC1S1-RDH5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BLOC1S1-RDH5 on UCSC Golden Path with GeneCards custom track

Genomic Location for BLOC1S1-RDH5 Gene

Chromosome:
12
Start:
55,716,034 bp from pter
End:
55,724,742 bp from pter
Size:
8,709 bases
Orientation:
Plus strand

Genomic View for BLOC1S1-RDH5 Gene

Genes around BLOC1S1-RDH5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BLOC1S1-RDH5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BLOC1S1-RDH5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BLOC1S1-RDH5 Gene

Proteins for BLOC1S1-RDH5 Gene

Post-translational modifications for BLOC1S1-RDH5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BLOC1S1-RDH5 Gene

Domains & Families for BLOC1S1-RDH5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BLOC1S1-RDH5 Gene

Function for BLOC1S1-RDH5 Gene

Phenotypes for BLOC1S1-RDH5 Gene

genes like me logo Genes that share phenotypes with BLOC1S1-RDH5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BLOC1S1-RDH5 Gene

Localization for BLOC1S1-RDH5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BLOC1S1-RDH5 Gene

Pathways & Interactions for BLOC1S1-RDH5 Gene

SuperPathways for BLOC1S1-RDH5 Gene

No Data Available

Interacting Proteins for BLOC1S1-RDH5 Gene

Gene Ontology (GO) - Biological Process for BLOC1S1-RDH5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BLOC1S1-RDH5 Gene

Drugs & Compounds for BLOC1S1-RDH5 Gene

No Compound Related Data Available

Transcripts for BLOC1S1-RDH5 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for BLOC1S1-RDH5 Gene

No ASD Table

Relevant External Links for BLOC1S1-RDH5 Gene

GeneLoc Exon Structure for
BLOC1S1-RDH5

No data available for mRNA/cDNA for BLOC1S1-RDH5 Gene

Expression for BLOC1S1-RDH5 Gene

mRNA expression in normal human tissues for BLOC1S1-RDH5 Gene

genes like me logo Genes that share expression patterns with BLOC1S1-RDH5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for BLOC1S1-RDH5 Gene

Orthologs for BLOC1S1-RDH5 Gene

No data available for Orthologs and Evolution for BLOC1S1-RDH5 Gene

Paralogs for BLOC1S1-RDH5 Gene

No data available for Paralogs for BLOC1S1-RDH5 Gene

Variants for BLOC1S1-RDH5 Gene

Structural Variations from Database of Genomic Variants (DGV) for BLOC1S1-RDH5 Gene

Variant ID Type Subtype PubMed ID
nsv525231 CNV Loss 19592680
nsv832423 CNV Gain 17160897
nsv469410 CNV Loss 19166990

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for BLOC1S1-RDH5 Gene

Disorders for BLOC1S1-RDH5 Gene

No disorders were found for BLOC1S1-RDH5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BLOC1S1-RDH5 Gene

Publications for BLOC1S1-RDH5 Gene

  1. Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia. (PMID: 23396134) Verhoeven V.J. … Hammond C.J. (Nat. Genet. 2013) 3 67
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for BLOC1S1-RDH5 Gene

Sources for BLOC1S1-RDH5 Gene

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