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Aliases & Descriptions for BLM
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BLAP18 5 | | BS 1, 2 | | C16orf75 5 | | EC 3.6.1.- 3 | | MGC126616 2 | | MGC131618 2 | | MGC131620 2 | | RECQ2 1, 2, 3 | | RECQL2 2 | | RECQL3 1, 2, 3 | | RMI2 5 |
| | | Descriptions |
|---|
| Bloom syndrome 1 | | Bloom syndrome protein 2 | | Bloom syndrome, RecQ helicase-like 2 | | DNA helicase, RecQ-like type 2 3 | | RecQ protein-like 3 3 |
|
| | Search outside databases for aliases for BLM genePrevious GC identifers: GC15P087894 GC15P085101 GC15P088847 GC15P088990 |
Summaries for BLM(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for BLM: The Bloom syndrome gene product is related to the RecQ subset of DExH box-containing DNA helicases and has both DNA-stimulated ATPase and ATP-dependent DNA helicase activities. Mutations causing Bloom syndrome delete or alter helicase motifs and may disable the 3'-5' helicase activity. The normal protein may act to suppress inappropriate recombination. [provided by RefSeq] UniProtKB/Swiss-Prot: BLM_HUMAN, P54132Function: Participates in DNA replication and repair. Exhibits a magnesium-dependent ATP-dependent DNA-helicase activity that unwinds single- and double-stranded DNA in a 3'-5' directionGene Wiki entry for BLM (Bloom_syndrome_protein) |
Genomic Location for BLM
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the BLM gene 
Entrez Gene cytogenetic band: 15q26.1 Ensembl cytogenetic band: 15q26.1 HGNC cytogenetic band: 15q26.1BLM Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure GeneLoc location for GC15P089061:
(about GC identifiers)
Start:
|
89,061,583 bp from pter |
End:
|
89,159,690 bp from pter |
Size:
|
98,108 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000015.8 NT_010274.16
| Proteins for BLM
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: BLM_HUMAN, P54132 (See
protein sequence)Recommended Name: Bloom syndrome protein Size: 1417 amino acids; 159000 Da
Subunit: Part of the BRCA1-associated genome surveillance complex (BASC), which contains BRCA1, MSH2, MSH6, MLH1, ATM, BLM, PMS2 and the RAD50-MRE11-NBS1 protein complex. This association could be a dynamic process changing throughout the cell cycle and within subnuclear domains. Interacts with ubiquitinated FANCD2. Interacts with RMI complex. Interacts directly with RMI1 component of RMI complex
Subcellular location: Nucleus
Secondary accessions: Q52M96Post-translational modifications:
Phosphorylated in response to DNA damage. Phosphorylation requires the FANCA-FANCC-FANCE-FANCF-FANCG protein complex, as well as the presence of RMI11
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000048.1
ENSEMBL proteins: ENSP00000347232
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/10 Gene Ontology (GO) cellular component terms (links to tree view) (see all 10
): About this table
Antibodies for BLM: Assays for BLM: | Protein
Domains/ Families for BLM(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P54132
ProtoNet protein and cluster: P54132 3 Blocks protein families: IPB002121 HRDC domain IPB002464 ATP-dependent helicase IPB012532 BDHCT
UniProtKB/Swiss-Prot: BLM_HUMAN, P54132Similarity: Belongs to the helicase family. RecQ subfamilySimilarity: Contains 1 helicase ATP-binding domainSimilarity: Contains 1 helicase C-terminal domainSimilarity: Contains 1 HRDC domain | Gene Function for BLM
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000057
Applied Biosystems Silencer® siRNAs for BLM
Sigma-Aldrich siRNA and siRNA Panels for BLM  Sigma-Aldrich shRNA Panels and shRNA for BLM  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000057                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000057                                  untagged cDNA clone in CMV expression vector: NM_000057 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000057
UniProtKB/Swiss-Prot: BLM_HUMAN, P54132Function: Participates in DNA replication and repair. Exhibits a magnesium-dependent ATP-dependent DNA-helicase activity that unwinds single- and double-stranded DNA in a 3'-5' directionEnzyme Number (IUBMB): EC 3.6.1.- Genatlas biochemistry entry for BLM:DNA helicase,ATP dependent,expressed in thymus,testis,colocalizing with RPA heterotrimeric ss DNA binding protein in meiotic prophase nuclei of spermatocytes,stimulated by single and DNA double strand breaks,upregulated at the G1-S stage of the cell cycle,homologous to yeast Sgs1,E coli RecQ,involved in DNA repair and maintenance of genome integrity,RecQl family11 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Blm):
5/13 Gene Ontology (GO) molecular function terms (links to tree view) (see all 13
): About this table | Pathways & Interactions for BLM
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for BLM (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for BLM 
5/46 Interacting proteins for BLM (ENSP000003472323 P541321, 2) via UniProtKB, MINT, and/or STRING (see all 46
)About this table
5/20 Gene Ontology (GO) biological process terms (links to tree view) (see all 20
): About this table
|
Drugs & Compounds for BLM(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for BLM 1 Novoseek chemical compound relationship for BLM gene
About this table
|
Transcripts for BLM(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000057
Sigma-Aldrich siRNA and siRNA Panels for BLM  Sigma-Aldrich shRNA Panels and shRNA for BLM  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000057 REFSEQ mRNAs for BLM gene: NM_000057.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000057               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000057                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000057                                  untagged cDNA clone in CMV expression vector: NM_000057  Additional cDNA sequence: AK295194.1 AK303159.1 AK314262.1 AL110293.1 BC034480.1 BC062697.1 BC093622.1 BC101567.1 BC107423.1 BC115028.1 BC115029.1 BC115030.1 BC115031.1 BC115032.1 BC143280.1 BC143288.1 CR597614.1 CR615303.1 U39817.1 7 DOTS entries: DT.454403 DT.100745822 DT.95265873 DT.206072 DT.91694225 DT.210826 DT.40192917 24/75 AceView cDNA sequences (see all 75
):NM_000057 BC034480 AA903504 U39817 AA584761 BM542461 AW575595 BI091601 BM451903 BP363946 AI630521 BI091772 CB243435 BQ230262 CR615303 BM804157 AU185765 AI097184 CR597614 BC062697 AI114820 BX451969 BX643048 BX283839
highest scoring ESTs for BLM:U39817 AA862803 AI590599 AW404657 AW575595 BC034480 BM041661 CB243435 AA480209 AA747832 Unigene Cluster for BLM: Bloom syndrome, RecQ helicase-like Hs.716515 [show with all ESTs]Unigene Representative Sequence: NM_000057
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for BLM (see all 6
)
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18a | · | 18b | ^ | 19 | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23 | ^ | |
| SP1: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 24 | ^ | 25a | · | 25b | |
| SP1: | |   | |   | |   | |
| SP2: | |   | |   | |   | |
| SP3: | |   | |   | |   | |
| SP4: | |   | |   | |   | |
| SP5: | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for BLM
1 Ensembl transcript including schematic representation: ENST00000355112
|
Expression for BLM
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| BLM expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for BLM
1 / 2 / 3 3 probe-sets matching BLM gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAGAAAGATA
SOURCE GeneReport for Unigene cluster: Hs.716515
Expression variation in blood from EXPOLDB for BLM |
Orthologs for BLM
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for BLM gene from 5/15 species (see all 15
)
About this table Species with no ortholog for BLM
ENSEMBL Gene Tree for BLM | Paralogs for BLM(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for BLM gene
- WRN2 RECQL2
|
SNPs/Variants for BLM(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for BLM (up to first 250kb)
|
Disorders & Mutations for BLM
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 612426
UniProtKB/Swiss-Prot: BLM_HUMAN, P54132
Defects in BLM are the cause of Bloom syndrome (BLM) [MIM:210900]. BLM is an autosomal recessive disorder characterized by proportionate pre- and postnatal growth deficiency, sun-sensitive telangiectatic hypo- and hyperpigmented skin, predisposition to malignancy, and chromosomal instability10/15 Novoseek disease relationships for BLM gene (see all 15
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| bloom syndrome |
98.62 |
97 |
15137905 (5), 18401830 (3), 17407155 (2), 9285778 (2) (see all 71) |
| rothmund-thomson syndrome |
91.79 |
12 |
15702347 (1), 12595564 (1), 16793396 (1), 17623900 (1) (see all 12) |
| werner syndrome |
91.73 |
17 |
15702347 (1), 12595564 (1), 16793396 (1), 17623900 (1) (see all 17) |
| skin abnormalities |
69.94 |
2 |
19238688 (1) |
| ataxia telangiectasia |
69.87 |
6 |
16199871 (1), 17768402 (1), 11309417 (1), 17984114 (1) (see all 6) |
| genetic disorder |
68.53 |
6 |
12595564 (1), 18401830 (1), 18430459 (1), 17634426 (1) (see all 6) |
| cancer |
56.90 |
32 |
16181657 (1), 17599064 (1), 18682526 (1), 12595564 (1) (see all 28) |
| nijmegen breakage syndrome |
50.50 |
1 |
11733219 (1) |
| chromosomal aberrations |
43.75 |
2 |
10652259 (1), 10620009 (1) |
| microsatellite instability |
37.31 |
1 |
10861498 (1) |
About this table
Genatlas disease: BLM Bloom syndrome,characterized by dwarfism,sun sensitivity,immunodeficiency and a high risk for various cancers,,with increased chromosomal instability (increased large DNA deletions) and sister chromatide exchanges GeneTests: BLM Bloom's Syndrome Human Gene Mutation Database: BLM Genetic Association Database: BLM Human Genome Epidemiology Navigator: BLM (29 documents)
|
Medical News for BLM(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for BLM (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/224 PubMed articles for BLM gene (see all 224
):- Characterization of a new BLM mutation associated with a topoisomerase II alpha defect in a patient with Bloom's syndrome. (PubMed id 9285778)1, 3, 4, 6 Foucault F.... Amor-Gueret M. (1997)
- The Bloom's syndrome gene product is a 3'-5' DNA helicase. (PubMed id 9388193)2, 3, 4 Karow J.K.... Hickson I.D. (1997)
- A double Holliday junction dissolvasome comprising BLM, topoisomerase III alpha, and BLAP75. (PubMed id 16595695)1, 3, 4 Raynard S.... Sung P. (2006)
- The Bloom's syndrome gene product is homologous to RecQ helicases. (PubMed id 7585968)1, 3, 4 Ellis N.A.... German J. (1995)
- Bloom syndrome and Fanconi's anemia: rate and ethnic origin of mutation carriers in Israel. (PubMed id 11876000)1, 3, 6 Peleg L....Barkai G. (2002)
- BASC, a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures. (PubMed id 10783165)1, 3, 4 Wang Y.... Qin J. (2000)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220)3, 4 Nousiainen M.... Koerner R. (2006)
- Clinical and genetic findings in an Ashkenazi Jewish population with colorectal neoplasms. (PubMed id 15959913)3, 6 Zauber N.P....Bishop D.T. (2005)
- Coinheritance of BRCA1 and BRCA2 mutations with Fanconi anemia and Bloom syndrome mutations in Ashkenazi Jewish population: possible role in risk modification for cancer development. (PubMed id 15726604)3, 6 Koren-Michowitz M....Amariglio N. (2005)
|
Search for BLM
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing BLM
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing BLM
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BLM(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for BLM | Genetics and Cytogenetics in Oncology and Haematology | | BLMbase | http://bioinf.uta.fi/BLMbase/ | | GeneReviews | http://www.genetests.org/query?gene=BLM | | NIEHS-SNPs | http://egp.gs.washington.edu/data/blm/ |
|
| | | About This Section
| --
| Services for BLM(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for BLM:

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Incremental update: 13 Oct 2009
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