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Aliases for BLACAT1 Gene

Subcategory (RNA class) for BLACAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BLACAT1 Gene

  • Bladder Cancer Associated Transcript 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Noncoding RNA Up-Regulated In Bladder Cancer 2 3
  • Long Intergenic Non-Protein Coding RNA 912 2 3
  • Onco-LncRNA-30 3
  • LINC00912 3
  • Linc-UBC1 3

External Ids for BLACAT1 Gene

Previous GeneCards Identifiers for BLACAT1 Gene

  • GC01U903707

Summaries for BLACAT1 Gene

GeneCards Summary for BLACAT1 Gene

BLACAT1 (Bladder Cancer Associated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BLACAT1 Gene

Genomics for BLACAT1 Gene

Regulatory Elements for BLACAT1 Gene

Enhancers for BLACAT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G205454 1.3 Ensembl ENCODE dbSUPER 0.7 -0.1 -142 3.3 PKNOX1 ZSCAN4 KLF17 RAD21 GLIS2 SCRT2 ZNF398 REST MIER2 CBX8 LEMD1 BLACAT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BLACAT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BLACAT1 Gene

Chromosome:
1
Start:
205,434,886 bp from pter
End:
205,456,086 bp from pter
Size:
21,201 bases
Orientation:
Minus strand

Genomic View for BLACAT1 Gene

Genes around BLACAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BLACAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BLACAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BLACAT1 Gene

Proteins for BLACAT1 Gene

Post-translational modifications for BLACAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BLACAT1 Gene

Domains & Families for BLACAT1 Gene

Gene Families for BLACAT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BLACAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BLACAT1 Gene

Function for BLACAT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BLACAT1 Gene

Localization for BLACAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BLACAT1 Gene

Pathways & Interactions for BLACAT1 Gene

SuperPathways for BLACAT1 Gene

No Data Available

Interacting Proteins for BLACAT1 Gene

Gene Ontology (GO) - Biological Process for BLACAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BLACAT1 Gene

Drugs & Compounds for BLACAT1 Gene

No Compound Related Data Available

Transcripts for BLACAT1 Gene

mRNA/cDNA for BLACAT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BLACAT1 Gene

No ASD Table

Relevant External Links for BLACAT1 Gene

GeneLoc Exon Structure for
BLACAT1
ECgene alternative splicing isoforms for
BLACAT1

Expression for BLACAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of BLACAT1 Gene:

BLACAT1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BLACAT1 Gene

Orthologs for BLACAT1 Gene

Evolution for BLACAT1 Gene

ENSEMBL:
Gene Tree for BLACAT1 (if available)
TreeFam:
Gene Tree for BLACAT1 (if available)

No data available for Orthologs for BLACAT1 Gene

Paralogs for BLACAT1 Gene

No data available for Paralogs for BLACAT1 Gene

Variants for BLACAT1 Gene

Sequence variations from dbSNP and Humsavar for BLACAT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000000971 -- 205,444,187(+) ACAGC(A/C)CCCAG intron-variant
rs1000095534 -- 205,444,426(+) ATAGA(G/T)CATCC intron-variant
rs1000105702 -- 205,444,381(+) TGCCC(A/C)GCCAG intron-variant
rs1000171642 -- 205,442,889(+) TTCTA(C/T)TCCTG intron-variant
rs1000371276 -- 205,449,244(+) CCTGG(-/A)AAAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BLACAT1 Gene

Variant ID Type Subtype PubMed ID
nsv1014629 CNV gain 25217958
nsv1068038 CNV deletion 25765185
nsv832381 CNV gain 17160897
nsv952642 CNV deletion 24416366
nsv952643 CNV deletion 24416366

Relevant External Links for BLACAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BLACAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BLACAT1 Gene

Disorders for BLACAT1 Gene

Relevant External Links for BLACAT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BLACAT1

No disorders were found for BLACAT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BLACAT1 Gene

Publications for BLACAT1 Gene

  1. linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer. (PMID: 23688781) He W. … Lin T. (Biochim. Biophys. Acta 2013) 2 3 64
  2. Long noncoding RNA linc-UBC1 is negative prognostic factor and exhibits tumor pro-oncogenic activity in gastric cancer. (PMID: 25755750) Hu Y. … Huang Y. (Int J Clin Exp Pathol 2015) 3 64
  3. Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function. (PMID: 25864709) Cabanski C.R. … Maher C.A. (RNA Biol 2015) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for BLACAT1 Gene

Sources for BLACAT1 Gene

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