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Aliases for BIVM-ERCC5 Gene

Aliases for BIVM-ERCC5 Gene

  • BIVM-ERCC5 Readthrough 2 3 5
  • BIVM-ERCC5 Protein 3
  • ERCC5-202 3

External Ids for BIVM-ERCC5 Gene

Previous GeneCards Identifiers for BIVM-ERCC5 Gene

  • GC13U900839
  • GC13P103460
  • GC13P103461

Summaries for BIVM-ERCC5 Gene

Entrez Gene Summary for BIVM-ERCC5 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring BIVM (basic, immunoglobulin-like variable motif containing) and ERCC5 (excision repair cross-complementing rodent repair deficiency, complementation group 5) genes on chromosome 13. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Feb 2011]

GeneCards Summary for BIVM-ERCC5 Gene

BIVM-ERCC5 (BIVM-ERCC5 Readthrough) is a Protein Coding gene. Among its related pathways are Nucleotide excision repair. GO annotations related to this gene include single-stranded DNA binding and nuclease activity. An important paralog of this gene is ERCC5.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BIVM-ERCC5 Gene

Genomics for BIVM-ERCC5 Gene

Regulatory Elements for BIVM-ERCC5 Gene

Enhancers for BIVM-ERCC5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BIVM-ERCC5 on UCSC Golden Path with GeneCards custom track

Genomic Location for BIVM-ERCC5 Gene

102,807,146 bp from pter
102,876,001 bp from pter
68,856 bases
Plus strand

Genomic View for BIVM-ERCC5 Gene

Genes around BIVM-ERCC5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BIVM-ERCC5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BIVM-ERCC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BIVM-ERCC5 Gene

Proteins for BIVM-ERCC5 Gene

  • Protein details for BIVM-ERCC5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein BIVM-ERCC5
    Protein Accession:

    Protein attributes for BIVM-ERCC5 Gene

    1385 amino acids
    Molecular mass:
    156070 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BIVM-ERCC5 Gene

Post-translational modifications for BIVM-ERCC5 Gene

No Post-translational modifications

Other Protein References for BIVM-ERCC5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BIVM-ERCC5 Gene

Domains & Families for BIVM-ERCC5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BIVM-ERCC5: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BIVM-ERCC5 Gene

Function for BIVM-ERCC5 Gene

Gene Ontology (GO) - Molecular Function for BIVM-ERCC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003697 single-stranded DNA binding IBA --
GO:0003824 catalytic activity IEA --
GO:0004518 nuclease activity IEA --
GO:0004519 endonuclease activity IEA --
GO:0004520 endodeoxyribonuclease activity IBA --
genes like me logo Genes that share ontologies with BIVM-ERCC5: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BIVM-ERCC5 Gene

Localization for BIVM-ERCC5 Gene

Gene Ontology (GO) - Cellular Components for BIVM-ERCC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with BIVM-ERCC5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for BIVM-ERCC5 Gene

Pathways & Interactions for BIVM-ERCC5 Gene

SuperPathways for BIVM-ERCC5 Gene

SuperPathway Contained pathways
1 Nucleotide excision repair
genes like me logo Genes that share pathways with BIVM-ERCC5: view

Pathways by source for BIVM-ERCC5 Gene

1 KEGG pathway for BIVM-ERCC5 Gene

Interacting Proteins for BIVM-ERCC5 Gene

Gene Ontology (GO) - Biological Process for BIVM-ERCC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006281 DNA repair IEA --
GO:0006289 nucleotide-excision repair IEA --
GO:0006295 nucleotide-excision repair, DNA incision, 3-to lesion IBA --
genes like me logo Genes that share ontologies with BIVM-ERCC5: view

No data available for SIGNOR curated interactions for BIVM-ERCC5 Gene

Transcripts for BIVM-ERCC5 Gene


(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BIVM-ERCC5 Gene

No ASD Table

Relevant External Links for BIVM-ERCC5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BIVM-ERCC5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BIVM-ERCC5 Gene

Orthologs for BIVM-ERCC5 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for BIVM-ERCC5 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia BIVM-ERCC5 35
  • 84 (a)
(Canis familiaris)
Mammalia BIVM 35
  • 71 (a)
(Bos Taurus)
Mammalia ERCC5 35
  • 69 (a)
(Mus musculus)
Mammalia Ercc5 35
  • 56 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 49 (a)
(Gallus gallus)
Aves ERCC5 35
  • 45 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 47 (a)
(Danio rerio)
Actinopterygii ercc5 35
  • 38 (a)
fruit fly
(Drosophila melanogaster)
Insecta mus201 35
  • 21 (a)
(Caenorhabditis elegans)
Secernentea gen-1 35
  • 21 (a)
xpg-1 35
  • 20 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RAD2 35
  • 21 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 29 (a)
Species where no ortholog for BIVM-ERCC5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for BIVM-ERCC5 Gene

Gene Tree for BIVM-ERCC5 (if available)
Gene Tree for BIVM-ERCC5 (if available)

Paralogs for BIVM-ERCC5 Gene

Paralogs for BIVM-ERCC5 Gene

(3) SIMAP similar genes for BIVM-ERCC5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with BIVM-ERCC5: view

Variants for BIVM-ERCC5 Gene

Sequence variations from dbSNP and Humsavar for BIVM-ERCC5 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs121434570 Pathogenic 102,872,397(+) TTAGA(A/G/T)AATAT reference, missense, stop-gained
rs121434571 Pathogenic 102,866,687(+) AGAGG(C/T)GCAGT reference, missense
rs121434572 Pathogenic 102,861,621(+) ACATC(C/T)GAAGG reference, stop-gained
rs121434573 Pathogenic 102,856,110(+) CATTA(C/T)AGGTA reference, stop-gained
rs121434574 Pathogenic 102,852,244(+) TCGTC(A/C/T)TATTT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for BIVM-ERCC5 Gene

Variant ID Type Subtype PubMed ID
esv2661939 CNV deletion 23128226
esv3633382 CNV loss 21293372
nsv562981 CNV gain 21841781
nsv1048497 CNV gain 25217958

Relevant External Links for BIVM-ERCC5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BIVM-ERCC5 Gene

Disorders for BIVM-ERCC5 Gene

Relevant External Links for BIVM-ERCC5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for BIVM-ERCC5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BIVM-ERCC5 Gene

Publications for BIVM-ERCC5 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64

Products for BIVM-ERCC5 Gene

Sources for BIVM-ERCC5 Gene

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