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Aliases for BISPR Gene

Subcategory (RNA class) for BISPR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BISPR Gene

  • BST2 Interferon Stimulated Positive Regulator (Non-Protein Coding) 2 3 5
  • BST2 IFN-Stimulated Positive Regulator 3
  • CTD-2521M24.9 3
  • LncBST2 3

External Ids for BISPR Gene

Previous GeneCards Identifiers for BISPR Gene

  • GC19P017551
  • GC19P017705
  • GC19P017730
  • GC19P018350
  • GC19P018733
  • GC19P019045

Summaries for BISPR Gene

GeneCards Summary for BISPR Gene

BISPR (BST2 Interferon Stimulated Positive Regulator (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BISPR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BISPR Gene

Genomics for BISPR Gene

Regulatory Elements for BISPR Gene

Enhancers for BISPR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H017403 1.3 ENCODE dbSUPER 16.6 -0.1 -120 5 HDGF PKNOX1 ARNT SIN3A ARID4B DMAP1 YY1 SLC30A9 ZNF766 ZNF143 MVB12A ENSG00000267904 ENSG00000268087 CHERP C19orf44 ENSG00000269578 BISPR ENSG00000268743 SMIM7 ENSG00000269427
GH19H017424 1.2 Ensembl ENCODE 16.8 +19.4 19361 0 HDAC1 PKNOX1 ATF1 RB1 ARNT ZNF76 GLI4 ZNF2 RAD21 GLIS2 BISPR ENSG00000269481 TMEM221
GH19H017394 1.5 Ensembl ENCODE dbSUPER 12.1 -10.5 -10500 1 HDGF PKNOX1 ATF1 ARNT YBX1 GLI4 ZNF2 ZNF121 ZNF143 ATF7 BISPR BST2 CCDC194 LOC105372343
GH19H017411 1.3 Ensembl ENCODE dbSUPER 12.3 +7.3 7253 2 PKNOX1 ZIC2 ZNF121 ZFHX2 ZNF316 ZBTB48 SCRT2 ZNF600 PRDM10 MAFK BISPR MVB12A SIN3B HMGB3P29
GH19H017418 1.1 ENCODE 13.3 +14.2 14222 2 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 MVB12A CHERP ENSG00000269578 BISPR ENSG00000268087 GTPBP3 ENSG00000267904 HAUS8 SLC35E1 KIAA1683
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BISPR on UCSC Golden Path with GeneCards custom track

Promoters for BISPR Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000287702 14 1801 HDGF PKNOX1 ARNT SIN3A ARID4B DMAP1 YY1 TCF12 SLC30A9 ZNF766
ENSR00000287701 -1586 1001 SMARCA5 PTBP1 ARNT SIN3A MNT ZFHX2 MTA3 POLR2A IKZF1 ZNF600
ENSR00000107898 1714 401 HDAC1 TBP PKNOX1 ATF1 ARNT ARID4B SMAD5 USF2 REST ZEB2

Genomic Location for BISPR Gene

Chromosome:
19
Start:
17,405,686 bp from pter
End:
17,418,904 bp from pter
Size:
13,219 bases
Orientation:
Plus strand

Genomic View for BISPR Gene

Genes around BISPR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BISPR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BISPR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BISPR Gene

Proteins for BISPR Gene

Post-translational modifications for BISPR Gene

No Post-translational modifications

No data available for DME Specific Peptides for BISPR Gene

Domains & Families for BISPR Gene

Gene Families for BISPR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BISPR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BISPR Gene

Function for BISPR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BISPR Gene

Localization for BISPR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BISPR Gene

Pathways & Interactions for BISPR Gene

SuperPathways for BISPR Gene

No Data Available

Interacting Proteins for BISPR Gene

Gene Ontology (GO) - Biological Process for BISPR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BISPR Gene

Drugs & Compounds for BISPR Gene

No Compound Related Data Available

Transcripts for BISPR Gene

mRNA/cDNA for BISPR Gene

(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BISPR Gene

No ASD Table

Relevant External Links for BISPR Gene

GeneLoc Exon Structure for
BISPR
ECgene alternative splicing isoforms for
BISPR

Expression for BISPR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BISPR Gene

NURSA nuclear receptor signaling pathways regulating expression of BISPR Gene:

BISPR
genes like me logo Genes that share expression patterns with BISPR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BISPR Gene

Orthologs for BISPR Gene

Evolution for BISPR Gene

ENSEMBL:
Gene Tree for BISPR (if available)
TreeFam:
Gene Tree for BISPR (if available)

No data available for Orthologs for BISPR Gene

Paralogs for BISPR Gene

No data available for Paralogs for BISPR Gene

Variants for BISPR Gene

Sequence variations from dbSNP and Humsavar for BISPR Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000157410 -- 17,408,539(+) CCTCC(A/G)GAGTT intron-variant
rs1000906895 -- 17,406,000(+) AGTTG(C/T)GTGGT intron-variant
rs1000937391 -- 17,406,221(+) AATGT(C/T)GGTCT nc-transcript-variant, utr-variant-5-prime
rs1001005661 -- 17,413,074(+) AGGGC(-/T)TTTTT intron-variant
rs1001013922 -- 17,412,837(+) GAGGG(C/T)TGATG intron-variant

Relevant External Links for BISPR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BISPR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BISPR Gene

Disorders for BISPR Gene

Relevant External Links for BISPR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BISPR

No disorders were found for BISPR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BISPR Gene

Publications for BISPR Gene

  1. Long Non-Coding RNA BST2/BISPR is Induced by IFN and Regulates the Expression of the Antiviral Factor Tetherin. (PMID: 25620967) Barriocanal M … Fortes P (Frontiers in immunology 2014) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for BISPR Gene

Sources for BISPR Gene

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