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Aliases for BIN3-IT1 Gene

Subcategory (RNA class) for BIN3-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for BIN3-IT1 Gene

  • BIN3 Intronic Transcript 1 2 3
  • BIN3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for BIN3-IT1 Gene

ORGUL Members for BIN3-IT1 Gene

Previous GeneCards Identifiers for BIN3-IT1 Gene

  • GC08M022498

Summaries for BIN3-IT1 Gene

GeneCards Summary for BIN3-IT1 Gene

BIN3-IT1 (BIN3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BIN3-IT1 Gene

Genomics for BIN3-IT1 Gene

Regulatory Elements for BIN3-IT1 Gene

Enhancers for BIN3-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F022638 0.9 Ensembl ENCODE 0.8 -0.8 -838 8.7 BCOR CTCF TFAP4 SAP130 CEBPG ZNF121 FOXK2 NCOR1 POLR2A GATA2 C8orf58 ENSG00000253200 CCAR2 BIN3 ENSG00000248235 PDLIM2 LOC101929237 RHOBTB2 BIN3-IT1 PIR54442
GH08F022650 1.2 Ensembl ENCODE 0.4 -9.3 -9307 2.9 TBP BHLHE40 KLF17 ZEB2 ZBTB40 KDM1A ZNF600 FOS PRDM1 MAFK ENSG00000253200 CCAR2 LOC101929237 ENSG00000248235 PDLIM2 C8orf58 BIN3-IT1 PIR54442
GH08F022656 1 Ensembl ENCODE 0.3 -16.8 -16792 4.1 CBX3 GATA2 FOS EGR2 ZNF263 ZBTB2 JUNB CEBPB ZEB2 REST PIR54442 BIN3-IT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BIN3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BIN3-IT1 Gene

Chromosome:
8
Start:
22,640,371 bp from pter
End:
22,642,209 bp from pter
Size:
1,839 bases
Orientation:
Minus strand

Genomic View for BIN3-IT1 Gene

Genes around BIN3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BIN3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BIN3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BIN3-IT1 Gene

Proteins for BIN3-IT1 Gene

Post-translational modifications for BIN3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BIN3-IT1 Gene

Domains & Families for BIN3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BIN3-IT1 Gene

Function for BIN3-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BIN3-IT1 Gene

Localization for BIN3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BIN3-IT1 Gene

Pathways & Interactions for BIN3-IT1 Gene

SuperPathways for BIN3-IT1 Gene

No Data Available

Interacting Proteins for BIN3-IT1 Gene

Gene Ontology (GO) - Biological Process for BIN3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BIN3-IT1 Gene

Transcripts for BIN3-IT1 Gene

mRNA/cDNA for BIN3-IT1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for BIN3-IT1 Gene

No ASD Table

Relevant External Links for BIN3-IT1 Gene

GeneLoc Exon Structure for
BIN3-IT1
ECgene alternative splicing isoforms for
BIN3-IT1

Expression for BIN3-IT1 Gene

mRNA expression in normal human tissues for BIN3-IT1 Gene

genes like me logo Genes that share expression patterns with BIN3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BIN3-IT1 Gene

Orthologs for BIN3-IT1 Gene

No data available for Orthologs and Evolution for BIN3-IT1 Gene

Paralogs for BIN3-IT1 Gene

No data available for Paralogs for BIN3-IT1 Gene

Variants for BIN3-IT1 Gene

Sequence variations from dbSNP and Humsavar for BIN3-IT1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10429308 -- 22,642,234(+) TCCCT(A/G)AAAGT intron-variant, upstream-variant-2KB
rs10429337 -- 22,644,072(+) cttga(C/G)gaagt intron-variant, upstream-variant-2KB
rs111736486 -- 22,640,817(+) TAGGT(G/T)GATCA intron-variant, nc-transcript-variant
rs111994113 -- 22,641,209(+) AACAC(-/AT)GTGCA intron-variant, nc-transcript-variant
rs112001452 -- 22,640,816(+) CTAGG(C/G/T)TGATC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for BIN3-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
esv3572633 CNV loss 25503493

Relevant External Links for BIN3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BIN3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BIN3-IT1 Gene

Disorders for BIN3-IT1 Gene

Relevant External Links for BIN3-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BIN3-IT1

No disorders were found for BIN3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BIN3-IT1 Gene

Publications for BIN3-IT1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for BIN3-IT1 Gene

Sources for BIN3-IT1 Gene

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