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Aliases for BIN3-IT1 Gene

Subcategory (RNA class) for BIN3-IT1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for BIN3-IT1 Gene

  • BIN3 Intronic Transcript 1 2 3
  • BIN3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for BIN3-IT1 Gene

ORGUL Members for BIN3-IT1 Gene

Previous GeneCards Identifiers for BIN3-IT1 Gene

  • GC08M022498

Summaries for BIN3-IT1 Gene

GeneCards Summary for BIN3-IT1 Gene

BIN3-IT1 (BIN3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for BIN3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BIN3-IT1 Gene

Genomics for BIN3-IT1 Gene

Regulatory Elements for BIN3-IT1 Gene

Enhancers for BIN3-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H022638 1.3 Ensembl ENCODE dbSUPER 0.7 +0.0 42 6 BCOR HDAC1 TFAP4 KLF1 ATF1 SAP130 CEBPG TCF12 ZNF121 MTA3 C8orf58 ENSG00000253200 CCAR2 BIN3 ENSG00000248235 PDLIM2 LOC101929237 RHOBTB2 BIN3-IT1 GC08P022638
GH08H022645 0.9 Ensembl ENCODE dbSUPER 0.7 -4.2 -4221 1 SP7 ENSG00000253200 CCAR2 BIN3 C8orf58 ENSG00000248235 PDLIM2 LOC101929237 BIN3-IT1 PIR54442
GH08H022656 1.3 Ensembl ENCODE dbSUPER 0.4 -16.8 -16792 4 HDGF FOXA2 TCF12 GATA2 EGR1 FOS RCOR1 EGR2 ZBTB2 CEBPB PIR54442 BIN3-IT1
GH08H022650 1.1 Ensembl ENCODE dbSUPER 0.4 -9.3 -9307 2 TBP ZNF10 KLF17 ZEB2 JUND FOS KDM1A ZNF600 MAFK PRDM1 ENSG00000253200 CCAR2 LOC101929237 ENSG00000248235 PDLIM2 C8orf58 PIR54442 BIN3-IT1
GH08H022648 0.6 dbSUPER 0.4 -6.6 -6571 1 FOXA2 FOXK2 FOXA3 ZNF10 ZNF600 HNF4A PRDM1 C8orf58 BIN3 ENSG00000253200 CCAR2 ENSG00000248235 PDLIM2 LOC101929237 BIN3-IT1 PIR54442
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BIN3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BIN3-IT1 Gene

Chromosome:
8
Start:
22,640,371 bp from pter
End:
22,642,209 bp from pter
Size:
1,839 bases
Orientation:
Minus strand

Genomic View for BIN3-IT1 Gene

Genes around BIN3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BIN3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BIN3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BIN3-IT1 Gene

Proteins for BIN3-IT1 Gene

Post-translational modifications for BIN3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BIN3-IT1 Gene

Domains & Families for BIN3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BIN3-IT1 Gene

Function for BIN3-IT1 Gene

Phenotypes From GWAS Catalog for BIN3-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BIN3-IT1 Gene

Localization for BIN3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BIN3-IT1 Gene

Pathways & Interactions for BIN3-IT1 Gene

SuperPathways for BIN3-IT1 Gene

No Data Available

Interacting Proteins for BIN3-IT1 Gene

Gene Ontology (GO) - Biological Process for BIN3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BIN3-IT1 Gene

Drugs & Compounds for BIN3-IT1 Gene

No Compound Related Data Available

Transcripts for BIN3-IT1 Gene

mRNA/cDNA for BIN3-IT1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for BIN3-IT1 Gene

No ASD Table

Relevant External Links for BIN3-IT1 Gene

GeneLoc Exon Structure for
BIN3-IT1
ECgene alternative splicing isoforms for
BIN3-IT1

Expression for BIN3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BIN3-IT1 Gene

genes like me logo Genes that share expression patterns with BIN3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BIN3-IT1 Gene

Orthologs for BIN3-IT1 Gene

No data available for Orthologs and Evolution for BIN3-IT1 Gene

Paralogs for BIN3-IT1 Gene

No data available for Paralogs for BIN3-IT1 Gene

Variants for BIN3-IT1 Gene

Sequence variations from dbSNP and Humsavar for BIN3-IT1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000581370 -- 22,641,566(+) GAAGC(C/T)CCTCC intron-variant, nc-transcript-variant
rs1001839117 -- 22,642,423(+) TATAG(C/G)CCAGG intron-variant, upstream-variant-2KB
rs1002808045 -- 22,643,267(+) CTCTG(C/T)ATGAG intron-variant, upstream-variant-2KB
rs1002842209 -- 22,643,480(+) CGTGC(A/G)TATTT intron-variant, upstream-variant-2KB
rs1005057687 -- 22,643,426(+) CGTGC(A/G)CTCAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BIN3-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2759604 CNV loss 17122850
esv3572633 CNV loss 25503493

Relevant External Links for BIN3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BIN3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BIN3-IT1 Gene

Disorders for BIN3-IT1 Gene

Relevant External Links for BIN3-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BIN3-IT1

No disorders were found for BIN3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BIN3-IT1 Gene

Publications for BIN3-IT1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for BIN3-IT1 Gene

Sources for BIN3-IT1 Gene

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