BICC1 Gene
protein-coding GIFtS : 48
GCID: GC10 P060272
bicaudal C homolog 1 (Drosophila)
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Aliasesfor BICC1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Bicaudal C Homolog 1 (Drosophila) 1 2 BICC2 CYSRD2 Bic-C3 Protein Bicaudal C Homolog 12 Bic-C3
Export aliases for BICC1 gene to outside databases Previous GC identifers: GC10P059348 GC10P059578 GC10P060445 GC10P059897 GC10P060223 GC10P054263
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Summariesfor BICC1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for BICC1 : This gene encodes an RNA-binding protein that is active in regulating gene expression by modulating protein translation during embryonic development. Mouse studies identified the corresponding protein to be under strict control during cell differentiation and to be a maternally provided gene product. (provided by RefSeq, Apr 2009) UniProtKB/Swiss-Prot: BICC1_HUMAN, Q9H694 Function : Putative RNA-binding protein. Acts as a negative regulator of Wnt signaling. May be involved in regulatinggene expression during embryonic development
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Genomic Viewsfor BICC1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000010.10 NC_018921.1 NT_030059.13 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the BICC1 gene promoter: Nkx3-1 Nkx3-1 v4 Nkx3-1 v1 Ik-3 HNF-1A Nkx3-1 v2 SRY HNF-1 FOXO1a Nkx3-1 v3 Other transcription factors Search SABiosciences Chromatin IP Primers for BICC1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BICC1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q21.1 Ensembl cytogenetic band: 10q21.1 HGNC cytogenetic band: 10q21.3 BICC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P060272: view genomic region
(about GC identifiers )
Start:
60,272,900 bp from pter
End:
60,591,195 bp from pter
Size:
318,296 bases
Orientation:
plus strand
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Proteinsfor BICC1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: BICC1_HUMAN, Q9H694 (See
protein sequence )Recommended Name: Protein bicaudal C homolog 1 Size : 974 amino acids; 104844 Da
Sequence caution : Sequence=BAB15369.1; Type=Erroneous initiation;Alternative splicing : 2 isoforms : Q9H694-1 Q9H694-2 Explore the universe of human proteins at neXtProt for BICC1: NX_Q9H694 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9H694 BICC1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001073981.1 ENSEMBL proteins: ENSP00000362993 ENSP00000263103 Human Recombinant Protein Products: BICC1 Antibody Products: Assay Products for BICC1:
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Protein
Domains / Familiesfor BICC1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
BICC1 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9H694 ProtoNet protein and cluster: Q9H694
UniProtKB/Swiss-Prot: BICC1_HUMAN, Q9H694 Similarity : Belongs to the BicC familySimilarity : Contains 2 KH domainsSimilarity : Contains 1 SAM (sterile alpha motif) domain
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Functionfor BICC1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: BICC1_HUMAN, Q9H694 Function : Putative RNA-binding protein. Acts as a negative regulator of Wnt signaling. May be involved in regulatinggene expression during embryonic development
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BICC1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BICC1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BICC1 (NM_001080512 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BICC1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BICC1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BICC1
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003723 RNA binding
IEA --
BICC1 for ontologies About GeneDecksing Animal Models: Mouse knock-out Bicc1 tm1Bdc for BICC1 11 MGI mutant phenotypes (inferred from 8 alleles ) (MGI details for Bicc1) :
BICC1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor BICC1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BICC1 STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)5/6 Interacting proteins for BICC1 (Q9H694 3 ENSP00000362993 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 6 )About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007275 multicellular organismal development
IEA -- GO:0090090 negative regulation of canonical Wnt receptor signaling pathway
IDA --
BICC1 for ontologies About GeneDecksing
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Drugs & Compoundsfor BICC1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for BICC1 Search CenterWatch for drugs/clinical trials and news about BICC1
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Transcriptsfor BICC1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for BICC1 gene: NM_001080512.1 Unigene Cluster for BICC1:
Bicaudal C homolog 1 (Drosophila) Hs.158745 [show with all ESTs ] Unigene Representative Sequence: NM_001080512 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000373886 (uc001jki.1 ) ENST00000476684 ENST00000263103 (uc001jkj.1 )Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BICC1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BICC1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: BICC1 (NM_001080512 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BICC1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BICC1
Additional cDNA sequence: AK026129.1 AK225427.1 AK225429.1 AK307780.1 AY726586.1
2 DOTS entries : DT.97806694 DT.97818140
9 AceView cDNA sequences :
BX282230 AA424272 BG751458 AI242865 BX538102 AK026129 BM972104 BG163356 AI375513 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for BICC1 About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 SP1 :                       SP2 :                      
ECgene alternative splicing isoforms for BICC1
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Expression for BICC1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section BICC1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CCCGCTGACT
About this image BICC1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See BICC1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for BICC1 SOURCE GeneReport for Unigene cluster: Hs.158745 SABiosciences Custom PCR Arrays for BICC1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BICC1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat BICC1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BICC1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BICC1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BICC1
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Orthologsfor BICC1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for BICC1 gene from 7/22 species (see all 22 ) About this table
ENSEMBL Gene Tree for BICC1 (if available)TreeFam Gene Tree for BICC1 (if available)
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Paralogsfor BICC1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for BICC1 gene ANKS6 2
BICC1 for paralogs About GeneDecksing
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Genomic Variantsfor BICC1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 10 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for BICC1 (60272900 - 60522900 bp, first 250kb of BICC1)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 5 variations for BICC1 2 CNVs : 71026 6876 3 Indels : 60014 11038 71025 Human Gene Mutation Database (HGMD) : BICC1 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing BICC1
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Disorders
/ Diseasesfor BICC1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
BICC1 for disorders About GeneDecksing
OMIM gene information: 614295
OMIM disorders : --UniProtKB/Swiss-Prot: BICC1_HUMAN, Q9H694
Defects in BICC1 are a cause of susceptibility to renal dysplasia, cystic (CYSRD) [MIM:601331]. An anomaly of the kidney characterized by numerous renal cysts and apparent disorder of differentiation of the renal parenchyma. Kidney of affected individuals lack the normal renal bean shape, and the collection drainage system. The cystic, dysplastic kidney contains undifferentiated mesenchyme, cartilaginous tissue, and immature collecting ducts 5 diseases for BICC1 : About MalaCards polycystic kidney disease cystic kidney kidney disease alzheimer's disease cholesterol 1 disease from the University of Copenhagen DISEASES database for BICC1 :Polycystic kidney disease Genetic Association Database (GAD): BICC1 Human Genome Epidemiology (HuGE) Navigator: BICC1 (5 documents) Export disorders for BICC1 gene to outside databases
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Publicationsfor BICC1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for BICC1 gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with BICC1) Utopia : connect your pdf to the dynamic world of online information
Two mutations in human BICC1 resulting in Wnt pathway hyperactivity associated with cystic renal dysplasia. (PubMed id 21922595) 1 , 2 Kraus M.R.... Grapin-Botton A. (2011) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Association analysis of genes involved in cholesterol metabolism located within the linkage region on chromosome 10 and Alzheimer's disease. (PubMed id 15465627) 1 , 4 Riemenschneider M.... Kurz A. (2004) Genome-wide association study of major recurrent depression in the U.K. population. (PubMed id 20516156) 1 Lewis C.M....McGuffin P. (2010) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231) 2 Olsen J.V....Mann M. (2010) Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861) 2 Choudhary C.... Mann M. (2009) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 2 Olsen J.V....Mann M. (2006) A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PubMed id 16385451) 1 Grupe A....Goate A. (2006) Identification and expression of the mammalian homologue of Bicaudal-C. (PubMed id 11231089) 1 Wessely O....De Robertis E.M. (2001)
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External Searches for BICC1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing BICC1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing BICC1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing BICC1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for BICC1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for BICC1 gene: Search GeneIP for patents involving BICC1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor BICC1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for BICC1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for BICC1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for BICC1 OriGene Protein Over-expression Lysate for BICC1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for BICC1 OriGene 3'-UTR Clone for BICC1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for BICC1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for BICC1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for BICC1 OriGene Custom Protein Services for BICC1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat BICC1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing BICC1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat BICC1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat BICC1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat BICC1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat BICC1
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BICC1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BICC1
Search ThermoFisher Antibodies for BICC1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat BICC1
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Aliases for BICC1
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Disorders / Diseases for BICC1
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Expression for BICC1
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