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Aliases for BHMG1 Gene

Aliases for BHMG1 Gene

  • Basic Helix-Loop-Helix And HMG-Box Containing 1 2 3 5
  • Basic Helix-Loop-Helix And HMG Box Domain Containing 1 2 3
  • HMG Domain Containing 2 3
  • Basic Helix-Loop-Helix And HMG Box Domain-Containing Protein 1 3
  • HMGDC 3

External Ids for BHMG1 Gene

Summaries for BHMG1 Gene

GeneCards Summary for BHMG1 Gene

BHMG1 (Basic Helix-Loop-Helix And HMG-Box Containing 1) is a Protein Coding gene. GO annotations related to this gene include chromatin binding and protein dimerization activity.

Additional gene information for BHMG1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BHMG1 Gene

Genomics for BHMG1 Gene

Regulatory Elements for BHMG1 Gene

Enhancers for BHMG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H045763 1.7 Ensembl ENCODE dbSUPER 21.2 +45.0 44950 10 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 CCDC61 SYMPK CLASRP FBXO46 ENSG00000267114 ENSG00000268810 ENSG00000269148 DMPK BHMG1 DMWD
GH19H045880 1.7 FANTOM5 ENCODE dbSUPER 10.1 +158.4 158437 3 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A YBX1 YY1 SLC30A9 CCDC61 FBXO46 CLASRP ENSG00000268810 RPS16P9 ENSG00000269148 SYMPK BHMG1 IRF2BP1 FOXA3
GH19H045861 1.7 Ensembl ENCODE dbSUPER 10.1 +140.7 140697 5 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ENSG00000268810 DMWD SYMPK CCDC61 CLASRP ENSG00000267114 RPS16P9 SLC1A5 FBXO46 IRF2BP1
GH19H045401 1.7 FANTOM5 ENCODE dbSUPER 10 -319.3 -319320 6 FEZF1 YY1 ZNF143 SP3 MEF2D GLIS1 RCOR2 NBN NR2C1 KDM1A ZNF180 CCDC61 CLASRP FBXO46 ENSG00000269148 CD3EAP IRF2BP1 ERCC1 RPS16P9 ENSG00000267614
GH19H045466 1.4 ENCODE dbSUPER 10 -254.8 -254796 4 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZBTB7B ZNF143 ZNF207 FOS FBXO46 ZNF180 CCDC61 CLASRP CD3EAP ENSG00000269148 RPS16P9 ENSG00000267614 BLOC1S3 PPP1R13L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BHMG1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BHMG1 Gene

Chromosome:
19
Start:
45,723,892 bp from pter
End:
45,764,539 bp from pter
Size:
40,648 bases
Orientation:
Plus strand

Genomic View for BHMG1 Gene

Genes around BHMG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BHMG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BHMG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BHMG1 Gene

Proteins for BHMG1 Gene

  • Protein details for BHMG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JSJ3-BHMG1_HUMAN
    Recommended name:
    Basic helix-loop-helix and HMG box domain-containing protein 1
    Protein Accession:
    C9JSJ3

    Protein attributes for BHMG1 Gene

    Size:
    638 amino acids
    Molecular mass:
    70198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BHMG1 Gene

Post-translational modifications for BHMG1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for BHMG1 Gene

No data available for DME Specific Peptides for BHMG1 Gene

Domains & Families for BHMG1 Gene

Gene Families for BHMG1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for BHMG1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BHMG1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BHMG1 Gene

Function for BHMG1 Gene

Phenotypes From GWAS Catalog for BHMG1 Gene

Gene Ontology (GO) - Molecular Function for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046983 protein dimerization activity IEA --
genes like me logo Genes that share ontologies with BHMG1: view

Phenotypes for BHMG1 Gene

GenomeRNAi human phenotypes for BHMG1:
genes like me logo Genes that share phenotypes with BHMG1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BHMG1 Gene

Localization for BHMG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BHMG1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BHMG1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with BHMG1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for BHMG1 Gene

Pathways & Interactions for BHMG1 Gene

SuperPathways for BHMG1 Gene

No Data Available

Interacting Proteins for BHMG1 Gene

Gene Ontology (GO) - Biological Process for BHMG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with BHMG1: view

No data available for Pathways by source and SIGNOR curated interactions for BHMG1 Gene

Drugs & Compounds for BHMG1 Gene

No Compound Related Data Available

Transcripts for BHMG1 Gene

mRNA/cDNA for BHMG1 Gene

(4) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BHMG1 Gene

No ASD Table

Relevant External Links for BHMG1 Gene

GeneLoc Exon Structure for
BHMG1
ECgene alternative splicing isoforms for
BHMG1

Expression for BHMG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BHMG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of BHMG1 Gene:

BHMG1
genes like me logo Genes that share expression patterns with BHMG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BHMG1 Gene

Orthologs for BHMG1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BHMG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 34
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm4969 34
  • 46 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:ch211-191j22.7 34
  • 22 (a)
OneToOne
Species where no ortholog for BHMG1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BHMG1 Gene

ENSEMBL:
Gene Tree for BHMG1 (if available)
TreeFam:
Gene Tree for BHMG1 (if available)

Paralogs for BHMG1 Gene

No data available for Paralogs for BHMG1 Gene

Variants for BHMG1 Gene

Sequence variations from dbSNP and Humsavar for BHMG1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000000521 -- 45,731,355(+) TCTGT(-/CACCCAGG)CTGGA intron-variant, upstream-variant-2KB
rs1000172350 -- 45,757,593(+) TCAGC(A/T)CACTT intron-variant
rs1000267109 -- 45,756,171(+) ACGTC(C/T)TCTGC intron-variant
rs1000324526 -- 45,744,195(+) TTGTA(C/T)TTTTA intron-variant
rs1000328690 -- 45,737,524(+) GCAGT(A/G)ACACG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BHMG1 Gene

Variant ID Type Subtype PubMed ID
esv2663012 CNV deletion 23128226
esv987735 CNV deletion 20482838
nsv579870 CNV loss 21841781

Relevant External Links for BHMG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BHMG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BHMG1 Gene

Disorders for BHMG1 Gene

Relevant External Links for BHMG1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BHMG1

No disorders were found for BHMG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BHMG1 Gene

Publications for BHMG1 Gene

  1. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. (PMID: 23044541) Gascoigne DK … Mattick JS (Bioinformatics (Oxford, England) 2012) 2 3 60
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4 60

Products for BHMG1 Gene

Sources for BHMG1 Gene

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