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Aliases for BHLHE40-AS1 Gene

Subcategory (RNA class) for BHLHE40-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for BHLHE40-AS1 Gene

  • BHLHE40 Antisense RNA 1 2 3 5

External Ids for BHLHE40-AS1 Gene

Summaries for BHLHE40-AS1 Gene

GeneCards Summary for BHLHE40-AS1 Gene

BHLHE40-AS1 (BHLHE40 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BHLHE40-AS1 Gene

Genomics for BHLHE40-AS1 Gene

Regulatory Elements for BHLHE40-AS1 Gene

Enhancers for BHLHE40-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F004717 1.7 FANTOM5 Ensembl ENCODE 12 +258.6 258605 6.9 HDGF PKNOX1 ATF1 ARNT MLX ARID4B SIN3A ZNF48 YY1 ZNF766 ARL8B BHLHE40 EGOT BHLHE40-AS1 ENSG00000235978 EDEM1 ENSG00000275981 LOC105376933
GH03F005002 1.7 FANTOM5 Ensembl ENCODE 11.9 -22.7 -22740 1.4 PKNOX1 ATF1 CREB3L1 CBX5 ELK1 GATA2 KDM4B NCOA1 TSHZ1 REST BHLHE40 BHLHE40-AS1 ENSG00000235978 ARL8B EDEM1 LOC105376934
GH03F005051 1.5 FANTOM5 Ensembl ENCODE 12.2 -75.3 -75335 7.9 HDGF ATF1 PKNOX1 WRNIP1 YBX1 ZNF121 GATA2 ZNF207 ZMIZ1 ZNF263 BHLHE40 BHLHE40-AS1 ENSG00000235978 EGOT ARL8B EDEM1 GC03M005068 LOC105376934
GH03F004833 1.3 FANTOM5 ENCODE 12 +145.3 145265 2.8 HDGF PKNOX1 ATF1 TBL1XR1 BMI1 FEZF1 RAD21 ZBTB40 SCRT2 ETV6 BHLHE40 BHLHE40-AS1 ENSG00000235978 EDEM1 EGOT
GH03F004711 1.2 Ensembl ENCODE 12.1 +266.9 266934 3.5 ELF3 HDGF PKNOX1 YBX1 ZBTB40 ZNF2 RAD21 ZNF48 ZNF121 ZNF143 BHLHE40 BHLHE40-AS1 EGOT ENSG00000235978 ENSG00000275981 LOC105376933
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BHLHE40-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for BHLHE40-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001844712 61 5801 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21

Genomic Location for BHLHE40-AS1 Gene

4,896,809 bp from pter
4,979,961 bp from pter
83,153 bases
Minus strand

Genomic View for BHLHE40-AS1 Gene

Genes around BHLHE40-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BHLHE40-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BHLHE40-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BHLHE40-AS1 Gene

Proteins for BHLHE40-AS1 Gene

Post-translational modifications for BHLHE40-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BHLHE40-AS1 Gene

Domains & Families for BHLHE40-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BHLHE40-AS1 Gene

Function for BHLHE40-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BHLHE40-AS1 Gene

Localization for BHLHE40-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BHLHE40-AS1 Gene

Pathways & Interactions for BHLHE40-AS1 Gene

SuperPathways for BHLHE40-AS1 Gene

No Data Available

Interacting Proteins for BHLHE40-AS1 Gene

Gene Ontology (GO) - Biological Process for BHLHE40-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for BHLHE40-AS1 Gene

Transcripts for BHLHE40-AS1 Gene

mRNA/cDNA for BHLHE40-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BHLHE40-AS1 Gene

BHLHE40 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BHLHE40-AS1 Gene

No ASD Table

Relevant External Links for BHLHE40-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BHLHE40-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BHLHE40-AS1 Gene

SOURCE GeneReport for Unigene cluster for BHLHE40-AS1 Gene:

genes like me logo Genes that share expression patterns with BHLHE40-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BHLHE40-AS1 Gene

Orthologs for BHLHE40-AS1 Gene

Evolution for BHLHE40-AS1 Gene

Gene Tree for BHLHE40-AS1 (if available)
Gene Tree for BHLHE40-AS1 (if available)

No data available for Orthologs for BHLHE40-AS1 Gene

Paralogs for BHLHE40-AS1 Gene

No data available for Paralogs for BHLHE40-AS1 Gene

Variants for BHLHE40-AS1 Gene

Sequence variations from dbSNP and Humsavar for BHLHE40-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10049045 -- 4,927,328(+) ACAAA(A/C)AAAAA intron-variant
rs10049082 -- 4,927,702(+) GTTAC(C/T)ACAGG intron-variant
rs10049139 -- 4,964,337(+) tgtct(A/T)aaaaa intron-variant
rs10440149 -- 4,971,088(+) aagtg(G/T)gcgaa intron-variant
rs10510299 -- 4,952,463(+) AGTCC(A/G)GTTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BHLHE40-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834606 CNV loss 17160897
nsv589457 CNV gain 21841781
nsv517888 CNV loss 19592680
nsv516673 CNV gain 19592680
nsv507080 OTHER sequence alteration 20534489
nsv470010 CNV gain 18288195
nsv460360 CNV gain 19166990
nsv1126641 CNV deletion 24896259
nsv1073199 CNV deletion 25765185
nsv1005718 CNV gain 25217958
esv3893643 CNV loss 25118596
esv3595115 CNV loss 21293372
esv3568592 CNV loss 25503493
esv3372544 CNV insertion 20981092
esv3305144 CNV mobile element insertion 20981092
esv23882 CNV gain 19812545

Relevant External Links for BHLHE40-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BHLHE40-AS1 Gene

Disorders for BHLHE40-AS1 Gene

Relevant External Links for BHLHE40-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for BHLHE40-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BHLHE40-AS1 Gene

Publications for BHLHE40-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for BHLHE40-AS1 Gene

Sources for BHLHE40-AS1 Gene

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