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Aliases for BHLHE40-AS1 Gene

Subcategory (RNA class) for BHLHE40-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BHLHE40-AS1 Gene

  • BHLHE40 Antisense RNA 1 2 3 5

External Ids for BHLHE40-AS1 Gene

Summaries for BHLHE40-AS1 Gene

GeneCards Summary for BHLHE40-AS1 Gene

BHLHE40-AS1 (BHLHE40 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BHLHE40-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BHLHE40-AS1 Gene

Genomics for BHLHE40-AS1 Gene

Regulatory Elements for BHLHE40-AS1 Gene

Enhancers for BHLHE40-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H004717 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12 +259.2 259205 5 FOXA2 ATF1 MLX ARNT ARID4B YBX1 YY1 GATA2 ZNF143 FOS ARL8B BHLHE40 EGOT BHLHE40-AS1 ENSG00000235978 EDEM1 ENSG00000275981 LOC105376933
GH03H004833 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12 +145.3 145265 2 HDGF PKNOX1 ATF1 TBL1XR1 BMI1 FEZF1 ZBTB40 BATF ZNF766 SCRT2 BHLHE40 BHLHE40-AS1 ENSG00000235978 EDEM1 EGOT
GH03H005051 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -74.0 -74025 5 HDGF PKNOX1 RB1 ARNT NFXL1 YBX1 BATF GATA2 ZNF207 ATF7 BHLHE40 BHLHE40-AS1 ENSG00000235978 EGOT ARL8B EDEM1 GC03M005068 LOC105376934
GH03H005002 1.7 FANTOM5 ENCODE dbSUPER 11.9 -22.7 -22740 1 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 CBX5 GATA2 ELK1 ATF7 BHLHE40 BHLHE40-AS1 ENSG00000235978 ARL8B EDEM1 LOC105376934
GH03H004711 1.3 Ensembl ENCODE dbSUPER 12.1 +266.9 266934 3 ELF3 CTCF ESRRA RB1 ARNT CEBPG ZNF2 RAD21 RFX5 IRF9 BHLHE40-AS1 BHLHE40 EGOT ENSG00000235978 ENSG00000275981 LOC105376933
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BHLHE40-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BHLHE40-AS1 Gene

Chromosome:
3
Start:
4,896,809 bp from pter
End:
4,979,961 bp from pter
Size:
83,153 bases
Orientation:
Minus strand

Genomic View for BHLHE40-AS1 Gene

Genes around BHLHE40-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BHLHE40-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BHLHE40-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BHLHE40-AS1 Gene

Proteins for BHLHE40-AS1 Gene

Post-translational modifications for BHLHE40-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BHLHE40-AS1 Gene

Domains & Families for BHLHE40-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BHLHE40-AS1 Gene

Function for BHLHE40-AS1 Gene

Phenotypes From GWAS Catalog for BHLHE40-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BHLHE40-AS1 Gene

Localization for BHLHE40-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BHLHE40-AS1 Gene

Pathways & Interactions for BHLHE40-AS1 Gene

SuperPathways for BHLHE40-AS1 Gene

No Data Available

Interacting Proteins for BHLHE40-AS1 Gene

Gene Ontology (GO) - Biological Process for BHLHE40-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BHLHE40-AS1 Gene

Drugs & Compounds for BHLHE40-AS1 Gene

No Compound Related Data Available

Transcripts for BHLHE40-AS1 Gene

mRNA/cDNA for BHLHE40-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BHLHE40-AS1 Gene

BHLHE40 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BHLHE40-AS1 Gene

No ASD Table

Relevant External Links for BHLHE40-AS1 Gene

GeneLoc Exon Structure for
BHLHE40-AS1
ECgene alternative splicing isoforms for
BHLHE40-AS1

Expression for BHLHE40-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BHLHE40-AS1 Gene

SOURCE GeneReport for Unigene cluster for BHLHE40-AS1 Gene:

Hs.434505
genes like me logo Genes that share expression patterns with BHLHE40-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BHLHE40-AS1 Gene

Orthologs for BHLHE40-AS1 Gene

Evolution for BHLHE40-AS1 Gene

ENSEMBL:
Gene Tree for BHLHE40-AS1 (if available)
TreeFam:
Gene Tree for BHLHE40-AS1 (if available)

No data available for Orthologs for BHLHE40-AS1 Gene

Paralogs for BHLHE40-AS1 Gene

No data available for Paralogs for BHLHE40-AS1 Gene

Variants for BHLHE40-AS1 Gene

Sequence variations from dbSNP and Humsavar for BHLHE40-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000038262 -- 4,977,472(+) ACCCC(A/G)TTTTT intron-variant, upstream-variant-2KB
rs1000038789 -- 4,938,412(+) GCCAT(C/G)TAGGG intron-variant
rs1000057267 -- 4,972,183(+) AGAAG(A/G)GGTTT intron-variant
rs1000070841 -- 4,977,706(+) TGTTT(C/T)CCCTG intron-variant, upstream-variant-2KB
rs1000078681 -- 4,974,578(+) CTTTC(C/T)GGGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BHLHE40-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23882 CNV gain 19812545
esv3305144 CNV mobile element insertion 20981092
esv3372544 CNV insertion 20981092
esv3568592 CNV loss 25503493
esv3595115 CNV loss 21293372
esv3893643 CNV loss 25118596
nsv1005718 CNV gain 25217958
nsv1073199 CNV deletion 25765185
nsv1126641 CNV deletion 24896259
nsv460360 CNV gain 19166990
nsv470010 CNV gain 18288195
nsv507080 OTHER sequence alteration 20534489
nsv516673 CNV gain 19592680
nsv517888 CNV loss 19592680
nsv589457 CNV gain 21841781
nsv834606 CNV loss 17160897

Relevant External Links for BHLHE40-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BHLHE40-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BHLHE40-AS1 Gene

Disorders for BHLHE40-AS1 Gene

Relevant External Links for BHLHE40-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BHLHE40-AS1

No disorders were found for BHLHE40-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BHLHE40-AS1 Gene

Publications for BHLHE40-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for BHLHE40-AS1 Gene

Sources for BHLHE40-AS1 Gene

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