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Aliases for BGN Gene

Aliases for BGN Gene

  • Biglycan 2 3 3 5
  • SLRR1A 3 4
  • PG-S1 3 4
  • Dermatan Sulphate Proteoglycan I 3
  • Bone/Cartilage Proteoglycan-I 3
  • Small Leucine-Rich Protein 1A 3
  • Bone/Cartilage Proteoglycan I 4
  • Biglycan Proteoglycan 2
  • DSPG1 3
  • SEMDX 3
  • MRLS 3
  • PGI 3

External Ids for BGN Gene

Previous GeneCards Identifiers for BGN Gene

  • GC0XP146898
  • GC0XP149215
  • GC0XP150346
  • GC0XP151228
  • GC0XP152285
  • GC0XP152413
  • GC0XP152762
  • GC0XP141428

Summaries for BGN Gene

Entrez Gene Summary for BGN Gene

  • This gene encodes a member of the small leucine-rich proteoglycan (SLRP) family of proteins. The encoded preproprotein is proteolytically processed to generate the mature protein, which plays a role in bone growth, muscle development and regeneration, and collagen fibril assembly in multiple tissues. This protein may also regulate inflammation and innate immunity. Additionally, the encoded protein may contribute to atherosclerosis and aortic valve stenosis in human patients. This gene and the related gene decorin are thought to be the result of a gene duplication. [provided by RefSeq, Nov 2015]

GeneCards Summary for BGN Gene

BGN (Biglycan) is a Protein Coding gene. Diseases associated with BGN include Spondyloepimetaphyseal Dysplasia, X-Linked and Thoracic Aortic Aneurysms And Aortic Dissections. Among its related pathways are Chondroitin sulfate/dermatan sulfate metabolism and Glycosaminoglycan metabolism. GO annotations related to this gene include extracellular matrix structural constituent and extracellular matrix binding. An important paralog of this gene is DCN.

UniProtKB/Swiss-Prot for BGN Gene

  • May be involved in collagen fiber assembly.

Gene Wiki entry for BGN Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BGN Gene

Genomics for BGN Gene

Regulatory Elements for BGN Gene

Enhancers for BGN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG153491 1.1 Ensembl ENCODE dbSUPER 0.7 -3.0 -2965 1.5 CTCF ZNF341 BHLHE40 BCL6 RAD21 ZIC2 HNRNPL HAUS7 BGN LOC105373381
GH0XG153493 0.9 ENCODE dbSUPER 0.7 +0.3 258 3.0 ZNF263 CTCF NFIB NRF1 ARID4B REST ZIC2 RAD21 GLIS2 POLR2A HAUS7 TREX2 BGN
GH0XG153487 1.3 Ensembl ENCODE dbSUPER 0.4 -6.5 -6474 2.4 ELF3 MLX ARID4B RARA GATA2 PCBP1 CREM EGR2 HMG20B PPARG BGN LOC105373381
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BGN on UCSC Golden Path with GeneCards custom track

Promoters for BGN Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000249550 711 1601 ZNF263 CTCF NFIB NRF1 REST ZIC2 RAD21 GLIS2 POLR2A GLIS1

Genomic Location for BGN Gene

Chromosome:
X
Start:
153,494,889 bp from pter
End:
153,509,554 bp from pter
Size:
14,666 bases
Orientation:
Plus strand

Genomic View for BGN Gene

Genes around BGN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BGN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BGN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BGN Gene

Proteins for BGN Gene

  • Protein details for BGN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P21810-PGS1_HUMAN
    Recommended name:
    Biglycan
    Protein Accession:
    P21810
    Secondary Accessions:
    • D3DWU3
    • P13247

    Protein attributes for BGN Gene

    Size:
    368 amino acids
    Molecular mass:
    41654 Da
    Quaternary structure:
    • Homodimer. Forms a ternary complex with MFAP2 and ELN (By similarity).

neXtProt entry for BGN Gene

Post-translational modifications for BGN Gene

  • The two attached glycosaminoglycan chains can be either chondroitin sulfate or dermatan sulfate.
  • Glycosylation at Ser42, posLast=4747, posLast=180180, posLast=198198, Asn270, and posLast=311311
  • Modification sites at PhosphoSitePlus

Other Protein References for BGN Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for BGN Gene

Domains & Families for BGN Gene

Gene Families for BGN Gene

Suggested Antigen Peptide Sequences for BGN Gene

Graphical View of Domain Structure for InterPro Entry

P21810

UniProtKB/Swiss-Prot:

PGS1_HUMAN :
  • Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
Family:
  • Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
genes like me logo Genes that share domains with BGN: view

Function for BGN Gene

Molecular function for BGN Gene

GENATLAS Biochemistry:
biglycan (small interstitial proteoglycan),leucine-rich repeat (LRR) family
UniProtKB/Swiss-Prot Function:
May be involved in collagen fiber assembly.

Gene Ontology (GO) - Molecular Function for BGN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004860 protein kinase inhibitor activity IBA --
GO:0005201 extracellular matrix structural constituent NAS 1860845
GO:0005539 glycosaminoglycan binding IEA --
GO:0050840 extracellular matrix binding IEA --
genes like me logo Genes that share ontologies with BGN: view
genes like me logo Genes that share phenotypes with BGN: view

Human Phenotype Ontology for BGN Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for BGN Gene

MGI Knock Outs for BGN:

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for BGN Gene

Localization for BGN Gene

Subcellular locations from UniProtKB/Swiss-Prot for BGN Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BGN gene
Compartment Confidence
extracellular 5
lysosome 4
golgi apparatus 4
plasma membrane 3
cytoskeleton 2
mitochondrion 2
peroxisome 1
nucleus 1

Gene Ontology (GO) - Cellular Components for BGN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005578 proteinaceous extracellular matrix NAS 1860845
GO:0005615 extracellular space IEA --
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with BGN: view

Pathways & Interactions for BGN Gene

genes like me logo Genes that share pathways with BGN: view

Gene Ontology (GO) - Biological Process for BGN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001974 blood vessel remodeling IEA --
GO:0006469 negative regulation of protein kinase activity IBA --
GO:0008150 biological_process ND --
GO:0019221 cytokine-mediated signaling pathway IBA --
GO:0019800 peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan IEA --
genes like me logo Genes that share ontologies with BGN: view

No data available for SIGNOR curated interactions for BGN Gene

Drugs & Compounds for BGN Gene

(3) Drugs for BGN Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with BGN: view

Transcripts for BGN Gene

Unigene Clusters for BGN Gene

Biglycan:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BGN Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11a · 11b · 11c ^
SP1: -
SP2: - - -
SP3: - - - - - -
SP4: - - - - -
SP5: -
SP6:
SP7: - - - - - - - - - - - - - -
SP8: - - - - - - - - - -
SP9: -
SP10: - -
SP11: - - - - - - -

ExUns: 12a · 12b · 12c · 12d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11: -

Relevant External Links for BGN Gene

GeneLoc Exon Structure for
BGN
ECgene alternative splicing isoforms for
BGN

Expression for BGN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BGN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BGN Gene

This gene is overexpressed in Artery - Aorta (x14.8), Artery - Coronary (x8.7), and Artery - Tibial (x6.3).

Protein differential expression in normal tissues from HIPED for BGN Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (16.0), Breast (10.1), Skin (7.9), Spinal cord (7.8), and Gallbladder (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for BGN Gene



Protein tissue co-expression partners for BGN Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of BGN Gene:

BGN

SOURCE GeneReport for Unigene cluster for BGN Gene:

Hs.821

mRNA Expression by UniProt/SwissProt for BGN Gene:

P21810-PGS1_HUMAN
Tissue specificity: Found in several connective tissues, especially in articular cartilages.

Evidence on tissue expression from TISSUES for BGN Gene

  • Nervous system(5)
  • Spleen(4.9)
  • Bone(4.8)
  • Skin(4.8)
  • Lung(4.7)
  • Kidney(4.6)
  • Liver(4.6)
  • Heart(3.4)
  • Intestine(3.4)
  • Muscle(3.3)
  • Pancreas(3.2)
  • Eye(2.3)
  • Gall bladder(2.3)
genes like me logo Genes that share expression patterns with BGN: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for BGN Gene

Orthologs for BGN Gene

This gene was present in the common ancestor of chordates.

Orthologs for BGN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BGN 34 35
  • 99.01 (n)
dog
(Canis familiaris)
Mammalia BGN 34 35
  • 91.85 (n)
cow
(Bos Taurus)
Mammalia BGN 34 35
  • 90.85 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 89 (a)
OneToMany
-- 35
  • 89 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Bgn 34 16 35
  • 88.59 (n)
rat
(Rattus norvegicus)
Mammalia Bgn 34
  • 88.59 (n)
lizard
(Anolis carolinensis)
Reptilia BGN 35
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bgn 34
  • 70.38 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.939 34
zebrafish
(Danio rerio)
Actinopterygii bgnb 34 35
  • 69.66 (n)
bgna 35
  • 66 (a)
OneToMany
Dr.16232 34
Species where no ortholog for BGN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BGN Gene

ENSEMBL:
Gene Tree for BGN (if available)
TreeFam:
Gene Tree for BGN (if available)

Paralogs for BGN Gene

Paralogs for BGN Gene

(5) SIMAP similar genes for BGN Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with BGN: view

Variants for BGN Gene

Sequence variations from dbSNP and Humsavar for BGN Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
VAR_036605 A breast cancer sample
VAR_036606 A breast cancer sample
VAR_076590 Spondyloepimetaphyseal dysplasia, X-linked (SEMDX) [MIM:300106]
VAR_076591 Spondyloepimetaphyseal dysplasia, X-linked (SEMDX) [MIM:300106]
VAR_078028 Meester-Loeys syndrome (MRLS) [MIM:300989]

Structural Variations from Database of Genomic Variants (DGV) for BGN Gene

Variant ID Type Subtype PubMed ID
esv33199 CNV gain+loss 17666407
nsv522600 CNV gain 19592680

Variation tolerance for BGN Gene

Residual Variation Intolerance Score: 17.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.70; 32.33% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BGN Gene

Human Gene Mutation Database (HGMD)
BGN
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BGN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BGN Gene

Disorders for BGN Gene

MalaCards: The human disease database

(10) MalaCards diseases for BGN Gene - From: ClinVar, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
spondyloepimetaphyseal dysplasia, x-linked
  • spondyloepimetaphyseal dysplasia x-linked
thoracic aortic aneurysms and aortic dissections
  • taad
renal artery atheroma
  • atherosclerosis of renal artery
spondyloepimetaphyseal dysplasia
  • spondyloepimetaphyseal dysplasia, matrilin-3 related
exposure keratitis
  • exposure keratoconjunctivitis
- elite association - COSMIC cancer census association via MalaCards
Search BGN in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

PGS1_HUMAN
  • Spondyloepimetaphyseal dysplasia, X-linked (SEMDX) [MIM:300106]: A X-linked recessive bone disease characterized by severe short-trunk dwarfism, brachydactyly, metaphyseal flaring of lower extremities, short and broad long bone diaphyses, moderate platyspondyly, normal facies, and normal intelligence. {ECO:0000269 PubMed:27236923}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for BGN

Genetic Association Database (GAD)
BGN
Human Genome Epidemiology (HuGE) Navigator
BGN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BGN
genes like me logo Genes that share disorders with BGN: view

No data available for Genatlas for BGN Gene

Publications for BGN Gene

  1. BGN Mutations in X-Linked Spondyloepimetaphyseal Dysplasia. (PMID: 27236923) Cho S.Y. … Jin D.K. (Am. J. Hum. Genet. 2016) 3 4 64
  2. High-density association study of 383 candidate genes for volumetric BMD at the femoral neck and lumbar spine among older men. (PMID: 19453261) Yerges L.M. … Zmuda J.M. (J. Bone Miner. Res. 2009) 3 46 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Regulation of biglycan gene expression by transforming growth factor-beta requires MKK6-p38 mitogen-activated protein Kinase signaling downstream of Smad signaling. (PMID: 12538652) Ungefroren H. … Kalthoff H. (J. Biol. Chem. 2003) 3 22 64
  5. Smad4/DPC4-dependent regulation of biglycan gene expression by transforming growth factor-beta in pancreatic tumor cells. (PMID: 12140283) Chen W.B. … Ungefroren H. (J. Biol. Chem. 2002) 3 22 64

Products for BGN Gene

Sources for BGN Gene

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