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Aliases for BFSP2-AS1 Gene

Subcategory (RNA class) for BFSP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BFSP2-AS1 Gene

  • BFSP2 Antisense RNA 1 2 3 5

External Ids for BFSP2-AS1 Gene

Previous GeneCards Identifiers for BFSP2-AS1 Gene

  • GC03M133149

Summaries for BFSP2-AS1 Gene

GeneCards Summary for BFSP2-AS1 Gene

BFSP2-AS1 (BFSP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BFSP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BFSP2-AS1 Gene

Genomics for BFSP2-AS1 Gene

Regulatory Elements for BFSP2-AS1 Gene

Enhancers for BFSP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H133505 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -50.3 -50298 1 HDGF PKNOX1 FOXA2 TBL1XR1 RAD21 RARA RFX5 ZNF143 ZNF207 ATF7 BFSP2-AS1 CDV3 GC03P133492 ENSG00000272832
GH03H133499 1.4 FANTOM5 ENCODE dbSUPER 11.9 -43.2 -43185 0 ELF3 FOXA2 ARID4B THRB ZSCAN9 RARA CREM THAP11 SP5 MXD4 ENSG00000250983 ENSG00000201827 BFSP2-AS1 GC03P133492 ENSG00000272832
GH03H133479 1.3 Ensembl ENCODE dbSUPER 12 -23.9 -23919 1 HDGF PKNOX1 FEZF1 ZIC2 RFX5 POLR2A EED PRDM10 RUNX3 KLF8 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 BFSP2 GC03P133482 GC03P133475 GC03P133476
GH03H133473 1.3 Ensembl ENCODE dbSUPER 12 -20.3 -20264 5 PKNOX1 TBL1XR1 BATF ATF7 ETV6 RUNX3 IKZF2 CREM CBFB JUNB BFSP2 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 GC03P133476 GC03P133475 GC03P133482
GH03H133488 1.3 Ensembl ENCODE dbSUPER 11.7 -34.9 -34876 4 SIX4 PKNOX1 TBL1XR1 BATF RELA RFX5 GATA3 ZNF157 POLR2A EED CDV3 BFSP2-AS1 TOPBP1 TFP1 BFSP2 GC03P133492 ENSG00000272832
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BFSP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BFSP2-AS1 Gene

Chromosome:
3
Start:
133,429,269 bp from pter
End:
133,456,237 bp from pter
Size:
26,969 bases
Orientation:
Minus strand

Genomic View for BFSP2-AS1 Gene

Genes around BFSP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BFSP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BFSP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BFSP2-AS1 Gene

Proteins for BFSP2-AS1 Gene

Post-translational modifications for BFSP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BFSP2-AS1 Gene

Domains & Families for BFSP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BFSP2-AS1 Gene

Function for BFSP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BFSP2-AS1 Gene

Localization for BFSP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BFSP2-AS1 Gene

Pathways & Interactions for BFSP2-AS1 Gene

SuperPathways for BFSP2-AS1 Gene

No Data Available

Interacting Proteins for BFSP2-AS1 Gene

Gene Ontology (GO) - Biological Process for BFSP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BFSP2-AS1 Gene

Drugs & Compounds for BFSP2-AS1 Gene

No Compound Related Data Available

Transcripts for BFSP2-AS1 Gene

mRNA/cDNA for BFSP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BFSP2-AS1 Gene

No ASD Table

Relevant External Links for BFSP2-AS1 Gene

GeneLoc Exon Structure for
BFSP2-AS1
ECgene alternative splicing isoforms for
BFSP2-AS1

Expression for BFSP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BFSP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BFSP2-AS1 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x11.9).
genes like me logo Genes that share expression patterns with BFSP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BFSP2-AS1 Gene

Orthologs for BFSP2-AS1 Gene

Evolution for BFSP2-AS1 Gene

ENSEMBL:
Gene Tree for BFSP2-AS1 (if available)
TreeFam:
Gene Tree for BFSP2-AS1 (if available)

No data available for Orthologs for BFSP2-AS1 Gene

Paralogs for BFSP2-AS1 Gene

No data available for Paralogs for BFSP2-AS1 Gene

Variants for BFSP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for BFSP2-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs104893685 Pathogenic 133,450,432(+) AGAAC(A/C/T)GGGTG intron-variant, reference, synonymous-codon
rs121908938 Pathogenic 133,448,613(+) AAGAA(-/GAA)CTTGG intron-variant, cds-indel
rs150374124 Likely benign 133,475,181(+) TCCTT(A/C/T)AAATA intron-variant, utr-variant-3-prime
rs537979573 Likely benign 133,475,045(+) AGGAG(C/T)TTTCT intron-variant, utr-variant-3-prime
rs540920442 Likely benign 133,475,131(+) CCTTC(G/T)GCTTT intron-variant, utr-variant-3-prime

Relevant External Links for BFSP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BFSP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BFSP2-AS1 Gene

Disorders for BFSP2-AS1 Gene

Relevant External Links for BFSP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BFSP2-AS1

No disorders were found for BFSP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BFSP2-AS1 Gene

Publications for BFSP2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60

Products for BFSP2-AS1 Gene

Sources for BFSP2-AS1 Gene

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