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Aliases for BFSP2-AS1 Gene

Subcategory (RNA class) for BFSP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BFSP2-AS1 Gene

  • BFSP2 Antisense RNA 1 2 3 5

External Ids for BFSP2-AS1 Gene

Previous GeneCards Identifiers for BFSP2-AS1 Gene

  • GC03M133149

Summaries for BFSP2-AS1 Gene

GeneCards Summary for BFSP2-AS1 Gene

BFSP2-AS1 (BFSP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BFSP2-AS1 Gene

Genomics for BFSP2-AS1 Gene

Regulatory Elements for BFSP2-AS1 Gene

Enhancers for BFSP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F133473 1 Ensembl ENCODE 12 -20.3 -20264 5.5 PKNOX1 TBL1XR1 ZBTB40 CBX5 ETV6 CREM JUNB TBX21 SP1 RAD51 BFSP2 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 GC03P133475 GC03P133476 GC03P133482
GH03F133479 1 Ensembl ENCODE 12 -23.9 -23919 1.2 HDGF TBP PKNOX1 TEAD4 FEZF1 ZIC2 CBX5 POLR2A EED PRDM10 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 BFSP2 GC03P133482 GC03P133475 GC03P133476
GH03F133499 0.9 FANTOM5 ENCODE 11.9 -43.2 -43185 0.2 ELF3 ARID4B THRB ZSCAN9 RARA CREM THAP11 SP5 MXD4 MIER2 ENSG00000250983 ENSG00000201827 BFSP2-AS1 GC03P133492 ENSG00000272832
GH03F133488 0.8 Ensembl ENCODE 11.7 -34.9 -34876 4.9 PKNOX1 TBL1XR1 BMI1 RAD21 RFX5 EGR1 ETV6 FOS CREM EGR2 CDV3 BFSP2-AS1 TOPBP1 TFP1 BFSP2 GC03P133492 ENSG00000272832
GH03F133489 0.8 ENCODE 11.7 -31.9 -31924 0.1 CTCF RFX1 SMC3 RAD21 BFSP2-AS1 BFSP2 LOC391578 GC03P133482
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BFSP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BFSP2-AS1 Gene

Chromosome:
3
Start:
133,429,269 bp from pter
End:
133,456,237 bp from pter
Size:
26,969 bases
Orientation:
Minus strand

Genomic View for BFSP2-AS1 Gene

Genes around BFSP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BFSP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BFSP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BFSP2-AS1 Gene

Proteins for BFSP2-AS1 Gene

Post-translational modifications for BFSP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BFSP2-AS1 Gene

Domains & Families for BFSP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BFSP2-AS1 Gene

Function for BFSP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BFSP2-AS1 Gene

Localization for BFSP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BFSP2-AS1 Gene

Pathways & Interactions for BFSP2-AS1 Gene

SuperPathways for BFSP2-AS1 Gene

No Data Available

Interacting Proteins for BFSP2-AS1 Gene

Gene Ontology (GO) - Biological Process for BFSP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BFSP2-AS1 Gene

Transcripts for BFSP2-AS1 Gene

mRNA/cDNA for BFSP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BFSP2-AS1 Gene

No ASD Table

Relevant External Links for BFSP2-AS1 Gene

GeneLoc Exon Structure for
BFSP2-AS1
ECgene alternative splicing isoforms for
BFSP2-AS1

Expression for BFSP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BFSP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for BFSP2-AS1 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x11.9).
genes like me logo Genes that share expression patterns with BFSP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BFSP2-AS1 Gene

Orthologs for BFSP2-AS1 Gene

Evolution for BFSP2-AS1 Gene

ENSEMBL:
Gene Tree for BFSP2-AS1 (if available)
TreeFam:
Gene Tree for BFSP2-AS1 (if available)

No data available for Orthologs for BFSP2-AS1 Gene

Paralogs for BFSP2-AS1 Gene

No data available for Paralogs for BFSP2-AS1 Gene

Variants for BFSP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for BFSP2-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs104893685 Pathogenic 133,450,432(+) AGAAC(A/C/T)GGGTG intron-variant, reference, synonymous-codon, missense
rs121908938 Pathogenic 133,448,613(+) AAGAA(-/GAA)CTTGG intron-variant, cds-indel
rs190627417 Uncertain significance 133,450,434(+) AACCG(A/G/T)GTGGA intron-variant, reference, synonymous-codon
rs79087781 Benign 133,472,541(+) CCACG(A/C)CCTGC intron-variant, reference, missense
rs1047649 -- 133,426,486(-) ATTCT(C/G)TAAAA intron-variant, nc-transcript-variant

Relevant External Links for BFSP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BFSP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BFSP2-AS1 Gene

Disorders for BFSP2-AS1 Gene

Relevant External Links for BFSP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BFSP2-AS1

No disorders were found for BFSP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BFSP2-AS1 Gene

Publications for BFSP2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for BFSP2-AS1 Gene

Sources for BFSP2-AS1 Gene

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