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Aliases for BEND3P3 Gene

Subcategory (RNA class) for BEND3P3 Gene

lncRNA

Aliases for BEND3P3 Gene

  • BEN Domain Containing 3 Pseudogene 3 2 3 5

External Ids for BEND3P3 Gene

ORGUL Members for BEND3P3 Gene

Previous GeneCards Identifiers for BEND3P3 Gene

  • GC10P081443
  • GC10P081555
  • GC10P080038
  • GC10P080063
  • GC10P080087
  • GC10P080110
  • GC10P080135

Summaries for BEND3P3 Gene

GeneCards Summary for BEND3P3 Gene

BEND3P3 (BEN Domain Containing 3 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BEND3P3 Gene

Genomics for BEND3P3 Gene

Genomic Location for BEND3P3 Gene

Chromosome:
10
Start:
79,682,975 bp from pter
End:
79,688,897 bp from pter
Size:
5,923 bases
Orientation:
Plus strand

Genomic View for BEND3P3 Gene

Genes around BEND3P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BEND3P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BEND3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BEND3P3 Gene

No data available for Regulatory Elements for BEND3P3 Gene

Proteins for BEND3P3 Gene

Post-translational modifications for BEND3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BEND3P3 Gene

Domains & Families for BEND3P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BEND3P3 Gene

Function for BEND3P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BEND3P3 Gene

Localization for BEND3P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BEND3P3 Gene

Pathways & Interactions for BEND3P3 Gene

SuperPathways for BEND3P3 Gene

No Data Available

Interacting Proteins for BEND3P3 Gene

Gene Ontology (GO) - Biological Process for BEND3P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BEND3P3 Gene

Drugs & Compounds for BEND3P3 Gene

No Compound Related Data Available

Transcripts for BEND3P3 Gene

mRNA/cDNA for BEND3P3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BEND3P3 Gene

BEN domain containing 3 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BEND3P3 Gene

No ASD Table

Relevant External Links for BEND3P3 Gene

GeneLoc Exon Structure for
BEND3P3
ECgene alternative splicing isoforms for
BEND3P3

Expression for BEND3P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BEND3P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of BEND3P3 Gene:

BEND3P3

SOURCE GeneReport for Unigene cluster for BEND3P3 Gene:

Hs.730022
genes like me logo Genes that share expression patterns with BEND3P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BEND3P3 Gene

Orthologs for BEND3P3 Gene

Evolution for BEND3P3 Gene

ENSEMBL:
Gene Tree for BEND3P3 (if available)
TreeFam:
Gene Tree for BEND3P3 (if available)

No data available for Orthologs for BEND3P3 Gene

Paralogs for BEND3P3 Gene

No data available for Paralogs for BEND3P3 Gene

Variants for BEND3P3 Gene

Sequence variations from dbSNP and Humsavar for BEND3P3 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000867282 -- 79,685,875(+) AATCT(G/T)TTTAA nc-transcript-variant
rs1000940860 -- 79,682,329(+) ATCGG(C/T)ACAGA upstream-variant-2KB
rs1002146270 -- 79,684,920(+) AACAG(A/G)AACAG nc-transcript-variant
rs1002810796 -- 79,682,933(+) GCACT(A/C)CAGCC upstream-variant-2KB
rs1003174627 -- 79,684,212(+) GCTAC(A/G/T)GGGAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for BEND3P3 Gene

Variant ID Type Subtype PubMed ID
dgv255e212 CNV loss 25503493
esv2738707 CNV deletion 23290073
esv2738718 CNV deletion 23290073
esv3578984 CNV loss 25503493
esv3623921 CNV loss 21293372
nsv1141879 OTHER inversion 24896259
nsv436110 CNV deletion 17901297
nsv948085 CNV duplication 23825009

Relevant External Links for BEND3P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BEND3P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BEND3P3 Gene

Disorders for BEND3P3 Gene

Relevant External Links for BEND3P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BEND3P3

No disorders were found for BEND3P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BEND3P3 Gene

Publications for BEND3P3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for BEND3P3 Gene

Sources for BEND3P3 Gene

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