Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BEND3P3 Gene

Subcategory (RNA class) for BEND3P3 Gene

lncRNA

Aliases for BEND3P3 Gene

  • BEN Domain Containing 3 Pseudogene 3 2 3 5

External Ids for BEND3P3 Gene

ORGUL Members for BEND3P3 Gene

Previous GeneCards Identifiers for BEND3P3 Gene

  • GC10P081443
  • GC10P081555
  • GC10P080038
  • GC10P080063
  • GC10P080087
  • GC10P080110

Summaries for BEND3P3 Gene

GeneCards Summary for BEND3P3 Gene

BEND3P3 (BEN Domain Containing 3 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BEND3P3 Gene

Genomics for BEND3P3 Gene

Regulatory Elements for BEND3P3 Gene

Enhancers for BEND3P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F079487 1 Ensembl ENCODE 17.5 -194.7 -194650 2.2 ATF1 PKNOX1 ZFP64 RAD21 ZNF143 RCOR1 FOS ZMIZ1 CREM ZNF654 BEND3P3 MBL1P LOC642361 ENSG00000235705 TPRX1P1 LOC105378383
GH10F079482 0.9 Ensembl ENCODE 17.5 -199.3 -199267 2.4 ZNF263 PKNOX1 GFI1B KLF17 SIN3A ZIC2 NR2F2 ZFHX2 JUND ZNF341 BEND3P3 ENSG00000235426 ENSG00000235705 NUTM2B TPRX1P1 LOC105378383
GH10F079466 1.1 Ensembl ENCODE 17.2 -215.2 -215169 2.8 CBX3 ZNF2 RAD21 YY1 ZNF121 ZNF143 EGR2 ZNF362 ZNF654 CEBPB BEND3P3 ZCCHC24 ENSG00000235426 ENSG00000235705 LOC105378383 TPRX1P1
GH10F079509 0.9 Ensembl 14.7 -172.8 -172775 0.8 BEND3P3 ENSG00000235705 ENSG00000241317
GH10F079473 0.6 Ensembl 14.5 -209.8 -209775 0.4 SOX13 CEBPG RAD21 RARA YY1 CBX5 NR2F6 GATAD2A SOX5 RFX1 BEND3P3 ENSG00000235426 ZCCHC24 LOC642361 LOC105378383 TPRX1P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BEND3P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for BEND3P3 Gene

Chromosome:
10
Start:
79,682,975 bp from pter
End:
79,688,897 bp from pter
Size:
5,923 bases
Orientation:
Plus strand

Genomic View for BEND3P3 Gene

Genes around BEND3P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BEND3P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BEND3P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BEND3P3 Gene

Proteins for BEND3P3 Gene

Post-translational modifications for BEND3P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BEND3P3 Gene

Domains & Families for BEND3P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BEND3P3 Gene

Function for BEND3P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BEND3P3 Gene

Localization for BEND3P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BEND3P3 Gene

Pathways & Interactions for BEND3P3 Gene

SuperPathways for BEND3P3 Gene

No Data Available

Interacting Proteins for BEND3P3 Gene

Gene Ontology (GO) - Biological Process for BEND3P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BEND3P3 Gene

Transcripts for BEND3P3 Gene

mRNA/cDNA for BEND3P3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BEND3P3 Gene

BEN domain containing 3 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BEND3P3 Gene

No ASD Table

Relevant External Links for BEND3P3 Gene

GeneLoc Exon Structure for
BEND3P3
ECgene alternative splicing isoforms for
BEND3P3

Expression for BEND3P3 Gene

mRNA expression in normal human tissues for BEND3P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of BEND3P3 Gene:

BEND3P3

SOURCE GeneReport for Unigene cluster for BEND3P3 Gene:

Hs.730022
genes like me logo Genes that share expression patterns with BEND3P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BEND3P3 Gene

Orthologs for BEND3P3 Gene

Evolution for BEND3P3 Gene

ENSEMBL:
Gene Tree for BEND3P3 (if available)
TreeFam:
Gene Tree for BEND3P3 (if available)

No data available for Orthologs for BEND3P3 Gene

Paralogs for BEND3P3 Gene

No data available for Paralogs for BEND3P3 Gene

Variants for BEND3P3 Gene

Sequence variations from dbSNP and Humsavar for BEND3P3 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs112439802 -- 79,686,276(+) ATTTT(A/G)CTGAC nc-transcript-variant
rs113525847 -- 79,683,145(+) GCGTG(G/T)AGAGG nc-transcript-variant
rs11527457 -- 79,688,204(+) TGTTT(G/T)TTTTT nc-transcript-variant
rs137997880 -- 79,682,126(+) TACAC(C/T)ATTAG upstream-variant-2KB
rs138355748 -- 79,684,960(+) CCACG(C/T)GCTGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for BEND3P3 Gene

Variant ID Type Subtype PubMed ID
dgv255e212 CNV loss 25503493
esv2738707 CNV deletion 23290073
esv2738718 CNV deletion 23290073
esv3578984 CNV loss 25503493
esv3623921 CNV loss 21293372
nsv1141879 OTHER inversion 24896259
nsv436110 CNV deletion 17901297
nsv948085 CNV duplication 23825009

Relevant External Links for BEND3P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BEND3P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BEND3P3 Gene

Disorders for BEND3P3 Gene

Relevant External Links for BEND3P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BEND3P3

No disorders were found for BEND3P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BEND3P3 Gene

Publications for BEND3P3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for BEND3P3 Gene

Sources for BEND3P3 Gene

Content
Loading form....