Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BEAN1-AS1 Gene

Subcategory (RNA class) for BEAN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BEAN1-AS1 Gene

  • BEAN1 Antisense RNA 1 2 3 5
  • CTD-2258A20.5 3

External Ids for BEAN1-AS1 Gene

Summaries for BEAN1-AS1 Gene

GeneCards Summary for BEAN1-AS1 Gene

BEAN1-AS1 (BEAN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BEAN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BEAN1-AS1 Gene

Genomics for BEAN1-AS1 Gene

Regulatory Elements for BEAN1-AS1 Gene

Enhancers for BEAN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H066547 1.4 ENCODE dbSUPER 18.5 -69.8 -69821 6 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 NAE1 ZDHHC1 TK2 BEAN1 PLEKHG4 ENSG00000260465 BEAN1-AS1 E2F4 KIAA0895L CMTM2
GH16H066510 1.5 Ensembl ENCODE dbSUPER 17.1 -30.9 -30938 3 PKNOX1 FOXA2 ARID4B SIN3A TCF12 ELK1 FOS ATF7 SP5 REST BEAN1 TK2 BEAN1-AS1 CKLF-CMTM1 CKLF CMTM2 CES4A GC16M066512 ENSG00000260851
GH16H066541 0.4 dbSUPER 18.3 -61.5 -61473 2 SCRT2 BEAN1 BEAN1-AS1 CMTM2 TK2 ENSG00000261519 ENSG00000260851
GH16H066480 0.5 ENCODE 10 +0.5 535 1 ZFP64 FOS PAX8 KDM1A ZBTB20 BEAN1 BEAN1-AS1 PIR55464 GC16M066468
GH16H066476 0.5 ENCODE 7.4 +3.9 3921 1 BCOR PKNOX1 ZNF239 ZMYM3 EBF1 TK2 BEAN1-AS1 GC16M066468 PIR55464
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BEAN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BEAN1-AS1 Gene

Chromosome:
16
Start:
66,469,796 bp from pter
End:
66,481,230 bp from pter
Size:
11,435 bases
Orientation:
Minus strand

Genomic View for BEAN1-AS1 Gene

Genes around BEAN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BEAN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BEAN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BEAN1-AS1 Gene

Proteins for BEAN1-AS1 Gene

Post-translational modifications for BEAN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BEAN1-AS1 Gene

Domains & Families for BEAN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BEAN1-AS1 Gene

Function for BEAN1-AS1 Gene

Phenotypes From GWAS Catalog for BEAN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BEAN1-AS1 Gene

Localization for BEAN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BEAN1-AS1 Gene

Pathways & Interactions for BEAN1-AS1 Gene

SuperPathways for BEAN1-AS1 Gene

No Data Available

Interacting Proteins for BEAN1-AS1 Gene

Gene Ontology (GO) - Biological Process for BEAN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BEAN1-AS1 Gene

Drugs & Compounds for BEAN1-AS1 Gene

No Compound Related Data Available

Transcripts for BEAN1-AS1 Gene

mRNA/cDNA for BEAN1-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BEAN1-AS1 Gene

No ASD Table

Relevant External Links for BEAN1-AS1 Gene

GeneLoc Exon Structure for
BEAN1-AS1
ECgene alternative splicing isoforms for
BEAN1-AS1

Expression for BEAN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BEAN1-AS1 Gene

genes like me logo Genes that share expression patterns with BEAN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BEAN1-AS1 Gene

Orthologs for BEAN1-AS1 Gene

Evolution for BEAN1-AS1 Gene

ENSEMBL:
Gene Tree for BEAN1-AS1 (if available)
TreeFam:
Gene Tree for BEAN1-AS1 (if available)

No data available for Orthologs for BEAN1-AS1 Gene

Paralogs for BEAN1-AS1 Gene

No data available for Paralogs for BEAN1-AS1 Gene

Variants for BEAN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for BEAN1-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000424079 -- 66,472,856(+) CTCTA(A/C)AAAAA intron-variant
rs1000649923 -- 66,473,545(+) AAAGC(A/G)GCACC intron-variant
rs1000756109 -- 66,474,086(+) AGGTG(C/T)CCACA intron-variant, reference, missense
rs1001325719 -- 66,472,905(+) TAGTC(C/T)CAGCT intron-variant
rs1001544561 -- 66,473,168(+) AGAGA(G/T)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BEAN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833264 CNV gain 17160897

Relevant External Links for BEAN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BEAN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BEAN1-AS1 Gene

Disorders for BEAN1-AS1 Gene

Relevant External Links for BEAN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BEAN1-AS1

No disorders were found for BEAN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BEAN1-AS1 Gene

Publications for BEAN1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for BEAN1-AS1 Gene

Sources for BEAN1-AS1 Gene

Content
Loading form....