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Aliases for BDNF-AS Gene

Subcategory (RNA class) for BDNF-AS Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for BDNF-AS Gene

  • BDNF Antisense RNA 2 3
  • BDNF Antisense RNA 1 (Non-Protein Coding) 2 3
  • BDNF Opposite Strand (Non-Protein Coding) 2 3
  • BDNF Antisense RNA (Non-Protein Coding) 2 3
  • Brain-Derived Neurotrophic Factor Opposite Strand 3
  • Non-Protein Coding RNA 49 2
  • NCRNA00049 3
  • ANTI-BDNF 3
  • BDNF-AS1 3
  • BDNFOS 3
  • BDNF 3

External Ids for BDNF-AS Gene

ORGUL Members for BDNF-AS Gene

Previous HGNC Symbols for BDNF-AS Gene

  • BDNFOS

Summaries for BDNF-AS Gene

GeneCards Summary for BDNF-AS Gene

BDNF-AS (BDNF Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are MAPK signaling pathway and NF-KappaB Family Pathway.

fRNAdb sequence ontologies for BDNF-AS Gene - the ORGUL cluster for this gene includes several descriptions:

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for BDNF-AS Gene

Genomics for BDNF-AS Gene

Genomic Location for BDNF-AS Gene

Start:
27,506,838 bp from pter
End:
27,698,174 bp from pter
Size:
191,337 bases
Orientation:
Plus strand

Genomic View for BDNF-AS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BDNF-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BDNF-AS Gene

No data available for Regulatory Elements for BDNF-AS Gene

Proteins for BDNF-AS Gene

Post-translational modifications for BDNF-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for BDNF-AS Gene

Domains for BDNF-AS Gene

Gene Families for BDNF-AS Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BDNF-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BDNF-AS Gene

Function for BDNF-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BDNF-AS Gene

Localization for BDNF-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BDNF-AS Gene

Pathways for BDNF-AS Gene

genes like me logo Genes that share pathways with BDNF-AS: view

Interacting Proteins for BDNF-AS Gene

Gene Ontology (GO) - Biological Process for BDNF-AS Gene

None

Compounds for BDNF-AS Gene

(1) PharmGKB related drug/compound annotations for BDNF-AS Gene

Drug/compound Annotation
antipsychotics CA
genes like me logo Genes that share compounds with BDNF-AS: view

Transcripts for BDNF-AS Gene

Unigene Clusters for BDNF-AS Gene

BDNF antisense RNA:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BDNF-AS

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for BDNF-AS
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BDNF-AS Gene

No ASD Table

Relevant External Links for BDNF-AS Gene

GeneLoc Exon Structure for
BDNF-AS
ECgene alternative splicing isoforms for
BDNF-AS

Expression for BDNF-AS Gene

mRNA expression in normal human tissues for BDNF-AS Gene

mRNA differential expression in normal tissues according to GTEx for BDNF-AS Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (4.6).

SOURCE GeneReport for Unigene cluster for BDNF-AS Gene Hs.675323

genes like me logo Genes that share expressions with BDNF-AS: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for BDNF-AS Gene

Orthologs for BDNF-AS Gene

Evolution for BDNF-AS Gene

ENSEMBL:
Gene Tree for BDNF-AS (if available)
TreeFam:
Gene Tree for BDNF-AS (if available)

No data available for Orthologs for BDNF-AS Gene

Paralogs for BDNF-AS Gene

No data available for Paralogs for BDNF-AS Gene

Variants for BDNF-AS Gene

Sequence variations from dbSNP and Humsavar for BDNF-AS Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs901925 -- 27,520,922(+) CTAGA(C/T)CTACA intron-variant
rs901926 -- 27,549,006(-) AGAGC(A/G)CCTGG intron-variant
rs925946 -- 27,645,655(+) AGTGA(G/T)TAAAG intron-variant
rs925947 -- 27,645,820(+) TTGGG(G/T)TAGAG intron-variant
rs972096 -- 27,530,835(+) CTCAG(C/T)ACTGA intron-variant

Relevant External Links for BDNF-AS Gene

HapMap Linkage Disequilibrium report
BDNF-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for BDNF-AS Gene

Disorders for BDNF-AS Gene

No disorders were found for BDNF-AS Gene.

No data available for UniProtKB/Swiss-Prot for BDNF-AS Gene

Publications for BDNF-AS Gene

  1. Human brain derived neurotrophic factor (BDNF) genes, splicing patterns, and assessments of associations with substance abuse and Parkinson's Disease. (PMID: 15666411) Liu Q.-R. … Uhl G.R. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2005) 2 3
  2. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. (PMID: 22446693) Modarresi F. … Wahlestedt C. (Nat. Biotechnol. 2012) 2 3
  3. Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. (PMID: 24861553) Wen W. … Tanaka T. (Hum. Mol. Genet. 2014) 3
  4. Dissecting the human BDNF locus: bidirectional transcription, complex splicing, and multiple promoters. (PMID: 17629449) Pruunsild P. … Timmusk T. (Genomics 2007) 3
  5. Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity. (PMID: 19079260) Thorleifsson G. … Stefansson K. (Nat. Genet. 2009) 3

Products for BDNF-AS Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate BDNF-AS
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for BDNF-AS
    • Block miRNA regulation of BDNF-AS using miScript Target Protectors

    Sources for BDNF-AS Gene

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