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Aliases for BDNF-AS Gene

Subcategory (RNA class) for BDNF-AS Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for BDNF-AS Gene

  • BDNF Antisense RNA 2 3 5
  • BDNF Antisense RNA 1 (Non-Protein Coding) 2 3
  • BDNF Opposite Strand (Non-Protein Coding) 2 3
  • BDNF Antisense RNA (Non-Protein Coding) 2 3
  • Brain-Derived Neurotrophic Factor Opposite Strand 3
  • Non-Protein Coding RNA 49 2
  • NCRNA00049 3
  • BDNF-AS1 3
  • BDNFOS 3
  • BDNF 3

External Ids for BDNF-AS Gene

Previous HGNC Symbols for BDNF-AS Gene


Summaries for BDNF-AS Gene

GeneCards Summary for BDNF-AS Gene

BDNF-AS (BDNF Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BDNF-AS include Substance Abuse.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BDNF-AS Gene

Genomics for BDNF-AS Gene

Regulatory Elements for BDNF-AS Gene

Enhancers for BDNF-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G027460 1.5 FANTOM5 Ensembl ENCODE 10.4 -46.3 -46341 1.8 ELF3 TBP FOXA2 ZFP64 ARID4B DMAP1 DNMT3B ZSCAN9 RAD21 RARA LIN7C BDNF-AS GC11P027468 GC11P027442
GH11G027447 1.1 ENCODE dbSUPER 14.1 -58.8 -58788 1.7 TBP PKNOX1 JUN DDX20 FEZF1 ZNF384 THRB DNMT3B TEAD3 ZNF766 BDNF-AS LIN7C LGR4 LOC105376671 GC11P027442 GC11P027468
GH11G027186 1 ENCODE 10.7 -318.5 -318474 3.6 FOXA2 PKNOX1 SIN3A FEZF1 ZNF2 TCF12 GLIS2 GATA2 KLF7 FOS LIN7C BDNF-AS LOC105376600 GC11P027127
GH11G027443 1 ENCODE dbSUPER 10.2 -62.2 -62204 2.5 SOX13 PKNOX1 TEAD4 ARID4B ZMYM3 RBBP5 CHD7 ZNF316 NR2F6 CREM LIN7C LGR4 LOC105376671 BDNF-AS GC11P027442 GC11P027468
GH11G027184 0.7 ENCODE 10.3 -322.7 -322700 0.2 GTF2F1 CTCF FOXA2 SIN3A RAD21 RFX5 ZSCAN5C ZNF143 SMC3 ZSCAN29 LGR4 LOC105376671 BDNF-AS LIN7C LOC105376600 GC11P027127
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BDNF-AS on UCSC Golden Path with GeneCards custom track

Promoters for BDNF-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for BDNF-AS Gene

27,506,838 bp from pter
27,698,174 bp from pter
191,337 bases
Plus strand

Genomic View for BDNF-AS Gene

Genes around BDNF-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BDNF-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BDNF-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BDNF-AS Gene

Proteins for BDNF-AS Gene

Post-translational modifications for BDNF-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for BDNF-AS Gene

Domains & Families for BDNF-AS Gene

Gene Families for BDNF-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BDNF-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BDNF-AS Gene

Function for BDNF-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BDNF-AS Gene

Localization for BDNF-AS Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BDNF-AS gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for BDNF-AS Gene

Pathways & Interactions for BDNF-AS Gene

SuperPathways for BDNF-AS Gene

No Data Available

Interacting Proteins for BDNF-AS Gene

Gene Ontology (GO) - Biological Process for BDNF-AS Gene


No data available for Pathways by source and SIGNOR curated interactions for BDNF-AS Gene

Drugs & Compounds for BDNF-AS Gene

(1) Drugs for BDNF-AS Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
antipsychotics Pharma 0
genes like me logo Genes that share compounds with BDNF-AS: view

Transcripts for BDNF-AS Gene

mRNA/cDNA for BDNF-AS Gene

(34) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BDNF-AS Gene

BDNF antisense RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BDNF-AS Gene

No ASD Table

Relevant External Links for BDNF-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BDNF-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BDNF-AS Gene

mRNA differential expression in normal tissues according to GTEx for BDNF-AS Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).

SOURCE GeneReport for Unigene cluster for BDNF-AS Gene:

genes like me logo Genes that share expression patterns with BDNF-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BDNF-AS Gene

Orthologs for BDNF-AS Gene

Evolution for BDNF-AS Gene

Gene Tree for BDNF-AS (if available)
Gene Tree for BDNF-AS (if available)

No data available for Orthologs for BDNF-AS Gene

Paralogs for BDNF-AS Gene

No data available for Paralogs for BDNF-AS Gene

Variants for BDNF-AS Gene

Sequence variations from dbSNP and Humsavar for BDNF-AS Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs8192466 Pathogenic 27,658,560(-) GATGA(A/C/T)CATCC intron-variant, reference, missense
rs2353512 Benign 27,658,115(-) ACGGC(A/G)GCAGA intron-variant, reference, synonymous-codon
rs6265 other 27,658,369(-) AACAC(A/G)TGATA nc-transcript-variant, reference, missense
rs1000008594 -- 27,623,536(+) GAAGG(C/T)GTCAC intron-variant
rs1000019582 -- 27,602,719(+) GGGTT(G/T)TTGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BDNF-AS Gene

Variant ID Type Subtype PubMed ID
dgv135e201 CNV deletion 23290073
dgv607n106 CNV deletion 24896259
esv1476336 CNV insertion 17803354
esv1745758 CNV deletion 17803354
esv2064689 CNV deletion 18987734
esv2672678 CNV deletion 23128226
esv2744288 CNV deletion 23290073
esv2744290 CNV deletion 23290073
esv2744292 CNV deletion 23290073
esv2744293 CNV deletion 23290073
esv2744294 CNV deletion 23290073
esv3258052 CNV deletion 24192839
esv3357461 CNV insertion 20981092
esv3454 CNV loss 18987735
esv3547509 CNV deletion 23714750
esv3625772 CNV loss 21293372
esv3625773 CNV loss 21293372
esv5866 CNV loss 19470904
nsv1076609 CNV deletion 25765185
nsv1141919 OTHER inversion 24896259
nsv474533 CNV novel sequence insertion 20440878
nsv819223 CNV gain 19587683
nsv832095 CNV gain 17160897
nsv957875 CNV insertion 24416366
nsv958620 CNV deletion 24416366
nsv971997 CNV duplication 23825009
nsv982998 CNV duplication 23825009

Relevant External Links for BDNF-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BDNF-AS Gene

Disorders for BDNF-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for BDNF-AS Gene - From: GeneCards

Disorder Aliases PubMed IDs
substance abuse
  • substance-related disorders
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for BDNF-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with BDNF-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BDNF-AS Gene

Publications for BDNF-AS Gene

  1. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. (PMID: 22446693) Modarresi F. … Wahlestedt C. (Nat. Biotechnol. 2012) 2 3 64
  2. Human brain derived neurotrophic factor (BDNF) genes, splicing patterns, and assessments of associations with substance abuse and Parkinson's Disease. (PMID: 15666411) Liu Q.-R. … Uhl G.R. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2005) 2 3 64
  3. BDNF Variants May Modulate Long-Term Visual Memory Performance in a Healthy Cohort. (PMID: 28304362) Avgan N. … Griffiths L.R. (Int J Mol Sci 2017) 3 64
  4. Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. (PMID: 24861553) Wen W. … Tanaka T. (Hum. Mol. Genet. 2014) 3 64
  5. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 3 64

Products for BDNF-AS Gene

Sources for BDNF-AS Gene

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