Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BDNF-AS Gene

Subcategory (RNA class) for BDNF-AS Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for BDNF-AS Gene

  • BDNF Antisense RNA 2 3 5
  • BDNF Antisense RNA 1 (Non-Protein Coding) 2 3
  • BDNF Opposite Strand (Non-Protein Coding) 2 3
  • BDNF Antisense RNA (Non-Protein Coding) 2 3
  • Brain-Derived Neurotrophic Factor Opposite Strand 3
  • Non-Protein Coding RNA 49 2
  • NCRNA00049 3
  • BDNF-AS1 3
  • BDNFOS 3
  • BDNF 3

External Ids for BDNF-AS Gene

Previous HGNC Symbols for BDNF-AS Gene


Summaries for BDNF-AS Gene

GeneCards Summary for BDNF-AS Gene

BDNF-AS (BDNF Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BDNF-AS include Substance Abuse.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BDNF-AS Gene

Genomics for BDNF-AS Gene

Regulatory Elements for BDNF-AS Gene

Enhancers for BDNF-AS Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around BDNF-AS on UCSC Golden Path with GeneCards custom track

Promoters for BDNF-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BDNF-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for BDNF-AS Gene

27,506,838 bp from pter
27,698,174 bp from pter
191,337 bases
Plus strand

Genomic View for BDNF-AS Gene

Genes around BDNF-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BDNF-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BDNF-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BDNF-AS Gene

Proteins for BDNF-AS Gene

Post-translational modifications for BDNF-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for BDNF-AS Gene

Domains & Families for BDNF-AS Gene

Gene Families for BDNF-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BDNF-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BDNF-AS Gene

Function for BDNF-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BDNF-AS Gene

Localization for BDNF-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BDNF-AS Gene

Pathways & Interactions for BDNF-AS Gene

SuperPathways for BDNF-AS Gene

No Data Available

Interacting Proteins for BDNF-AS Gene

Gene Ontology (GO) - Biological Process for BDNF-AS Gene


No data available for Pathways by source and SIGNOR curated interactions for BDNF-AS Gene

Drugs & Compounds for BDNF-AS Gene

(1) Drugs for BDNF-AS Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
antipsychotics Pharma 0
genes like me logo Genes that share compounds with BDNF-AS: view

Transcripts for BDNF-AS Gene

mRNA/cDNA for BDNF-AS Gene

(34) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BDNF-AS Gene

BDNF antisense RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BDNF-AS Gene

No ASD Table

Relevant External Links for BDNF-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BDNF-AS Gene

mRNA expression in normal human tissues for BDNF-AS Gene

mRNA differential expression in normal tissues according to GTEx for BDNF-AS Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).

SOURCE GeneReport for Unigene cluster for BDNF-AS Gene Hs.675323

genes like me logo Genes that share expression patterns with BDNF-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for BDNF-AS Gene

Orthologs for BDNF-AS Gene

Evolution for BDNF-AS Gene

Gene Tree for BDNF-AS (if available)
Gene Tree for BDNF-AS (if available)

No data available for Orthologs for BDNF-AS Gene

Paralogs for BDNF-AS Gene

No data available for Paralogs for BDNF-AS Gene

Variants for BDNF-AS Gene

Sequence variations from dbSNP and Humsavar for BDNF-AS Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs901925 -- 27,520,922(+) CTAGA(C/T)CTACA intron-variant
rs901926 -- 27,549,006(-) AGAGC(A/G)CCTGG intron-variant
rs925946 -- 27,645,655(+) AGTGA(G/T)TAAAG intron-variant
rs925947 -- 27,645,820(+) TTGGG(G/T)TAGAG intron-variant
rs972096 -- 27,530,835(+) CTCAG(C/T)ACTGA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for BDNF-AS Gene

Disorders for BDNF-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for BDNF-AS Gene - From: GeneCards

Disorder Aliases PubMed IDs
substance abuse
  • substance abuse problem
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for BDNF-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with BDNF-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BDNF-AS Gene

Publications for BDNF-AS Gene

  1. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. (PMID: 22446693) Modarresi F. … Wahlestedt C. (Nat. Biotechnol. 2012) 2 3 67
  2. Human brain derived neurotrophic factor (BDNF) genes, splicing patterns, and assessments of associations with substance abuse and Parkinson's Disease. (PMID: 15666411) Liu Q.-R. … Uhl G.R. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2005) 2 3
  3. Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. (PMID: 24861553) Wen W. … Tanaka T. (Hum. Mol. Genet. 2014) 3
  4. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 3
  5. Genome wide association study identifies KCNMA1 contributing to human obesity. (PMID: 21708048) Jiao H. … Dahlman I. (BMC Med Genomics 2011) 3

Products for BDNF-AS Gene

Sources for BDNF-AS Gene