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Aliases for BDNF-AS Gene

Subcategory (RNA class) for BDNF-AS Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for BDNF-AS Gene

  • BDNF Antisense RNA 2 3
  • BDNF Antisense RNA 1 (Non-Protein Coding) 2 3
  • BDNF Opposite Strand (Non-Protein Coding) 2 3
  • BDNF Antisense RNA (Non-Protein Coding) 2 3
  • Brain-Derived Neurotrophic Factor Opposite Strand 3
  • Non-Protein Coding RNA 49 2
  • NCRNA00049 3
  • ANTI-BDNF 3
  • BDNF-AS1 3
  • BDNFOS 3
  • BDNF 3

External Ids for BDNF-AS Gene

Previous HGNC Symbols for BDNF-AS Gene

  • BDNFOS

Summaries for BDNF-AS Gene

GeneCards Summary for BDNF-AS Gene

BDNF-AS (BDNF Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with BDNF-AS include substance abuse. Among its related pathways are MAPK signaling pathway and NF-KappaB Family Pathway.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BDNF-AS Gene

Genomics for BDNF-AS Gene

Genomic Location for BDNF-AS Gene

Chromosome:
11
Start:
27,506,838 bp from pter
End:
27,698,174 bp from pter
Size:
191,337 bases
Orientation:
Plus strand

Genomic View for BDNF-AS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BDNF-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BDNF-AS Gene

No data available for Regulatory Elements for BDNF-AS Gene

Proteins for BDNF-AS Gene

Post-translational modifications for BDNF-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for BDNF-AS Gene

Domains & Families for BDNF-AS Gene

Gene Families for BDNF-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BDNF-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BDNF-AS Gene

Function for BDNF-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for BDNF-AS Gene

Localization for BDNF-AS Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BDNF-AS Gene COMPARTMENTS Subcellular localization image for BDNF-AS gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for BDNF-AS Gene

Pathways & Interactions for BDNF-AS Gene

genes like me logo Genes that share pathways with BDNF-AS: view

Interacting Proteins for BDNF-AS Gene

Gene Ontology (GO) - Biological Process for BDNF-AS Gene

None

No data available for SIGNOR curated interactions for BDNF-AS Gene

Drugs & Compounds for BDNF-AS Gene

(1) Drugs for BDNF-AS Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
antipsychotics Pharma 0
genes like me logo Genes that share compounds with BDNF-AS: view

Transcripts for BDNF-AS Gene

mRNA/cDNA for BDNF-AS Gene

(34) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BDNF-AS Gene

BDNF antisense RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BDNF-AS Gene

No ASD Table

Relevant External Links for BDNF-AS Gene

GeneLoc Exon Structure for
BDNF-AS
ECgene alternative splicing isoforms for
BDNF-AS

Expression for BDNF-AS Gene

mRNA expression in normal human tissues for BDNF-AS Gene

mRNA differential expression in normal tissues according to GTEx for BDNF-AS Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).

SOURCE GeneReport for Unigene cluster for BDNF-AS Gene Hs.675323

genes like me logo Genes that share expression patterns with BDNF-AS: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for BDNF-AS Gene

Orthologs for BDNF-AS Gene

Evolution for BDNF-AS Gene

ENSEMBL:
Gene Tree for BDNF-AS (if available)
TreeFam:
Gene Tree for BDNF-AS (if available)

No data available for Orthologs for BDNF-AS Gene

Paralogs for BDNF-AS Gene

No data available for Paralogs for BDNF-AS Gene

Variants for BDNF-AS Gene

Sequence variations from dbSNP and Humsavar for BDNF-AS Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs901925 -- 27,520,922(+) CTAGA(C/T)CTACA intron-variant
rs901926 -- 27,549,006(-) AGAGC(A/G)CCTGG intron-variant
rs925946 -- 27,645,655(+) AGTGA(G/T)TAAAG intron-variant
rs925947 -- 27,645,820(+) TTGGG(G/T)TAGAG intron-variant
rs972096 -- 27,530,835(+) CTCAG(C/T)ACTGA intron-variant

Relevant External Links for BDNF-AS Gene

HapMap Linkage Disequilibrium report
BDNF-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BDNF-AS Gene

Disorders for BDNF-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for BDNF-AS Gene - From: GeneCards

Disorder Aliases PubMed IDs
substance abuse
  • substance abuse problem
- elite association

Relevant External Links for BDNF-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BDNF-AS
genes like me logo Genes that share disorders with BDNF-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BDNF-AS Gene

Publications for BDNF-AS Gene

  1. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. (PMID: 22446693) Modarresi F. … Wahlestedt C. (Nat. Biotechnol. 2012) 2 67
  2. Rodent BDNF genes, novel promoters, novel splice variants, and regulation by cocaine. (PMID: 16376315) Liu Q.R. … Uhl G.R. (Brain Res. 2006) 23 67
  3. Human brain derived neurotrophic factor (BDNF) genes, splicing patterns, and assessments of associations with substance abuse and Parkinson's Disease. (PMID: 15666411) Liu Q.-R. … Uhl G.R. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2005) 2 67
  4. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 67
  5. Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. (PMID: 24861553) Wen W. … Tanaka T. (Hum. Mol. Genet. 2014) 67

Products for BDNF-AS Gene

Sources for BDNF-AS Gene

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