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Aliases for BCYRN1 Gene

Subcategory (RNA class) for BCYRN1 Gene


Quality Score for this RNA gene is


Aliases for BCYRN1 Gene

  • Brain Cytoplasmic RNA 1 2 3
  • Brain Cytoplasmic RNA 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 4 2 3
  • Brain Cytoplasmic RNA 200-Alpha 2 3
  • Non-Protein Coding RNA 4 2 3
  • Brain Cytoplasmic RNA 1 (Analog Of Mouse Bc1) 3
  • Brain Cytoplasmic RNA 1, Bc1 Analog (Mouse) 2
  • Brain Cytoplasmic RNA 1, Bc1 Analog 3
  • BC200-Alpha 3
  • NCRNA00004 3
  • LINC00004 3
  • BC200a 3
  • BC200 3

External Ids for BCYRN1 Gene

ORGUL Members for BCYRN1 Gene

Previous GeneCards Identifiers for BCYRN1 Gene

  • GC02U990008
  • GC02P047415
  • GC02P047558
  • GC02P047299

Summaries for BCYRN1 Gene

Entrez Gene Summary for BCYRN1 Gene

  • This gene, which encodes a neural small non-messenger RNA, is a member of the family of interspersed repetitive DNA, and its product represents an example of a primate tissue-specific RNA polymerase III transcript. The RNA sequence is divided into three domains: a 5' portion homologous to the Alu Lm, a central adenosine-rich region, and the terminal 43-nt nonrepetitive domain. It is believed that this gene was retropositionally generated and recruited into a function regulating dendritic protein biosynthesis. At least two pseudogenes of this gene have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for BCYRN1 Gene

BCYRN1 (Brain Cytoplasmic RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCYRN1 Gene

Genomics for BCYRN1 Gene

Regulatory Elements for BCYRN1 Gene

Genomic Location for BCYRN1 Gene

47,331,060 bp from pter
47,344,517 bp from pter
13,458 bases
Plus strand

Genomic View for BCYRN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BCYRN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCYRN1 Gene

Proteins for BCYRN1 Gene

Post-translational modifications for BCYRN1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCYRN1 Gene

Domains for BCYRN1 Gene

Gene Families for BCYRN1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BCYRN1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCYRN1 Gene

Function for BCYRN1 Gene

Molecular function for BCYRN1 Gene

GENATLAS Biochemistry:
brain specific,200 nucleotide non-translatable RNA,component of a ribonucleoprotein complex,localized to dendrite-rich neuropil areas of the retina,hippocampus,neocortex

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BCYRN1 Gene

Localization for BCYRN1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BCYRN1 Gene

Pathways for BCYRN1 Gene

SuperPathways for BCYRN1 Gene

No Data Available

Interacting Proteins for BCYRN1 Gene

Gene Ontology (GO) - Biological Process for BCYRN1 Gene


No data available for Pathways by source for BCYRN1 Gene

Compounds for BCYRN1 Gene

(1) Novoseek inferred chemical compound relationships for BCYRN1 Gene

Compound -log(P) Hits PubMed IDs
adenylate 26.6 2
genes like me logo Genes that share compounds with BCYRN1: view

Transcripts for BCYRN1 Gene

mRNA/cDNA for BCYRN1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BCYRN1 Gene

No ASD Table

Relevant External Links for BCYRN1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for BCYRN1 Gene

mRNA expression in normal human tissues for BCYRN1 Gene

mRNA expression in normal human tissues for BCYRN1 Gene
genes like me logo Genes that share expressions with BCYRN1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for BCYRN1 Gene

Orthologs for BCYRN1 Gene

Evolution for BCYRN1 Gene

Gene Tree for BCYRN1 (if available)
Gene Tree for BCYRN1 (if available)

No data available for Orthologs for BCYRN1 Gene

Paralogs for BCYRN1 Gene

No data available for Paralogs for BCYRN1 Gene

Variants for BCYRN1 Gene

Structural Variations from Database of Genomic Variants (DGV) for BCYRN1 Gene

Variant ID Type Subtype PubMed ID
esv1584074 OTHER Inversion 17803354
esv33082 CNV Loss 17666407
nsv508781 CNV Insertion 20534489
nsv425542 CNV Loss 16902084
nsv512678 CNV Loss 21212237
esv2740213 CNV Deletion 23290073
esv27144 CNV Gain 19812545
nsv6954 CNV Insertion 18451855
esv2740214 CNV Deletion 23290073
nsv6955 CNV Loss 18451855
essv6290 CNV CNV 17122850
dgv2451e1 CNV Complex 17122850
nsv9951 CNV Loss 18304495
esv2740215 CNV Deletion 23290073
dgv516n21 CNV Loss 19592680
nsv7449 OTHER Inversion 18451855
nsv9952 CNV Loss 18304495

Relevant External Links for BCYRN1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for BCYRN1 Gene

Disorders for BCYRN1 Gene

(1) Novoseek inferred disease relationships for BCYRN1 Gene

Disease -log(P) Hits PubMed IDs
carcinoma 0 2
genes like me logo Genes that share disorders with BCYRN1: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Genatlas and External Links for BCYRN1 Gene

Publications for BCYRN1 Gene

  1. BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element. (PMID: 8265590) Martignetti J.A. … Brosius J. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3 23
  2. BC200 RNA in invasive and preinvasive breast cancer. (PMID: 15240511) Iacoangeli A. … Tiedge H. (Carcinogenesis 2004) 2 3 23
  3. Assignment of the human BC200 RNA gene (BCYRN1) to chromosome 2p16 by radiation hybrid mapping. (PMID: 9858834) Basile V. … Kennedy J.L. (Cytogenet. Cell Genet. 1998) 2 3 23
  4. Dendritic BC200 RNA in aging and in Alzheimer's disease. (PMID: 17553964) Mus E. … Tiedge H. (Proc. Natl. Acad. Sci. U.S.A. 2007) 2 3 23
  5. Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage. (PMID: 11399078) Kuryshev V.Y. … Brosius J. (J. Mol. Biol. 2001) 2 3

Products for BCYRN1 Gene

Sources for BCYRN1 Gene

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