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Aliases &
Descriptions
for BCYRN1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases |
|---|
| BC200 1, 2 | | BC200a 1, 2 | | NCRNA00004 1, 2 |
| | | Descriptions |
|---|
| brain cytoplasmic RNA 1 (non-protein coding) 2 | | brain cytoplasmic RNA 1, Bc1 analog (mouse) 1 |
|
| |
Search outside databases for aliases for BCYRN1 genePrevious GC identifer: GC02U990008 |
Summaries
for BCYRN1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for BCYRN1:
This gene, which encodes a neural small non-messenger RNA, is a member of the family of
interspersed repetitive DNA, and its product represents an example of a primate tissue-specific
RNA polymerase III transcript. The RNA sequence is divided into three domains: a 5' portion
homologous to the Alu Lm, a central adenosine-rich region, and the terminal 43-nt nonrepetitive
domain. It is believed that this gene was retropositionally generated and recruited into a
function regulating dendritic protein biosynthesis. At least two pseudogenes of this gene have
been identified. [provided by RefSeq]
|
Genomic Location
for BCYRN1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences)
About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
 Transcription factor binding sites upstream to the BCYRN1 gene 
Entrez Gene cytogenetic band: 2p21 HGNC cytogenetic band: 2p16BCYRN1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P047415:
(about GC identifiers)
Start:
|
47,415,958 bp from pter |
End:
|
47,416,157 bp from pter |
Size:
|
200 bases |
Orientation:
|
plus strand |
| Proteins
for BCYRN1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
|
Human Recombinant Proteins  Browse Origene for full length recombinant human proteins expressed in human HEK293 cells
Antibodies for BCYRN1:
Assays for BCYRN1: | Protein
Domains/
Families
for BCYRN1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- | Gene Function
for BCYRN1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Browse Origene for 29mer shRNA kit in GFP-retroviral vector
 Browse siRNA at Sigma-Aldrich
Browse shRNA at Sigma-Aldrich
Explore Sigma-Aldrich super-pooled esiRNAs
Browse Origene for untagged/tagged cDNA clones in CMV expression vector
Primers:  Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
OriGene genome-wide validated SYBR primer pairs: NR_001568
Genatlas biochemistry entry for BCYRN1:brain specific,200 nucleotide non-translatable RNA,component of a ribonucleoprotein
complex,localized to dendrite-rich neuropil areas of the retina,hippocampus,neocortex | Pathways & Interactions
for BCYRN1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
-- |
Drugs & Compounds
for BCYRN1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for BCYRN1
|
Transcripts
for BCYRN1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene)
About This Section
| Browse Origene for 29mer shRNA kit in GFP-retroviral vector
Browse siRNA at Sigma-Aldrich
Browse shRNA at Sigma-Aldrich
Explore Sigma-Aldrich super-pooled esiRNAs
Browse Origene for untagged/tagged cDNA clones in CMV expression vector
1 RNAdb entry of non coding RNAs:
LIT1721
 highest scoring ESTs for BCYRN1:CV405641
GeneLoc Exon Structure
|
Expression
for BCYRN1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| BCYRN1 expression in normal and diseased human tissues
Data from GNF BioGPS
About these images
About these images
CGAP SAGE TAG: --
|
Orthologs
for BCYRN1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
--
| Paralogs
for BCYRN1(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| -- |
SNPs/Variants
for BCYRN1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| -- |
Disorders & Mutations
for BCYRN1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606089
1  Novoseek disease relationship for BCYRN1 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| carcinoma |
0.54 |
2 |
9422992 (1), 15240511 (1) |
About this table
|
Medical News
for BCYRN1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for BCYRN1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/19 PubMed articles for BCYRN1 gene (see all 19
):- BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element. (PubMed id 8265590)1, 2, 3 Martignetti J.A. and Brosius J. (1993)
- Assignment of the human BC200 RNA gene (BCYRN1) to chromosome 2p16 by radiation hybrid mapping. (PubMed id 9858834)1, 2, 3 Basile V....Kennedy J.L. (1998)
- Primary structure, neural-specific expression, and dendritic location of human BC200 RNA. (PubMed id 7684772)1, 3 Tiedge H....Brosius J. (1993)
- BC200 RNA in invasive and preinvasive breast cancer. (PubMed id 15240511)1, 3 Iacoangeli A....Tiedge H. (2004)
- Dendritic BC200 RNA in aging and in Alzheimer's disease. (PubMed id 17553964)1, 3 Mus E....Tiedge H. (2007)
- Application of the BC1 RNA gene promoter for short hairpin RNA expression in cultured neuronal cells. (PubMed id 16054886)3 Kobayashi S....Anzai K. (2005)
- Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage. (PubMed id 11399078)3 Kuryshev V.Y....Brosius J. (2001)
- Expression of neural BC200 RNA in human tumours. (PubMed id 9422992)1 Chen W....Tiedge H. (1997)
- SYNCRIP, a component of dendritically localized mRNPs, binds to the translation regulator BC200 RNA. (PubMed id 18045242)1 Duning K....Kremerskothen J. (2008)
- Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners. (PubMed id 17175535)1 Khanam T....Skryabin B.V. (2007)
|
Search for BCYRN1
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing BCYRN1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing BCYRN1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BCYRN1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| About This Section
| --
| Services
for BCYRN1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section
| 
Products for BCYRN1:
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