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BCRP3 Gene(Pseudogene)

Breakpoint Cluster Region Pseudogene 3

GCID:
GC22P024632
GIFtS:
17
Genes Participants
UDN Logo

Aliases for BCRP3 Gene

Aliases for BCRP3 Gene

  • Breakpoint Cluster Region Pseudogene 3 2 3 5
  • Breakpoint Cluster Region-Like 6 2 3
  • Breakpoint Cluster Region-Like 3 2 3
  • BCRL3 3
  • BCRL6 3
  • BCR3 3

External Ids for BCRP3 Gene

Previous HGNC Symbols for BCRP3 Gene

  • BCR3
  • BCRL6
  • BCRL3

Previous GeneCards Identifiers for BCRP3 Gene

  • GC22P025030

Summaries for BCRP3 Gene

GeneCards Summary for BCRP3 Gene

BCRP3 (Breakpoint Cluster Region Pseudogene 3) is a Pseudogene.

Additional gene information for BCRP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCRP3 Gene

Genomics for BCRP3 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for BCRP3 Gene

Promoters and enhancers for BCRP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22I024632 Enhancer 1.1 Ensembl ENCODE 550.8 +0.2 186 1.4 HDGF ARNT GLI4 TCF12 ZNF121 ARID2 ZNF207 ZNF662 ZNF488 MEF2D BCRP3 ENSG00000284233 SPECC1L ENSG00000272977 ZNF70 ENSG00000272578 SMARCB1 ENSG00000232545 CABIN1 GGT1
GH22I024630 Enhancer 1 Ensembl ENCODE 550.8 -1.6 -1596 1.9 PKNOX1 ATF1 TCF12 EGR2 CAVIN1 CEBPB ZNF592 MEF2D ZNF585B SMARCA4 BCRP3 ENSG00000284233 ENSG00000272977 SPECC1L CRYBB2P1 POM121L10P ENSG00000230947
GH22I024242 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE 12.7 -387.7 -387687 6.1 HDGF ARNT ZNF493 ZFP64 ARID4B SIN3A GLI4 ZBTB7B ZNF48 ZNF207 GGT5 ENSG00000272578 POM121L9P ZNF70 ENSG00000272973 SPECC1L SNRPD3 MIF-AS1 RN7SL268P SUSD2
GH22I024548 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.6 -79.5 -79453 8.9 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNRPD3 GUCD1 ENSG00000272973 SGSM1 ENSG00000272578 UPB1 ADORA2A GGT1 SLC2A11 ENSG00000228923
GH22I024425 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.2 -201.0 -200957 13.9 HDGF PKNOX1 SMAD1 YY1 GLIS2 ZNF207 ZNF143 ATF7 RUNX3 RXRA ADORA2A PIR51261 SPECC1L-ADORA2A POM121L9P UPB1 ADORA2A-AS1 SPECC1L ENSG00000232545 SMARCB1 ZNF70
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around BCRP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for BCRP3 Gene

Genomic Locations for BCRP3 Gene
chr22:24,632,915-24,653,360
(GRCh38/hg38)
Size:
20,446 bases
Orientation:
Plus strand
chr22:25,028,882-25,049,327
(GRCh37/hg19)

Genomic View for BCRP3 Gene

Genes around BCRP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCRP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCRP3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for BCRP3 Gene

Proteins for BCRP3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for BCRP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCRP3 Gene

Domains & Families for BCRP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCRP3 Gene

Function for BCRP3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for BCRP3 Gene

Phenotypes for BCRP3 Gene

GenomeRNAi human phenotypes for BCRP3:
genes like me logo Genes that share phenotypes with BCRP3: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCRP3 Gene

Localization for BCRP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCRP3 Gene

Pathways & Interactions for BCRP3 Gene

SuperPathways for BCRP3 Gene

PathCards logo More details on SuperPathways for BCRP3
No Data Available

Interacting Proteins for BCRP3 Gene

Gene Ontology (GO) - Biological Process for BCRP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCRP3 Gene

Drugs & Compounds for BCRP3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for BCRP3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for BCRP3 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCRP3 Gene

Breakpoint cluster region pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for BCRP3 Gene

No ASD Table

Relevant External Links for BCRP3 Gene

GeneLoc Exon Structure for
BCRP3
ECgene alternative splicing isoforms for
BCRP3

Expression for BCRP3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BCRP3 Gene

mRNA expression in normal human tissues for BCRP3 Gene
mRNA expression by GTEx for BCRP3 Gene

mRNA differential expression in normal tissues according to GTEx for BCRP3 Gene

This gene is overexpressed in Kidney - Cortex (x13.0) and Brain - Cerebellum (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of BCRP3 Gene:

BCRP3

SOURCE GeneReport for Unigene cluster for BCRP3 Gene:

Hs.655234
genes like me logo Genes that share expression patterns with BCRP3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCRP3 Gene

Orthologs for BCRP3 Gene

Evolution for BCRP3 Gene

ENSEMBL:
Gene Tree for BCRP3 (if available)
TreeFam:
Gene Tree for BCRP3 (if available)

No data available for Orthologs for BCRP3 Gene

Paralogs for BCRP3 Gene

No data available for Paralogs for BCRP3 Gene

Variants for BCRP3 Gene

Sequence variations from dbSNP and Humsavar for BCRP3 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000050620 -- 24,640,828(+) TTTTTTTTTT/TTTTTTTTT intron_variant
rs1000318024 -- 24,643,714(+) C/G intron_variant
rs1000349009 -- 24,644,010(+) C/T intron_variant
rs1000383605 -- 24,636,518(+) T/C intron_variant
rs1000510092 -- 24,632,124(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for BCRP3 Gene

Variant ID Type Subtype PubMed ID
dgv4528n100 CNV gain 25217958
esv2530395 CNV loss 19546169
esv25356 CNV gain 19812545
esv2659398 CNV deletion 23128226
esv2724041 CNV deletion 23290073
esv2724068 CNV deletion 23290073
esv3575443 CNV gain 25503493
esv3647437 CNV loss 21293372
nsv1055420 CNV loss 25217958
nsv1055830 CNV gain 25217958
nsv1110863 OTHER inversion 24896259
nsv1149688 CNV duplication 26484159
nsv7350 OTHER inversion 18451855
nsv962775 CNV duplication 23825009
nsv962849 CNV duplication 23825009
nsv9884 CNV gain+loss 18304495

Additional Variant Information for BCRP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCRP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BCRP3 Gene

Disorders for BCRP3 Gene

Additional Disease Information for BCRP3

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for BCRP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCRP3 Gene

Publications for BCRP3 Gene

  1. Linear order of the four BCR-related loci in 22q11. (PMID: 3267213) Budarf M … Emanuel BS (Genomics 1988) 2 3 58
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I … O'Brien KP (Nature 1999) 3 58

Products for BCRP3 Gene

Sources for BCRP3 Gene

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