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BCRP3 Gene(Pseudogene)

Breakpoint Cluster Region Pseudogene 3

GCID:
GC22P024632
GIFtS:
17
Genes Participants
UDN Logo

Aliases for BCRP3 Gene

Aliases for BCRP3 Gene

  • Breakpoint Cluster Region Pseudogene 3 2 3 5
  • Breakpoint Cluster Region-Like 6 2 3
  • Breakpoint Cluster Region-Like 3 2 3
  • BCRL3 3
  • BCRL6 3
  • BCR3 3

External Ids for BCRP3 Gene

Previous HGNC Symbols for BCRP3 Gene

  • BCR3
  • BCRL6
  • BCRL3

Previous GeneCards Identifiers for BCRP3 Gene

  • GC22P025030

Summaries for BCRP3 Gene

GeneCards Summary for BCRP3 Gene

BCRP3 (Breakpoint Cluster Region Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCRP3 Gene

Genomics for BCRP3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for BCRP3 Gene

Enhancers for BCRP3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around BCRP3 on UCSC Golden Path with GeneCards custom track

Promoters for BCRP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BCRP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for BCRP3 Gene

Chromosome:
22
Start:
24,632,915 bp from pter
End:
24,653,360 bp from pter
Size:
20,446 bases
Orientation:
Plus strand

Genomic View for BCRP3 Gene

Genes around BCRP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCRP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCRP3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for BCRP3 Gene

Proteins for BCRP3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for BCRP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCRP3 Gene

Domains & Families for BCRP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCRP3 Gene

Function for BCRP3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for BCRP3 Gene

GenomeRNAi human phenotypes for BCRP3:
genes like me logo Genes that share phenotypes with BCRP3: view

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCRP3 Gene

Localization for BCRP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BCRP3 Gene

Pathways & Interactions for BCRP3 Gene

SuperPathways for BCRP3 Gene

PathCards logoMore details on SuperPathways for BCRP3
No Data Available

Interacting Proteins for BCRP3 Gene

Gene Ontology (GO) - Biological Process for BCRP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCRP3 Gene

Drugs & Compounds for BCRP3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for BCRP3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for BCRP3 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCRP3 Gene

Breakpoint cluster region pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCRP3 Gene

No ASD Table

Relevant External Links for BCRP3 Gene

GeneLoc Exon Structure for
BCRP3
ECgene alternative splicing isoforms for
BCRP3

Expression for BCRP3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for BCRP3 Gene

mRNA expression in normal human tissues for BCRP3 Gene
mRNA expression by GTEx for BCRP3 Gene

mRNA differential expression in normal tissues according to GTEx for BCRP3 Gene

This gene is overexpressed in Kidney - Cortex (x13.0) and Brain - Cerebellum (x4.2).

SOURCE GeneReport for Unigene cluster for BCRP3 Gene Hs.655234

genes like me logo Genes that share expression patterns with BCRP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for BCRP3 Gene

Orthologs for BCRP3 Gene

Evolution for BCRP3 Gene

ENSEMBL:
Gene Tree for BCRP3 (if available)
TreeFam:
Gene Tree for BCRP3 (if available)

No data available for Orthologs for BCRP3 Gene

Paralogs for BCRP3 Gene

No data available for Paralogs for BCRP3 Gene

Variants for BCRP3 Gene

Sequence variations from dbSNP and Humsavar for BCRP3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs7290237 -- 24,632,783(+) CCTAC(C/T)AGCAG upstream-variant-2KB
rs2330888 -- 24,636,922(+) TTCCT(A/C)AATAA intron-variant
rs2330889 -- 24,636,946(+) tataa(C/T)ctatt intron-variant
rs7293090 -- 24,636,719(+) agaac(A/G)aaaac intron-variant
rs34168437 -- 24,636,396(+) GAAAG(A/C)AAAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BCRP3 Gene

Variant ID Type Subtype PubMed ID
nsv7350 OTHER Inversion 18451855
esv2724041 CNV Deletion 23290073
esv2724068 CNV Deletion 23290073
nsv9884 CNV Gain+Loss 18304495
esv25356 CNV Gain 19812545
esv2530395 CNV Loss 19546169
esv2659398 CNV Deletion 23128226

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for BCRP3 Gene

Disorders for BCRP3 Gene

Relevant External Links for BCRP3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BCRP3

No disorders were found for BCRP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCRP3 Gene

Publications for BCRP3 Gene

  1. Linear order of the four BCR-related loci in 22q11. (PMID: 3267213) Budarf M. … Emanuel B.S. (Genomics 1988) 2 3 67
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3

Products for BCRP3 Gene

Sources for BCRP3 Gene

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