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Aliases for BCRP2 Gene

Aliases for BCRP2 Gene

  • Breakpoint Cluster Region Pseudogene 2 2 3
  • Breakpoint Cluster Region-Like 2 2 3
  • BCRL2 3 6
  • BCR-2 3
  • BCR2 3

External Ids for BCRP2 Gene

Previous Symbols for BCRP2 Gene

  • BCR2
  • BCRL2

Summaries for BCRP2 Gene

GeneCards Summary for BCRP2 Gene

BCRP2 (Breakpoint Cluster Region Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCRP2 Gene

Genomics for BCRP2 Gene

Genomic Location for BCRP2 Gene

Start:
21,103,016 bp from pter
End:
21,122,286 bp from pter
Size:
19,271 bases
Orientation:
Plus strand

Genomic View for BCRP2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BCRP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCRP2 Gene

No data available for Regulatory Elements for BCRP2 Gene

Proteins for BCRP2 Gene

Post-translational modifications for BCRP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCRP2 Gene

Domains for BCRP2 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for BCRP2 Gene

Function for BCRP2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BCRP2 Gene

Localization for BCRP2 Gene

No data available for Gene Ontology (GO) - Cellular Components for BCRP2 Gene

Pathways for BCRP2 Gene

SuperPathways for BCRP2 Gene

No Data Available

Interacting Proteins for BCRP2 Gene

Gene Ontology (GO) - Biological Process for BCRP2 Gene

None

No data available for Pathways by source for BCRP2 Gene

Transcripts for BCRP2 Gene

mRNA/cDNA for BCRP2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCRP2 Gene

Breakpoint cluster region pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCRP2 Gene

No ASD Table

Relevant External Links for BCRP2 Gene

GeneLoc Exon Structure for
BCRP2
ECgene alternative splicing isoforms for
BCRP2

Expression for BCRP2 Gene

mRNA expression in normal human tissues for BCRP2 Gene

mRNA differential expression in normal tissues according to GTEx for BCRP2 Gene

This gene is overexpressed in Testis (11.2), Brain - Cerebellar Hemisphere (5.7), Brain - Hypothalamus (5.7), Brain - Cerebellum (5.6), and Kidney - Cortex (4.4).

SOURCE GeneReport for Unigene cluster for BCRP2 Gene Hs.745077

genes like me logo Genes that share expressions with BCRP2: view

Orthologs for BCRP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for BCRP2 Gene

Organism Taxonomy Gene Similarity Type Details
fruit fly
(Drosophila melanogaster)
Insecta CG2112 38
  • 43 (a)
worm
(Caenorhabditis elegans)
Secernentea R11D1.1b 38
  • 29 (a)
Species with no ortholog for BCRP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for BCRP2 Gene

ENSEMBL:
Gene Tree for BCRP2 (if available)
TreeFam:
Gene Tree for BCRP2 (if available)

Paralogs for BCRP2 Gene

No data available for Paralogs for BCRP2 Gene

Variants for BCRP2 Gene

Sequence variations from dbSNP and Humsavar for BCRP2 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs11947 -- 21,115,264(+) CACAT(A/G)AGCCC intron-variant
rs140387 -- 21,103,631(+) AAAAA(A/G)AAAAA intron-variant
rs140388 -- 21,103,624(+) TTCTG(-/A)AAAAA intron-variant
rs140389 -- 21,103,786(+) TTTGC(A/G)TTGGG intron-variant
rs140390 -- 21,105,719(+) TTAGA(A/G)GTTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BCRP2 Gene

Variant ID Type Subtype PubMed ID
nsv436864 CNV Insertion 17901297
nsv914390 CNV Gain 21882294
nsv523162 CNV Loss 19592680
esv2678175 CNV Deletion 23128226
nsv914419 CNV Gain 21882294
nsv914423 CNV Gain 21882294
nsv834142 CNV Gain 17160897
nsv914430 CNV Gain 21882294
nsv469751 CNV Gain 16826518
nsv471595 CNV Gain+Loss 15918152
nsv437849 CNV Loss 16327808
nsv914431 CNV Gain 21882294
nsv438327 CNV Loss 16468122
nsv820868 CNV Duplication 20802225
esv28075 CNV Gain+Loss 19812545
nsv471490 CNV Duplication 19718026
dgv4874n71 CNV Gain 21882294

Relevant External Links for BCRP2 Gene

HapMap Linkage Disequilibrium report
BCRP2

Disorders for BCRP2 Gene

No disorders were found for BCRP2 Gene.

No data available for UniProtKB/Swiss-Prot for BCRP2 Gene

Publications for BCRP2 Gene

  1. Linear order of the four BCR-related loci in 22q11. (PMID: 3267213) Budarf M. … Emanuel B.S. (Genomics 1988) 2 3
  2. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for BCRP2 Gene

Sources for BCRP2 Gene

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