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Aliases & Descriptions for BCR
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ALL 1 , 2 , 5 BCR1 2 , 3 CML 1 , 2 , 5 D22S11 2 , 3 D22S662 1 , 2 EC 2.7.11.1 3 FLJ16453 2 PHL 1 , 2 , 5
Descriptions Renal carcinoma antigen NY-REN-26 3 breakpoint cluster region 2
Search outside databases for aliases for BCR genePrevious GC identifers: GC22P020221 GC22P021847
Summaries for BCR (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for BCR : A reciprocal translocation between chromosomes 22 and 9 produces the Philadelphia chromosome, whichis often found in patients with chronic myelogenous leukemia. The chromosome 22 breakpoint forthis translocation is located within the BCR gene. The translocation produces a fusion proteinwhich is encoded by sequence from both BCR and ABL, the gene at the chromosome 9 breakpoint.Although the BCR-ABL fusion protein has been extensively studied, the function of the normal BCRgene product is not clear. The protein has serine/threonine kinase activity and is aGTPase-activating protein for p21rac. Two transcript variants encoding different isoforms havebeen found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: BCR_HUMAN, P11274 Function : GTPase-activating protein for RAC1 and CDC42. Promotes the exchange of RAC or CDC42-boundGDP by GTP, thereby activating them. Displays serine/threonine kinase activity
Gene Wiki entry for BCR (BCR_gene)
Genomic Location for BCR
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the BCR gene Entrez Gene cytogenetic band: 22q11|22q11.23 Ensembl cytogenetic band: 22q11.23 HGNC cytogenetic band: 22q11 BCR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P021822:
(about GC identifiers )
Start:
21,852,552 bp from pter
End:
21,990,224 bp from pter
Size:
137,673 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000022.9 NT_011520.11 Proteins for BCR
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: BCR_HUMAN, P11274 (See
protein sequence )Recommended Name: Breakpoint cluster region protein Size : 1271 amino acids; 142819 Da
Subunit : Homotetramer. Interacts with PDZK1. May interact with CCPG1 (By similarity)
PDB structure from and Proteopedia : 1K1F (3D)
 2AIN (3D)
 
Secondary accessions : P78501 Q12842 Q4LE80 Q6NZI3Alternative splicing : 2 isoforms : P11274-1 P11274-2
Post-translational modifications:
Autophosphorylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004318.3 NP_067585.2 ENSEMBL proteins: ENSP00000335450 ENSP00000381524 ENSP00000292697 ENSP00000290956 ENSP00000352535 ENSP00000303507 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005622 intracellular
IEA --
About this table Antibodies for BCR: Assays for BCR:
Protein
Domains/ Families for BCR(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P11274 ProtoNet protein and cluster: P11274
4 Blocks protein families : IPB000008 C2 domain IPB000198 RhoGAP domain IPB000219 DH domain IPB001849 Pleckstrin-like UniProtKB/Swiss-Prot: BCR_HUMAN, P11274 Domain : The region involved in binding to ABL1 SH2-domain is rich in serine residues and needs tobe Ser/Thr phosphorylated prior to SH2 binding. This region is essential for the activation of theABL1 tyrosine kinase and transforming potential of the chimeric BCR-ABL oncogene Domain : The DH domain is involved in interaction with CCPG1 (By similarity)Similarity : Contains 1 C2 domainSimilarity : Contains 1 DH (DBL-homology) domainSimilarity : Contains 1 PH domainSimilarity : Contains 1 Rho-GAP domain
Gene Function for BCR
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_021574 Applied Biosystems Silencer ® siRNAs for BCR Sigma-Aldrich siRNA and siRNA Panels for BCR Sigma-Aldrich shRNA Panels and shRNA for BCR Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004327                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004327                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004327  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004327 UniProtKB/Swiss-Prot: BCR_HUMAN, P11274 Function : GTPase-activating protein for RAC1 and CDC42. Promotes the exchange of RAC or CDC42-boundGDP by GTP, thereby activating them. Displays serine/threonine kinase activity Catalytic activity : ATP + a protein = ADP + a phosphoproteinEnzyme Number (IUBMB): EC 2.7.11.1
Genatlas biochemistry entry for BCR :breakpoint cluster region
11 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Bcr) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for BCR
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for BCR 5/132 Interacting proteins for BCR (ENSP00000303507 3 P11274 2 ) via UniProtKB, MINT, and/or STRING (see all 132
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006468 protein amino acid phosphorylation
TAS 1657398 GO:0007242 intracellular signaling cascade
IEA -- GO:0035023 regulation of Rho protein signal transduction
IEA --
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Drugs & Compounds for BCR (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for BCR 10/33 Novoseek chemical compound relationships for BCR gene (see all 33
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
80.55
412
8955135 (6), 10405761 (6), 9178913 (6), 7529874 (5) (see all 99 )
blys
65.42
9
17548587 (2), 14962189 (2), 12956429 (2), 18978795 (1) (see all 5 )
phosphatidylinositol
50.48
19
11823472 (2), 14555967 (1), 8805618 (1), 11345196 (1) (see all 14 )
phosphotyrosine
44.28
15
10442632 (4), 1712671 (2), 8912843 (1), 11809685 (1) (see all 7 )
inositol 1,4,5 trisphosphate
39.19
7
9565626 (2), 10327049 (1), 14558886 (1), 15284241 (1) (see all 6 )
phosphoinositide
36.23
8
9139721 (1), 12077122 (1), 12524457 (1), 9252119 (1) (see all 8 )
bgl ii
36.13
2
8632666 (1), 11672777 (1)
threonine
35.43
26
9467953 (3), 8622703 (3), 10900006 (2), 16648854 (1) (see all 14 )
calcium
30.76
79
18426802 (4), 9533441 (3), 10196207 (3), 9565626 (2) (see all 46 )
benzoyl-coa
29.15
2
16116275 (1), 15721605 (1)
About this table
Transcripts for BCR(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_021574 Sigma-Aldrich siRNA and siRNA Panels for BCR Sigma-Aldrich shRNA Panels and shRNA for BCR Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004327 NM_021574
REFSEQ mRNAs for BCR gene (2 alternative transcripts): NM_004327.3 NM_021574.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004327 NM_021574
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004327                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004327                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004327  
Additional cDNA sequence: BC071742.1
24/36 DOTS entries (see all 36
): DT.115766 DT.100826988 DT.86995909 DT.100826985 DT.102841720 DT.120677584 DT.95184998 DT.95354641 DT.102841710 DT.120677784 DT.120676864 DT.100826990 DT.97836027 DT.92006114 DT.106787 DT.120677442 DT.100038569 DT.121201744 DT.91732517 DT.91761972 DT.91761973 DT.92031691 DT.95086271 DT.100826986
24/127 AceView cDNA sequences (see all 127
):BE315159 BF873836 BC031568 BE739832 H55528 BM910362 BX489609 BQ709937 AA371833 BQ422888 BU196996 CR623143 BM454840 CB144645 H55545 BQ691951 H55543 AY536250 H55699 AY536248 BE272823 F06286 BQ441890 AK124310
highest scoring ESTs for BCR :R54450 X02596 AA126020 AA284789 AA419342 AA594249 AA594310 AA633478 AA776955 AI015232
Unigene Clusters for BCR: Breakpoint cluster region Hs.517461 [show with all ESTs ] , Hs.715409 [show with all ESTs ] Unigene Representative Sequences: NM_004327 , BC071742 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for BCR (see all 6
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16 SP1 :                             -               SP2 :     -   -                                     SP3 :                     -         -               SP4 :                                           SP5 :   -     -                                    
About this scheme ECgene alternative splicing isoforms for BCR 6 Ensembl transcripts including schematic representations : ENST00000334149
ENST00000398512
ENST00000292697
ENST00000290956
ENST00000359540
ENST00000305877
Expression for BCR
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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BCR expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for BCR 1 / 2 / 3
17 probe-sets matching BCR gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene clusters: Hs.517461 Hs.715409 Expression variation in blood from EXPOLDB for BCR
Orthologs for BCR
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for BCR gene from 5/7 species (see all 7
)
About this table Species with no ortholog for BCR ENSEMBL Gene Tree for BCR Paralogs for BCR (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for BCR gene SYDE2 2 LOC728468 2 BCRL4 2 FLJ42953 2 ABR 2 SYDE1 2
SNPs/Variants for BCR (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for BCR (up to first 250kb)
Disorders & Mutations for BCR
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 151410 UniProtKB/Swiss-Prot: BCR_HUMAN, P11274
A chromosomal aberration involving BCR is a cause of chronic myeloid leukemia (CML)[MIM:608232]. Translocation t(9;22)(q34;q11) with ABL1. The translocation produces a BCR-ABL foundalso in acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL)
10/61 Novoseek disease relationships for BCR gene (see all 61
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
myeloid leukemia chronic
91.54
154
12011769 (2), 2403827 (2), 7512367 (2), 2337672 (2) (see all 99 )
blast crisis
81.88
12
7683349 (3), 2337672 (3), 1961034 (1), 1427440 (1) (see all 8 )
leukemia
75.49
118
8435337 (4), 9341866 (3), 7513545 (2), 1961034 (2) (see all 90 )
philadelphia chromosome positive chronic myelogenous leukemia
71.45
1
17604501 (1)
lymphoblastic leukemia acute
69.59
25
2145450 (2), 1705008 (1), 8426467 (1), 11369654 (1) (see all 22 )
myeloproliferative disorders
67.12
8
8818385 (2), 19394693 (1), 11746971 (1), 10490629 (1) (see all 5 )
leukemia lymphocytic chronic
65.92
12
17928528 (1), 17003377 (1), 9369427 (1), 15057307 (1) (see all 12 )
lymphocytic leukemia chronic b-cell
60.65
5
16616061 (1), 9049959 (1), 19074730 (1), 15591116 (1) (see all 5 )
burkitt lymphoma
60.23
12
10438726 (2), 11027651 (2), 9233773 (1), 9533441 (1) (see all 10 )
x-linked agammaglobulinemia
56.76
2
15466623 (1), 10201980 (1)
About this table Human Gene Mutation Database : BCR Genetic Association Database: BCR Human Genome Epidemiology Navigator: BCR (144 documents) Tumor Gene Database : BCR
Medical News for BCR (Possibly Related Articles in
Doctor's Guide )
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Publications for BCR (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/848 PubMed articles for BCR gene (see all 848
): The BCR gene encodes a novel serine/threonine kinase activity within a single exon. (PubMed id 1657398) 1, 2, 3, 4 Maru Y. and Witte O.N. (1991) Characterization of the BCR promoter in Philadelphia chromosome- positive and -negative cell lines. (PubMed id 1900918) 1, 3, 4 Shah N.P.... Denny C.T. (1991) Sequence and analysis of the human ABL gene, the BCR gene, and regions involved in the Philadelphia chromosomal translocation. (PubMed id 7665185) 1, 3, 4 Chissoe S.L.... Roe B.A. (1995) BCR sequences essential for transformation by the BCR-ABL oncogene bind to the ABL SH2 regulatory domain in a non-phosphotyrosine- dependent manner. (PubMed id 1712671) 1, 3, 4 Pendergast A.M.... Witte O.N. (1991) Bcr (breakpoint cluster region) protein binds to PDZ-domains of scaffold protein PDZK1 and vesicle coat protein Mint3. (PubMed id 15494376) 1, 3, 4 Malmberg E.K.... Riordan J.R. (2004) [Polymorphism analysis of 5' promotor region of BCR gene] (PubMed id 15248918) 1, 3, 6 Tian H....Zhou S.Y. (2004) Bcr encodes a GTPase-activating protein for p21rac. (PubMed id 1903516) 1, 3, 4 Diekmann D.... Hall A. (1991) Activity of the Bcr GTPase-activating domain is regulated through direct protein/protein interaction with the Rho guanine nucleotide dissociation inhibitor. (PubMed id 18070886) 2, 3 Kweon S.M....Heisterkamp N. (2008) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) [Role of molecular screening for common fusion genes in the diagnosis and classification of leukemia] (PubMed id 15968309) 3, 6 Zhu Y.L....Liu J. (2005)
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Genome Databases showing BCR
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing BCR
(According to HUGE )
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Specialized Databases showing BCR (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for BCR (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for BCR:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009