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Aliases for BCORP1 Gene

Aliases for BCORP1 Gene

  • BCL6 Corepressor Pseudogene 1 2 3
  • BCL-6 Corepressor-Like Protein 2 3 4
  • BCL-6 Corepressor Pseudogene 1 3 4
  • BCL6 Co-Repressor-Like 2 2 3
  • BCL6 Corepressor-Like 2 2 3
  • BCORL2 3 4
  • BCL6 Co-Repressor Pseudogene 3
  • Putative BCoR-Like Protein 2 3
  • BCoR-Like Protein 2 3

External Ids for BCORP1 Gene

Previous Symbols for BCORP1 Gene

  • BCORL2

Summaries for BCORP1 Gene

GeneCards Summary for BCORP1 Gene

BCORP1 (BCL6 Corepressor Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCORP1 Gene

Genomics for BCORP1 Gene

Genomic Location for BCORP1 Gene

Start:
19,455,431 bp from pter
End:
19,503,153 bp from pter
Size:
47,723 bases
Orientation:
Minus strand

Genomic View for BCORP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BCORP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCORP1 Gene

No data available for Regulatory Elements for BCORP1 Gene

Proteins for BCORP1 Gene

  • Protein details for BCORP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N888-BCOR2_HUMAN
    Recommended name:
    Putative BCoR-like protein 2
    Protein Accession:
    Q8N888
    Secondary Accessions:

    Protein attributes for BCORP1 Gene

    Size:
    145 amino acids
    Molecular mass:
    16258 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BCORP1 Gene

Proteomics data for BCORP1 Gene at MOPED

Post-translational modifications for BCORP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCORP1 Gene

Domains for BCORP1 Gene

Protein Domains for BCORP1 Gene

ProtoNet:

UniProtKB/Swiss-Prot:

BCOR2_HUMAN
Family:
  • Belongs to the BCOR family.:
    • Q8N888
genes like me logo Genes that share domains with BCORP1: view

No data available for Gene Families for BCORP1 Gene

Function for BCORP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BCORP1 Gene

Localization for BCORP1 Gene

No data available for Gene Ontology (GO) - Cellular Components for BCORP1 Gene

Pathways for BCORP1 Gene

SuperPathways for BCORP1 Gene

No Data Available

Interacting Proteins for BCORP1 Gene

Gene Ontology (GO) - Biological Process for BCORP1 Gene

None

No data available for Pathways by source for BCORP1 Gene

Transcripts for BCORP1 Gene

mRNA/cDNA for BCORP1 Gene

(2) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCORP1 Gene

BCL6 corepressor pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCORP1 Gene

No ASD Table

Relevant External Links for BCORP1 Gene

GeneLoc Exon Structure for
BCORP1
ECgene alternative splicing isoforms for
BCORP1

Expression for BCORP1 Gene

mRNA expression in normal human tissues for BCORP1 Gene

mRNA differential expression in normal tissues according to GTEx for BCORP1 Gene

This gene is overexpressed in Whole Blood (8.8), Spleen (7.5), and Small Intestine - Terminal Ileum (6.9).

SOURCE GeneReport for Unigene cluster for BCORP1 Gene Hs.211713

genes like me logo Genes that share expressions with BCORP1: view

Orthologs for BCORP1 Gene

Evolution for BCORP1 Gene

ENSEMBL:
Gene Tree for BCORP1 (if available)
TreeFam:
Gene Tree for BCORP1 (if available)

No data available for Orthologs for BCORP1 Gene

Paralogs for BCORP1 Gene

Selected SIMAP similar genes for BCORP1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with BCORP1: view

No data available for Paralogs for BCORP1 Gene

Variants for BCORP1 Gene

Sequence variations from dbSNP and Humsavar for BCORP1 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs6530604 -- 19,489,783(+) acaca(A/C)aaaaa intron-variant
rs7067466 -- 19,493,079(+) tctca(A/T)aagaa intron-variant
rs9785678 -- 19,490,398(+) catct(C/T)aaatc intron-variant
rs9785684 -- 19,499,790(+) ACCAA(G/T)TTTTG intron-variant
rs9786502 -- 19,456,970(+) AGGAG(C/T)CACTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BCORP1 Gene

Variant ID Type Subtype PubMed ID
nsv10025 CNV Gain 18304495

Relevant External Links for BCORP1 Gene

HapMap Linkage Disequilibrium report
BCORP1

Disorders for BCORP1 Gene

No disorders were found for BCORP1 Gene.

No data available for UniProtKB/Swiss-Prot for BCORP1 Gene

Publications for BCORP1 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for BCORP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate BCORP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for BCORP1
    • Block miRNA regulation of BCORP1 using miScript Target Protectors

    Sources for BCORP1 Gene

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