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Aliases for BCLAF1 Gene

Aliases for BCLAF1 Gene

  • BCL2 Associated Transcription Factor 1 2 3
  • BCL2-Associated Transcription Factor 1 2 3 5
  • BTF 3 4
  • BK211L9.1 3
  • KIAA0164 4

External Ids for BCLAF1 Gene

Previous GeneCards Identifiers for BCLAF1 Gene

  • GC06M136560
  • GC06M136621
  • GC06M134142
  • GC06M136578

Summaries for BCLAF1 Gene

Entrez Gene Summary for BCLAF1 Gene

  • This gene encodes a transcriptional repressor that interacts with several members of the BCL2 family of proteins. Overexpression of this protein induces apoptosis, which can be suppressed by co-expression of BCL2 proteins. The protein localizes to dot-like structures throughout the nucleus, and redistributes to a zone near the nuclear envelope in cells undergoing apoptosis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for BCLAF1 Gene

BCLAF1 (BCL2 Associated Transcription Factor 1) is a Protein Coding gene. Diseases associated with BCLAF1 include giant axonal neuropathy and superficial mycosis. GO annotations related to this gene include poly(A) RNA binding. An important paralog of this gene is CXorf23.

UniProtKB/Swiss-Prot for BCLAF1 Gene

  • Death-promoting transcriptional repressor. May be involved in cyclin-D1/CCND1 mRNA stability through the SNARP complex which associates with both the 3end of the CCND1 gene and its mRNA.

Gene Wiki entry for BCLAF1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCLAF1 Gene

Genomics for BCLAF1 Gene

Regulatory Elements for BCLAF1 Gene

Promoters for BCLAF1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around BCLAF1 on UCSC Golden Path with GeneCards custom track

Genomic Location for BCLAF1 Gene

Chromosome:
6
Start:
136,256,863 bp from pter
End:
136,290,645 bp from pter
Size:
33,783 bases
Orientation:
Minus strand

Genomic View for BCLAF1 Gene

Genes around BCLAF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCLAF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCLAF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCLAF1 Gene

Proteins for BCLAF1 Gene

  • Protein details for BCLAF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NYF8-BCLF1_HUMAN
    Recommended name:
    Bcl-2-associated transcription factor 1
    Protein Accession:
    Q9NYF8
    Secondary Accessions:
    • A2RU75
    • B7ZM58
    • E1P586
    • Q14673
    • Q86WU6
    • Q86WY0

    Protein attributes for BCLAF1 Gene

    Size:
    920 amino acids
    Molecular mass:
    106122 Da
    Quaternary structure:
    • Interacts with Bcl-2 related proteins, EMD, with the adenovirus E1B 19 kDa protein and with DNA. Component of the SNARP complex which consists at least of SNIP1, SNW1, THRAP3, BCLAF1 and PNN. Component of the WTAP complex composed of WTAP, ZC3H13, CBLL1, KIAA1429, RBM15, BCLAF1 and THRAP3.
    SequenceCaution:
    • Sequence=AAH47687.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH47887.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH56894.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH63846.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAA11481.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for BCLAF1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BCLAF1 Gene

Proteomics data for BCLAF1 Gene at MOPED

Post-translational modifications for BCLAF1 Gene

  • Citrullinated by PADI4.
  • Ubiquitination at Lys 517, Lys 567, Lys 593, Lys 622, and Lys 845
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for BCLAF1 Gene

Domains & Families for BCLAF1 Gene

Protein Domains for BCLAF1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for BCLAF1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BCLAF1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for BCLAF1 Gene

Function for BCLAF1 Gene

Molecular function for BCLAF1 Gene

UniProtKB/Swiss-Prot Function:
Death-promoting transcriptional repressor. May be involved in cyclin-D1/CCND1 mRNA stability through the SNARP complex which associates with both the 3end of the CCND1 gene and its mRNA.
genes like me logo Genes that share phenotypes with BCLAF1: view

Animal Models for BCLAF1 Gene

MGI Knock Outs for BCLAF1:

Animal Model Products

  • Taconic Biosciences Mouse Models for BCLAF1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BCLAF1 Gene

Localization for BCLAF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BCLAF1 Gene

Cytoplasm. Nucleus. Nucleus speckle. Nucleus, nucleoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BCLAF1 Gene COMPARTMENTS Subcellular localization image for BCLAF1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for BCLAF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA 24100041
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with BCLAF1: view

Pathways & Interactions for BCLAF1 Gene

SuperPathways for BCLAF1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BCLAF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006915 apoptotic process IEA,TAS 10330179
GO:0043620 regulation of DNA-templated transcription in response to stress IMP 17938203
GO:2000144 positive regulation of DNA-templated transcription, initiation IMP 17938203
GO:2001022 positive regulation of response to DNA damage stimulus IEA,IMP 17938203
genes like me logo Genes that share ontologies with BCLAF1: view

No data available for Pathways by source and SIGNOR curated interactions for BCLAF1 Gene

Drugs & Compounds for BCLAF1 Gene

No Compound Related Data Available

Transcripts for BCLAF1 Gene

Unigene Clusters for BCLAF1 Gene

BCL2-associated transcription factor 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCLAF1 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13a · 13b · 13c ^
SP1: - - -
SP2: - - -
SP3: - - -
SP4: - - - - -
SP5: -
SP6:
SP7: -
SP8: -
SP9:
SP10: - -
SP11:
SP12:
SP13:
SP14:

ExUns: 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19a · 19b
SP1:
SP2: - -
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11: -
SP12:
SP13:
SP14:

Relevant External Links for BCLAF1 Gene

GeneLoc Exon Structure for
BCLAF1
ECgene alternative splicing isoforms for
BCLAF1

Expression for BCLAF1 Gene

mRNA expression in normal human tissues for BCLAF1 Gene

Protein differential expression in normal tissues from HIPED for BCLAF1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (8.1) and Fetal testis (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for BCLAF1 Gene



SOURCE GeneReport for Unigene cluster for BCLAF1 Gene Hs.486542

mRNA Expression by UniProt/SwissProt for BCLAF1 Gene

Q9NYF8-BCLF1_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expression patterns with BCLAF1: view

Protein tissue co-expression partners for BCLAF1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for BCLAF1 Gene

Orthologs for BCLAF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BCLAF1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia BCLAF1 35
  • 96.07 (n)
  • 98.15 (a)
BCLAF1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BCLAF1 35
  • 96.69 (n)
  • 98.5 (a)
BCLAF1 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bclaf1 35
  • 92.08 (n)
  • 96.29 (a)
Bclaf1 16
Bclaf1 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia BCLAF1 35
  • 99.75 (n)
  • 99.89 (a)
BCLAF1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bclaf1 35
  • 91.59 (n)
  • 95.95 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 84 (a)
OneToMany
-- 36
  • 91 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia BCLAF1 36
  • 93 (a)
OneToOne
chicken
(Gallus gallus)
Aves BCLAF1 35
  • 86.6 (n)
  • 90.36 (a)
BCLAF1 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia BCLAF1 36
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bclaf1 35
  • 64.09 (n)
  • 54.43 (a)
Str.20167 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.24564 35
Species with no ortholog for BCLAF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for BCLAF1 Gene

ENSEMBL:
Gene Tree for BCLAF1 (if available)
TreeFam:
Gene Tree for BCLAF1 (if available)

Paralogs for BCLAF1 Gene

Paralogs for BCLAF1 Gene

Pseudogenes.org Pseudogenes for BCLAF1 Gene

genes like me logo Genes that share paralogs with BCLAF1: view

Variants for BCLAF1 Gene

Sequence variations from dbSNP and Humsavar for BCLAF1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs6940018 - 136,278,255(+) CACCG(C/G)ATGTG nc-transcript-variant, reference, missense
rs1967446 - 136,276,150(+) TTTAT(A/C)ATTTT intron-variant, nc-transcript-variant, reference, missense
rs1967445 - 136,276,143(+) CTTTA(A/G/T)GTTTA intron-variant, nc-transcript-variant, reference, missense
rs7381749 - 136,273,154(+) GCTCG(C/T)TTAGG nc-transcript-variant, reference, missense
rs34541670 - 136,261,399(-) GAGGG(C/T)GCTTT nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for BCLAF1 Gene

Variant ID Type Subtype PubMed ID
esv2732746 CNV Deletion 23290073
esv2732747 CNV Deletion 23290073
esv2673118 CNV Deletion 23128226
esv9082 CNV Loss 19470904
esv2732748 CNV Deletion 23290073
esv2732749 CNV Deletion 23290073
esv1925105 CNV Deletion 18987734
esv6857 CNV Loss 19470904
esv2732751 CNV Deletion 23290073
esv2732752 CNV Deletion 23290073
esv2732753 CNV Deletion 23290073
esv990963 CNV Deletion 20482838
esv2063708 CNV Deletion 18987734
dgv1063e201 CNV Deletion 23290073
dgv1064e201 CNV Deletion 23290073
dgv1065e201 CNV Deletion 23290073
esv2161601 CNV Deletion 18987734
esv4525 CNV Deletion 18987735

Variation tolerance for BCLAF1 Gene

Residual Variation Intolerance Score: 99.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.75; 93.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BCLAF1 Gene

HapMap Linkage Disequilibrium report
BCLAF1
Human Gene Mutation Database (HGMD)
BCLAF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BCLAF1 Gene

Disorders for BCLAF1 Gene

MalaCards: The human disease database

(4) MalaCards diseases for BCLAF1 Gene - From: DISEASES and GeneCards

- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for BCLAF1

Genetic Association Database (GAD)
BCLAF1
Human Genome Epidemiology (HuGE) Navigator
BCLAF1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BCLAF1
genes like me logo Genes that share disorders with BCLAF1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for BCLAF1 Gene

Publications for BCLAF1 Gene

  1. Btf, a novel death-promoting transcriptional repressor that interacts with Bcl-2-related proteins. (PMID: 10330179) Kasof G.M. … White E. (Mol. Cell. Biol. 1999) 2 3 4 67
  2. Direct binding of nuclear membrane protein MAN1 to emerin in vitro and two modes of binding to barrier-to-autointegration factor. (PMID: 15681850) Mansharamani M. … Wilson K.L. (J. Biol. Chem. 2005) 3 23
  3. Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 8724849) Nagase T. … Nomura N. (DNA Res. 1996) 2 3
  4. Luzp4 defines a new mRNA export pathway in cancer cells. (PMID: 25662211) Viphakone N. … Wilson S.A. (Nucleic Acids Res. 2015) 3
  5. Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt. (PMID: 25737280) Murn J. … Shi Y. (Genes Dev. 2015) 3

Products for BCLAF1 Gene

Sources for BCLAF1 Gene

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