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Aliases for BCL9L Gene

Aliases for BCL9L Gene

  • B-Cell CLL/Lymphoma 9 Like 2 3
  • B-Cell Lymphoma 9-Like Protein 3 4
  • BCL9-Like Protein 3 4
  • Protein BCL9-2 3 4
  • DLNB11 3 4
  • Nuclear Co-Factor Of Beta-Catenin Signalling 3
  • B-Cell CLL/Lymphoma 9-Like Protein 3
  • B-Cell CLL/Lymphoma 9-Like 5
  • BCL9-2 3

External Ids for BCL9L Gene

Previous GeneCards Identifiers for BCL9L Gene

  • GC11M118304
  • GC11M118272
  • GC11M118766
  • GC11M114706

Summaries for BCL9L Gene

GeneCards Summary for BCL9L Gene

BCL9L (B-Cell CLL/Lymphoma 9 Like) is a Protein Coding gene. Among its related pathways are Signaling by Wnt and Signaling by GPCR. GO annotations related to this gene include transcription coactivator activity and beta-catenin binding. An important paralog of this gene is BCL9.

UniProtKB/Swiss-Prot for BCL9L Gene

  • Transcriptional regulator that acts as an activator. Promotes beta-catenin transcriptional activity. Plays a role in tumorigenesis. Enhances the neoplastic transforming activity of CTNNB1 (By similarity).

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCL9L Gene

Genomics for BCL9L Gene

Regulatory Elements for BCL9L Gene

Enhancers for BCL9L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G118906 2.1 FANTOM5 Ensembl ENCODE dbSUPER 20 +6.8 6826 24.6 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC BCL9L CCDC84 CXCR5 DPAGT1 HMBS FOXR1 ENSG00000222529 C2CD2L ENSG00000254909 RNF26
GH11G119167 1.1 ENCODE 34.1 -243.3 -243311 2.8 PKNOX1 ARNT WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF302 BCL9L IFT46 ENSG00000254909 UBE4A RPL23AP64 ARCN1 HINFP DDX6 ENSG00000254428 ENSG00000272186
GH11G119090 1.7 Ensembl ENCODE dbSUPER 15.2 -168.1 -168054 5.9 CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 HINFP ARCN1 RNF26 ENSG00000254909 C2CD2L BCL9L RPL23AP64 UBE4A RPS25 IFT46
GH11G119015 1.1 ENCODE 22.3 -92.4 -92443 4.6 HDGF PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 TRAPPC4 BCL9L ARCN1 ENSG00000254909 UBE4A RPL23AP64 ENSG00000254428 ENSG00000222529 FOXR1 UPK2
GH11G118238 2 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +685.1 685057 5.1 PKNOX1 ARNT SIN3A YY1 ZNF766 ZNF207 FOS SP5 ZHX2 JUNB JAML MPZL3 ENSG00000254909 ENSG00000254428 RPL23AP64 UBE4A CD3E IL10RA BCL9L ARCN1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BCL9L on UCSC Golden Path with GeneCards custom track

Promoters for BCL9L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000266130 618 2401 HDGF PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 ZBTB7B SLC30A9 ZNF207 ZNF143

Genomic Location for BCL9L Gene

Chromosome:
11
Start:
118,893,875 bp from pter
End:
118,925,618 bp from pter
Size:
31,744 bases
Orientation:
Minus strand

Genomic View for BCL9L Gene

Genes around BCL9L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCL9L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCL9L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCL9L Gene

Proteins for BCL9L Gene

  • Protein details for BCL9L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UU0-BCL9L_HUMAN
    Recommended name:
    B-cell CLL/lymphoma 9-like protein
    Protein Accession:
    Q86UU0
    Secondary Accessions:
    • A1A4C1
    • Q67FY1
    • Q6ZWJ0
    • Q6ZWK2

    Protein attributes for BCL9L Gene

    Size:
    1499 amino acids
    Molecular mass:
    157129 Da
    Quaternary structure:
    • Found in a complex with CDC73; CTNNB1 and PYGO1. Interacts with CTNNB1.
    SequenceCaution:
    • Sequence=AAH33257.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC85500.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC85512.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for BCL9L Gene

    Alternative splice isoforms for BCL9L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BCL9L Gene

Post-translational modifications for BCL9L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for BCL9L (Bcl-9L)

No data available for DME Specific Peptides for BCL9L Gene

Domains & Families for BCL9L Gene

Protein Domains for BCL9L Gene

Suggested Antigen Peptide Sequences for BCL9L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86UU0

UniProtKB/Swiss-Prot:

BCL9L_HUMAN :
  • Tne C-terminal domain is important for its transactivation activity.
  • Belongs to the BCL9 family.
Domain:
  • Tne C-terminal domain is important for its transactivation activity.
Family:
  • Belongs to the BCL9 family.
genes like me logo Genes that share domains with BCL9L: view

No data available for Gene Families for BCL9L Gene

Function for BCL9L Gene

Molecular function for BCL9L Gene

UniProtKB/Swiss-Prot Function:
Transcriptional regulator that acts as an activator. Promotes beta-catenin transcriptional activity. Plays a role in tumorigenesis. Enhances the neoplastic transforming activity of CTNNB1 (By similarity).

Gene Ontology (GO) - Molecular Function for BCL9L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003713 transcription coactivator activity NAS 19328798
GO:0008013 beta-catenin binding IDA 15574752
genes like me logo Genes that share ontologies with BCL9L: view
genes like me logo Genes that share phenotypes with BCL9L: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for BCL9L Gene

Localization for BCL9L Gene

Subcellular locations from UniProtKB/Swiss-Prot for BCL9L Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BCL9L gene
Compartment Confidence
nucleus 5
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for BCL9L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IC,IDA 15574752
GO:0005654 nucleoplasm TAS,IDA --
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with BCL9L: view

Pathways & Interactions for BCL9L Gene

genes like me logo Genes that share pathways with BCL9L: view

Gene Ontology (GO) - Biological Process for BCL9L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0010718 positive regulation of epithelial to mesenchymal transition IMP 19328798
GO:0022604 regulation of cell morphogenesis IMP 19328798
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IMP 19328798
genes like me logo Genes that share ontologies with BCL9L: view

No data available for SIGNOR curated interactions for BCL9L Gene

Transcripts for BCL9L Gene

Unigene Clusters for BCL9L Gene

B-cell CLL/lymphoma 9-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BCL9L Gene

No ASD Table

Relevant External Links for BCL9L Gene

GeneLoc Exon Structure for
BCL9L
ECgene alternative splicing isoforms for
BCL9L

Expression for BCL9L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BCL9L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for BCL9L Gene

This gene is overexpressed in Blymphocyte (28.2), Cervix (12.4), Frontal cortex (8.3), and Fetal gut (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for BCL9L Gene



NURSA nuclear receptor signaling pathways regulating expression of BCL9L Gene:

BCL9L

SOURCE GeneReport for Unigene cluster for BCL9L Gene:

Hs.414740

mRNA Expression by UniProt/SwissProt for BCL9L Gene:

Q86UU0-BCL9L_HUMAN
Tissue specificity: Expressed in breast, ductal and invasive ductal carcinomas of the breast, sporadic colorectal adenomas and carcinomas (at protein level). Expressed in fetal brain. Expressed in lung, amygdala, eye, prostate, pancreatic and prostate cancers, head and neck tumors and embryonal tumor.

Evidence on tissue expression from TISSUES for BCL9L Gene

  • Nervous system(4.3)
  • Liver(4.2)
  • Adrenal gland(3.2)
  • Intestine(2.4)
  • Lung(2.2)
genes like me logo Genes that share expression patterns with BCL9L: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCL9L Gene

Orthologs for BCL9L Gene

This gene was present in the common ancestor of chordates.

Orthologs for BCL9L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BCL9L 34 35
  • 99.32 (n)
cow
(Bos Taurus)
Mammalia BCL9L 34 35
  • 92.22 (n)
dog
(Canis familiaris)
Mammalia BCL9L 34 35
  • 91.84 (n)
mouse
(Mus musculus)
Mammalia Bcl9l 34 16 35
  • 89.11 (n)
rat
(Rattus norvegicus)
Mammalia Bcl9l 34
  • 88.89 (n)
oppossum
(Monodelphis domestica)
Mammalia BCL9L 35
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves BCL9L 34 35
  • 72.74 (n)
lizard
(Anolis carolinensis)
Reptilia BCL9L 35
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bcl9l 34
  • 59.47 (n)
zebrafish
(Danio rerio)
Actinopterygii bcl9l 34 35
  • 57.01 (n)
Species where no ortholog for BCL9L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BCL9L Gene

ENSEMBL:
Gene Tree for BCL9L (if available)
TreeFam:
Gene Tree for BCL9L (if available)

Paralogs for BCL9L Gene

Paralogs for BCL9L Gene

genes like me logo Genes that share paralogs with BCL9L: view

Variants for BCL9L Gene

Sequence variations from dbSNP and Humsavar for BCL9L Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000049744 -- 118,920,252(+) CATGC(A/G)CTAAC intron-variant
rs1000198472 -- 118,897,469(+) ACACA(G/T)GCACG downstream-variant-500B, utr-variant-3-prime
rs1000223467 -- 118,902,818(+) TGGCG(C/G)CGGCG reference, missense
rs1000374835 -- 118,902,500(+) GTCTC(G/T)CAGCG reference, synonymous-codon
rs1000398096 -- 118,908,152(+) AATAC(C/T)GGAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BCL9L Gene

Variant ID Type Subtype PubMed ID
dgv732n106 CNV deletion 24896259
nsv952743 CNV deletion 24416366

Variation tolerance for BCL9L Gene

Residual Variation Intolerance Score: 2.43% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.79; 73.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BCL9L Gene

Human Gene Mutation Database (HGMD)
BCL9L
SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCL9L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BCL9L Gene

Disorders for BCL9L Gene

Relevant External Links for BCL9L

Genetic Association Database (GAD)
BCL9L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BCL9L

No disorders were found for BCL9L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCL9L Gene

Publications for BCL9L Gene

  1. Identification and characterization of human BCL9L gene and mouse Bcl9l gene in silico. (PMID: 12964048) Katoh M. … Katoh M. (Int. J. Mol. Med. 2003) 2 3 4 22 64
  2. BCL9-2 binds Arm/beta-catenin in a Tyr142-independent manner and requires Pygopus for its function in Wg/Wnt signaling. (PMID: 17113272) Hoffmans R. … Basler K. (Mech. Dev. 2007) 3 4 22 64
  3. Crystal structure of a beta-catenin/BCL9/Tcf4 complex. (PMID: 17052462) Sampietro J. … Xu W. (Mol. Cell 2006) 3 4 64
  4. Essential role of BCL9-2 in the switch between beta-catenin's adhesive and transcriptional functions. (PMID: 15371335) Brembeck F.H. … Birchmeier W. (Genes Dev. 2004) 3 4 64
  5. SR protein kinases promote splicing of nonconsensus introns. (PMID: 26167880) Lipp J.J. … Guthrie C. (Nat. Struct. Mol. Biol. 2015) 3 64

Products for BCL9L Gene

Sources for BCL9L Gene

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