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Aliases for BCL6-AS1 Gene

Subcategory (RNA class) for BCL6-AS1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for BCL6-AS1 Gene

  • BCL6 Antisense 1 2 3
  • BCL6 Antisense RNA 1 2 3
  • Lnc-RP11-211G3.3.1-1 3
  • AC072022.1 5

External Ids for BCL6-AS1 Gene

Summaries for BCL6-AS1 Gene

GeneCards Summary for BCL6-AS1 Gene

BCL6-AS1 (BCL6 Antisense 1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for BCL6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCL6-AS1 Gene

Genomics for BCL6-AS1 Gene

Regulatory Elements for BCL6-AS1 Gene

Enhancers for BCL6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H187954 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +211.6 211569 2.3 TBP BRCA1 RAD21 RARA RFX5 YY1 SMARCC2 RCOR1 FOS SMARCC1 BCL6 BCL6-AS1 LPP RTP2 LOC105374265 LINC01991
GH03H187985 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +243.4 243423 2.7 KLF1 JUN MAX ZMYM3 RAD21 RFX5 ZKSCAN1 FOSL1 ZFHX2 ZNF316 BCL6 LPP BCL6-AS1 LINC01991 ENSG00000236412
GH03H188163 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +422.1 422056 3.6 CTCF FOXA2 ESRRA MAX RAD21 RARA ZNF121 CTBP1 GATA3 FOSL2 BCL6 BCL6-AS1 TPRG1-AS1 LPP-AS2 FLJ42393
GH03H188170 1.5 Ensembl ENCODE dbSUPER 9.9 +427.7 427732 1.8 FOXA2 ATF1 MLX ARID4B YY1 SLC30A9 FOS ATF7 SP5 MXD4 BCL6 BCL6-AS1 ENSG00000234238 SST LOC100131635 FLJ42393 LPP-AS2
GH03H188281 1.4 Ensembl ENCODE dbSUPER 10.6 +541.1 541092 5.8 ELF3 PKNOX1 FOXA2 NFIB ARID4B FEZF1 RAD21 RARA YY1 ZNF121 BCL6 BCL6-AS1 LPP MIR28 FLJ42393 LPP-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BCL6-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for BCL6-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000163361 214 6201 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Locations for BCL6-AS1 Gene

Genomic Locations for BCL6-AS1 Gene
chr3:187,743,686-187,746,028
(GRCh38/hg38)
Size:
2,343 bases
Orientation:
Plus strand
chr3:187,461,474-187,463,208
(GRCh37/hg19)

Genomic View for BCL6-AS1 Gene

Genes around BCL6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for BCL6-AS1 Gene

Proteins for BCL6-AS1 Gene

  • Protein details for BCL6-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUM6
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A1B0GUM6

    Protein attributes for BCL6-AS1 Gene

    Size:
    38 amino acids
    Molecular mass:
    3317 Da
    Quaternary structure:
    No Data Available

neXtProt entry for BCL6-AS1 Gene

Post-translational modifications for BCL6-AS1 Gene

No Post-translational modifications

Other Protein References for BCL6-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for BCL6-AS1 Gene

Domains & Families for BCL6-AS1 Gene

Protein Domains for BCL6-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BCL6-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCL6-AS1 Gene

Function for BCL6-AS1 Gene

Phenotypes From GWAS Catalog for BCL6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCL6-AS1 Gene

Localization for BCL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCL6-AS1 Gene

Pathways & Interactions for BCL6-AS1 Gene

SuperPathways for BCL6-AS1 Gene

No Data Available

Interacting Proteins for BCL6-AS1 Gene

Gene Ontology (GO) - Biological Process for BCL6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCL6-AS1 Gene

Drugs & Compounds for BCL6-AS1 Gene

No Compound Related Data Available

Transcripts for BCL6-AS1 Gene

mRNA/cDNA for BCL6-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for BCL6-AS1 Gene

No ASD Table

Relevant External Links for BCL6-AS1 Gene

GeneLoc Exon Structure for
BCL6-AS1
ECgene alternative splicing isoforms for
BCL6-AS1

Expression for BCL6-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCL6-AS1 Gene

Orthologs for BCL6-AS1 Gene

Evolution for BCL6-AS1 Gene

ENSEMBL:
Gene Tree for BCL6-AS1 (if available)
TreeFam:
Gene Tree for BCL6-AS1 (if available)

No data available for Orthologs for BCL6-AS1 Gene

Paralogs for BCL6-AS1 Gene

No data available for Paralogs for BCL6-AS1 Gene

Variants for BCL6-AS1 Gene

Relevant External Links for BCL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for BCL6-AS1 Gene

Disorders for BCL6-AS1 Gene

No disorders were found for BCL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for BCL6-AS1 Gene

Publications for BCL6-AS1 Gene

  1. Convergent BCL6 and lncRNA promoters demarcate the major breakpoint region for BCL6 translocations. (PMID: 26276666) Lu Z … Lieber MR (Blood 2015) 2 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for BCL6-AS1 Gene

Sources for BCL6-AS1 Gene

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