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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

BCL6 Gene

protein-coding GIFtS: 67
GCID: GC03M187439

B-cell CLL/lymphoma 6

(Previous name: zinc finger protein 51 )
(Previous symbol: ZNF51)

Explore 74 diseases affiliated with
BCL6 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
B-Cell CLL/Lymphoma 6¹ ²		BCL-5² ³
Zinc Finger Protein 51¹ ² ³		BCL-6² ³
BCL5¹ ² ³		B-Cell Lymphoma 5 Protein² ³
LAZ3¹ ² ³		B-Cell Lymphoma 6 Protein²
ZBTB27¹ ² ³		B-Cell Lymphoma 6 Protein Transcript²
ZNF51¹ ² ³		Cys-His2 Zinc Finger Transcription Factor²
BCL6A¹ ²		Lymphoma-Associated Zinc Finger Gene On Chromosome 3²
Protein LAZ-3² ³		Zinc Finger Transcription Factor BCL6S²
Zinc Finger And BTB Domain-Containing Protein 27² ³

External Ids:	HGNC: 1001¹	Entrez Gene: 604²	Ensembl: ENSG00000113916⁷	OMIM: 109565⁵	UniProtKB: P41182³

Export aliases for BCL6 gene to outside databases

Previous GC identifers: GC03M184254 GC03M188700 GC03M188841 GC03M188760 GC03M188921 GC03M184843

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for BCL6:

The protein encoded by this gene is a zinc finger transcription factor and contains an N-terminal POZ domain. This

protein acts as a sequence-specific repressor of transcription, and has been shown to modulate the transcription of

START-dependent IL-4 responses of B cells. This protein can interact with a variety of POZ-containing proteins that

function as transcription corepressors. This gene is found to be frequently translocated and hypermutated in diffuse

large-cell lymphoma (DLCL), and may be involved in the pathogenesis of DLCL. Alternatively spliced transcript variants

encoding different protein isoforms have been found for this gene. (provided by RefSeq, Sep 2008)

UniProtKB/Swiss-Prot: BCL6_HUMAN, P41182

Function: Transcriptional repressor which is required for germinal center formation and antibody affinity maturation.

Probably plays an important role in lymphomagenesis

Gene Wiki entry for BCL6

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000003.11 NC_018914.1 NT_005612.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the BCL6 gene promoter:
AP-1 STAT5A
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: BCL6 promoter sequence

Search SABiosciences Chromatin IP Primers for BCL6

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BCL6

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q27 Ensembl cytogenetic band: 3q27.3 HGNC cytogenetic band: 3q27

BCL6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BCL6 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M187439: view genomic region (about GC identifiers)

Start:	187,439,165 bp from pter	End:	187,463,515 bp from pter
Size:	24,351 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: BCL6_HUMAN, P41182 (See protein sequence)

Recommended Name: B-cell lymphoma 6 protein

Size: 706 amino acids; 78846 Da

Subunit: Homodimer. Interacts (via BTB domain) with BCOR; the interaction is direct. Interacts (via BTB domain) with

NCOR2; the interaction is direct. Interacts with ZBTB7 and BCL6B (By similarity). Interacts with the catalytic domain

of HDAC9

Subcellular location: Nucleus (By similarity)

6/10 PDB 3D structures from and Proteopedia for BCL6 (see all 10):

1R28 (3D)

1R29 (3D)

1R2B (3D)

2EN2 (3D)

2EOS (3D)

2LCE (3D)

Secondary accessions: A7E241 B8PSA7 D3DNV5

Alternative splicing: 2 isoforms: P41182-1 P41182-2 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for BCL6: NX_P41182

Post-translational modifications:

Phosphorylated by MAPK1 in response to antigen receptor activation at Ser-333 and Ser-343. Phosphorylation induces its

degradation by ubiquitin/proteasome pathway¹

Polyubiquitinated. Polyubiquitination leads to degradation by the proteasome¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P41182

BCL6 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_001124317.1 NP_001128210.1 NP_001697.2

ENSEMBL proteins:

ENSP00000384371 ENSP00000398014 ENSP00000232014 ENSP00000413122 ENSP00000415574

ENSP00000414455

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	--
GO:0005657	colocalizes with replication fork	IDA	10490843
GO:0005730	NOT nucleolus	IDA	--

BCL6 for ontologies About GeneDecksing

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	Browse ELISAs and CLIAs at Uscn

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

BCL6 for domains About GeneDecksing

5/6 InterPro domains/families (see all 6):

IPR015880 Znf_C2H2-like

IPR011333 BTB/POZ_fold

IPR013087 Znf_C2H2/integrase_DNA-bd

IPR013069 BTB_POZ

IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry P41182

ProtoNet protein and cluster: P41182

2 Blocks protein families:

IPB000210 BTB/POZ domain

IPB007086 C2H2-type zinc finger signature

UniProtKB/Swiss-Prot: BCL6_HUMAN, P41182

Domain: The BTB domain mediates homodimerization. Its dimer interface mediates peptide binding such as to corepressors

BCOR and NCOR2

Similarity: Contains 1 BTB (POZ) domain

Similarity: Contains 6 C2H2-type zinc fingers

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: BCL6_HUMAN, P41182

Function: Transcriptional repressor which is required for germinal center formation and antibody affinity maturation.

Probably plays an important role in lymphomagenesis

Induction: Down-regulated during maturation of dendritic cells by selective stimuli such as bacterial

lipopolysaccharides (LPS), CD40LG and zymosan

Genatlas biochemistry entry for BCL6:

breakpoint in B cell non Hodgkin lymphoma,in translocations t(3;14),t(2;3),t(3;22),t(3;4),t(3;11) and others,same as

LAZ3

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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BCL6

Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003677	DNA binding	--	--
GO:0003682	chromatin binding	IDA	12097386
GO:0003700	sequence-specific DNA binding transcription factor activity	IMP	15577913
GO:0005515	protein binding	IPI	16147992
GO:0008270	zinc ion binding	IEA	--

BCL6 for ontologies About GeneDecksing

3 GenomeRNAi human phenotypes for BCL6:

Increased cell death HMECs cel

Increased homologous recombina

Synthetic lethal with c-Myc af

Animal Models:
Mouse knock-outs for BCL6: Bcl6^tm1Sdt Bcl6^tm1Rdf Bcl6^tm1Tto Bcl6^tm2Rdf
12 MGI mutant phenotypes (inferred from 8 alleles) (MGI details for Bcl6):

cardiovascular system	cellular	growth/size	hematopoietic system	homeostasis/metabolism
immune system	liver/biliary system	mortality/aging	muscle	no phenotypic analysis
reproductive system	respiratory system

BCL6 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/9 super-pathways (see all 9) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Immune response BCR pathway

Immune response BCR pathway

1.00

Immune response_BCR pathway

0.99

Lymphocyte Signaling

Lymphocyte Signaling

1.00

Selected targets of p53

Selected targets of p53

1.00

B Cell Receptor Signaling Pathway

B Cell Receptor Signaling Pathway

1.00

Signaling events mediated by HDAC Class II

Signaling events mediated by HDAC Class II

1.00

Pathway sources
See GeneCards unified pathways
Show all pathways

2 EMD Millipore Pathways for BCL6

	Immune response BCR pathway
	Selected targets of p53

1 Cell Signaling Technology (CST) Pathway for BCL6

Lymphocyte Signaling

1 GeneGo (Thomson Reuters) Pathway for BCL6

Immune response BCR pathway

5/6 BioSystems Pathways for BCL6 (see all 6)

	DNA damage response (only ATM dependent)
	B Cell Receptor Signaling Pathway
	Signaling events mediated by HDAC Class II
	FoxO family signaling
	IL4-mediated signaling events

BCL6 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for BCL6

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/120 Interacting proteins for BCL6 (P41182^{1, 2, 3} ENSP00000232014⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 120)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
HDAC4	P56524¹^,³, ENSP00000264606⁴	EBI-765407,EBI-308629 I2D: score=3 STRING: ENSP00000264606
HDAC9	Q9UKV0¹^,³, ENSP00000408617⁴	EBI-765407,EBI-765444 I2D: score=3 STRING: ENSP00000408617
ZMYND8	Q9ULU4¹^,³, ENSP00000418210⁴	EBI-765407,EBI-765834 I2D: score=3 STRING: ENSP00000418210
ARHGAP35	Q9NRY4³, ENSP00000385720⁴	I2D: score=3 STRING: ENSP00000385720
BCL6B	Q8N143³, ENSP00000293805⁴	I2D: score=3 STRING: ENSP00000293805

About this table

Gene Ontology (GO): 5/35 biological process terms (GO ID links to tree view) (see all 35): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000060	protein import into nucleus, translocation	IGI	11821949
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	IDA	11929873
GO:0000902	cell morphogenesis	IEA	--
GO:0001953	negative regulation of cell-matrix adhesion	IEA	--
GO:0002467	germinal center formation	IEA	--

BCL6 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

BCL6 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for BCL6
10/17 Novoseek chemical compound relationships for BCL6 gene (see all 17) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
(h,g)-a-l	73.3	3	17296566 (1), 17038524 (1), 19234720 (1)
cytidine	56.1	4	16380510 (1), 16895557 (1), 15188366 (1), 12818155 (1)
zinc	51.3	57	11854457 (3), 9135990 (3), 10757802 (2), 20175752 (2) (see all 35)
rituximab	35.6	8	19797725 (3), 19786664 (1), 16449523 (1)
paraffin	33.4	12	10843287 (2), 15723651 (1), 9209651 (1), 10208461 (1) (see all 9)
vincristine	32.1	2	19786664 (1), 16449523 (1)
cyclophosphamide	18.8	2	19786664 (1), 16449523 (1)
doxorubicin	9.46	2	19786664 (1), 16449523 (1)
estrogen	5.29	5	19824433 (1), 12165517 (1)
serine	3.76	2	12881702 (1), 9188861 (1)

Search CenterWatch for drugs/clinical trials and news about BCL6

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for BCL6 gene (4 alternative transcripts):

NM_001130845.1 NM_001134738.1 NM_001706.4 NM_138931.1

Unigene Cluster for BCL6:

B-cell CLL/lymphoma 6

Hs.478588 [show with all ESTs]

Unigene Representative Sequence: NM_001130845

10 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000406870(uc011bsf.1 uc003frq.2) ENST00000419510(uc003frp.3 uc010hza.2)

ENST00000232014 ENST00000450123 ENST00000479110 ENST00000430339 ENST00000480458

ENST00000438077 ENST00000470319 ENST00000496823

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Additional cDNA sequence:

AK090890.1 AK304325.1 AK308162.1 AL713713.1 AL832990.1 BC142705.1 BC146796.1 BC150184.1

EU139066.1 EU883531.1 U00115.1 Z21943.1

15 DOTS entries:

DT.99956826 DT.99978801 DT.454834 DT.212094 DT.91757283 DT.100817094 DT.120907804 DT.120907845

DT.443706 DT.100662547 DT.100662593 DT.100735246 DT.87016782 DT.95345389 DT.120907853

24/195 AceView cDNA sequences (see all 195):

BF924437 AA447608 AU279518 AW629110 AA448107 W81333 S67779 T27711

NM_138931 BQ230532 AA371071 AI362233 AI080223 AW302390 AI362271 BU428597

BQ722826 AI620274 AW665543 W79813 CA405856 BM454297 CA405981 BQ716058

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for BCL6 About this scheme

ExUns:	1a	·	1b	^	2a	·	2b	^	3	^	4a	·	4b	^	5a	·	5b	^	6	^	7	^	8	^	9	^	10a	·	10b
SP1:							-
SP2:							-				-
SP3:																					-
SP4:

ECgene alternative splicing isoforms for BCL6

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

BCL6 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTTGTGTTAT

About this image

BCL6 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

2 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Bone

Zeugopod Epiphyseal End

Chondrocytes

Bone, Cartilage

Yolk Sac

Definitive Yolk Sac

Definitive Hematopoietic Stem Cells

Blood

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

CyT49 (Embryonic Stem Cell)

Early Embryo, Inner Cell Mass

See BCL6 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for BCL6

SOURCE GeneReport for Unigene cluster: Hs.478588

UniProtKB/Swiss-Prot: BCL6_HUMAN, P41182

Tissue specificity: Expressed in germinal center T and B-cells and in primary immature dendritic cells

SABiosciences Expression via Pathway-Focused PCR Arrays including BCL6 (see all 6):

Th1/Th2 Response in human mouse rat

Lymphoma in human mouse rat

Inflammatory Response & Autoimmunity in human mouse rat

Apoptosis 384HT in human mouse rat

Inflammatory Response & Autoimmunity 384HT in human mouse rat

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for BCL6 gene from 3/12 species (see all 12) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	BCL6¹	B-cell CLL/lymphoma 6	77.29(n) 80.09(a)		424912 NM_001012930.1 NP_001012948.1
lizard (Anolis carolinensis)	Reptilia	BCL6⁶	--	77(a)	1 ↔ 1	GL343905.1(120234-137809)
zebrafish (Danio rerio)	Actinopterygii	zgc73162²	B-cell lymphoma 6 protein	76.5(n)		393707 BC059515.1

ENSEMBL Gene Tree for BCL6 (if available)
TreeFam Gene Tree for BCL6 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for BCL6 gene

BCL6B²

18/110 SIMAP similar genes for BCL6 using alignment to 8 protein entries: BCL6_HUMAN (see all proteins) (see all similar genes):

BACH2 ZNF ZNF818P BACH1 KLHL3 DKFZp434J0650

ZBTB21 ZNF78L1 ZNF883 KLHL2 ZNF410 ZNF55

HIC1 ZBTB3 kr-znf3 KLHL32 ZBTB17 ZBTB49

BCL6 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs113177292^1,2	C,	--	187438668(+)	`CTGAGG/ATCAGG`	4	--	int¹ ds500¹		1		NA	2
rs146638512^1,2		--	187438679(+)	`AGTTCA/GAGACC`	4	--	ds500¹ int¹		0	--	--	--	--
rs139834390^1,2		--	187438814(+)	`GAGGCA/GGAGGT`	4	--	ds500¹ int¹		0	--	--	--	--
rs4686466^1,2	C,F,A,H,	--	187438826(+)	`GCAGTG/AAGCTG`	4	--	int¹ ds500¹		12		NA WA CSA	258
rs149824535^1,2		--	187438837(+)	`AGATCC/TGAGTC`	4	--	ds500¹ int¹		0	--	--	--	--
rs116559018^1,2	F,	--	187438881(+)	`AAAACA/GAAAGT`	4	--	ds500¹ int¹		1		NA	120
rs55934024^1,2	C,	--	187438897(+)	`GCCTAG/CAGCTG`	4	--	ds500¹ int¹		4		WA NA EA	360
rs79323238^1,2	F,	--	187438936(+)	`CTGAGC/GTCTTC`	4	--	int¹ ds500¹		1		WA	118
rs149054757^1,2		--	187439051(+)	`GAGAAA/TGCAGC`	4	--	ds500¹ int¹		0	--	--	--	--
rs28477220^1,2	C,F,	--	187439105(+)	`GGAGCT/CGAGGG`	4	--	ds500¹ int¹		8		NA WA CSA EA	367

HapMap Linkage Disequilibrium report for BCL6 (187439165 - 187463515 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for BCL6: --

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BCL6

DNA2.0 Custom Variant and Variant Library Synthesis for BCL6

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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BCL6 for disorders About GeneDecksing

OMIM gene information: 109565 OMIM disorders: --

UniProtKB/Swiss-Prot: BCL6_HUMAN, P41182

Note=Chromosomal aberrations involving BCL6 may be a cause of B-cell non-Hodgkin lymphoma. Translocation

t(3;14)(q27;q32); translocation t(3;22)(q27;q11) with immunoglobulin gene regions

Note=A chromosomal aberration involving BCL6 may be a cause of a form of B-cell leukemia. Translocation

t(3;11)(q27;q23) with POU2AF1/OBF1

Note=A chromosomal aberration involving BCL6 may be a cause of lymphoma. Translocation t(3;4)(q27;p11) with

ARHH/TTF

20/74 diseases for BCL6 (see all 74): About MalaCards

b-cell lymphomas marginal zone b-cell lymphoma central nervous system lymphoma splenic marginal zone lymphoma

b-cell non-hodgkin lymphoma anaplastic large cell lymphoma diffuse large b-cell lymphoma non-hodgkin lymphoma

lenz microphthalmia syndrome otitis media lymphoid interstitial pneumonia common variable immunodeficiency

malt lymphoma severe combined immunodeficiency lymphosarcoma primary effusion lymphoma

intraocular lymphoma hodgkin's lymphoma burkitt's lymphoma combined immunodeficiency

5 diseases from the University of Copenhagen DISEASES database for BCL6:

Lymphoma Reticulosarcoma Central nervous system lymphoma Testicular lymphoma

Leukemia

10/58 Novoseek disease relationships for BCL6 gene (see all 58) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
lymphoma b-cell	93.8	219	19797725 (6), 18925696 (5), 9283593 (4), 7742550 (3) (see all 99)
lymphoma follicular	90.4	76	18925696 (5), 18500267 (3), 14674895 (3), 10208461 (2) (see all 52)
lymphoma large cell diffuse	88.1	34	7639334 (3), 9648553 (2), 15998973 (2), 7895484 (1) (see all 25)
lymphoma	86.1	238	15375218 (5), 12399978 (5), 10626250 (4), 9044511 (3) (see all 99)
lymphoma non-hodgkins	81.6	87	7742550 (2), 10953971 (2), 16125304 (2), 7472775 (2) (see all 61)
burkitt lymphoma	76	20	16772123 (3), 9359519 (3), 20079013 (2), 16618762 (2) (see all 12)
ofcd syndrome	73.3	2	17517692 (1), 15770227 (1)
malt lymphoma	73.1	43	15153535 (4), 17122510 (3), 11120333 (3), 18166802 (3) (see all 15)
lymphoid neoplasm	71.4	3	9373196 (1), 8703825 (1), 9209377 (1)
lymphoma large cell	67	6	11840294 (1), 8703825 (1), 10396291 (1), 9209377 (1) (see all 6)

Genatlas disease: BCL6

B-cell,diffuse large-cell lymphoma,follicular lymphoma and mantel cell lymphoma,mucosa-associated lymphoid tissue non

Hodgkin lymphoma with translocations

t(3;14)(q27;q32),t(3;13)(q27;q14),t(2;3)(p12;q27),t(3;22)(q27;q11),t(3;4)(q27;p11),t(3;11)(q27;q23),t(3;6)(q27;p21.3),also

rearranged in some marginal zone B-cell lymphoma,mutated in human herpes-8 positive primary effusion lymphoma (PEL)

Genetic Association Database (GAD): BCL6
Human Genome Epidemiology (HuGE) Navigator: BCL6 (24 documents)
Tumor Gene Database (TGDB): BCL6

Export disorders for BCL6 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for BCL6 gene, integrated from 9 sources (see all 629):
(articles sorted by number of sources associating them with BCL6)

Utopia: connect your pdf to the dynamic
world of online information

Single nucleotide polymorphism in 5'-flanking region of BCL6 is not associated with increased risk of non-Hodgkin's lymphoma. (PubMed id 16125304)^{1, 4, 9} Susova S....Soucek P. (2006)
Clinical and biological relevance of single-nucleotide polymorphisms and acquired somatic mutations of the BCL6 first intron in follicular lymphoma. (PubMed id 16094416)^{1, 4, 9} Jardin F....Bastard C. (2005)
Alterations of a zinc finger-encoding gene, BCL-6, in diffuse large- cell lymphoma. (PubMed id 8235596)^{1, 2, 9} Ye B.H.... Dalla-Favera R. (1993)
Structure of the wild-type human BCL6 POZ domain. (PubMed id 19052359)^{1, 2, 9} Stead M.A....Wright S.C. (2008)
Mechanism of SMRT corepressor recruitment by the BCL6 BTB domain. (PubMed id 14690607)^{1, 2, 9} Ahmad K.F....Prive G.G. (2003)
A polymorphism in the BCL-6 gene is associated with follicle center lymphoma. (PubMed id 11911418)^{1, 4, 9} Lossos I.S....Levy R. (2001)
Antigen receptor signaling induces MAP kinase-mediated phosphorylation and degradation of the BCL-6 transcription factor. (PubMed id 9649500)^{1, 2, 9} Niu H.... Dalla-Favera R. (1998)
Gene involved in the 3q27 translocation associated with B-cell lymphoma, BCL5, encodes a Kruppel-like zinc-finger protein. (PubMed id 8274740)^{1, 2, 9} Miki T.... Aoki N. (1994)
Structure of a BCOR corepressor peptide in complex with the BCL6 BTB domain dimer. (PubMed id 18280243)^{1, 2} Ghetu A.F....Prive G.G. (2008)
Plastic downregulation of the transcriptional repressor BCL6 during maturation of human dendritic cells. (PubMed id 16455075)^{1, 2} Pantano S.... Natoli G. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 604	HGNC: 1001	AceView: BCL6	Ensembl:ENSG00000113916	euGenes: HUgn604
ECgene: BCL6	H-InvDB: BCL6

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for BCL6	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for BCL6	Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property for BCL6 gene
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Patent Information for BCL6 gene:
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B-cell CLL/lymphoma 6

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BCL6 Gene

B-cell CLL/lymphoma 6

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