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BCL2L15 Gene

protein-coding   GIFtS: 40
GCID: GC01M114419

BCL2-Like 15

(Previous name: chromosome 1 open reading frame 178)
(Previous symbol: C1orf178)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
BCL2-Like 151 2     Bcl-2-Like Protein 152
C1orf1781 2 3     bcl2-L-152
Chromosome 1 Open Reading Frame 1781     Pro-Apoptotic Bcl-2 Protein2
Bfk2     Bcl2-L-153

External Ids:    HGNC: 336241   Entrez Gene: 4406032   Ensembl: ENSG000001887617   UniProtKB: Q5TBC73   

Export aliases for BCL2L15 gene to outside databases

Previous GC identifers: GC01M114220 GC01M112277


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for BCL2L15 Gene:
BCL2L15 (BCL2-like 15) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NT_032977.10  NC_018912.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the BCL2L15 gene promoter:
         AML1a   GATA-3   HTF   Lmo2   RORalpha2   MEF-2A   PPAR-gamma1   FOXJ2 (long isoform)   PPAR-gamma2   aMEF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidBCL2L15 promoter sequence
   Search Chromatin IP Primers for BCL2L15

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat BCL2L15


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p13.2   Ensembl cytogenetic band:  1p13.2   HGNC cytogenetic band: 1p13.2

BCL2L15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
BCL2L15 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M114419:  view genomic region     (about GC identifiers)

Start:
114,419,436 bp from pter      End:
114,430,169 bp from pter
Size:
10,734 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: B2L15_HUMAN, Q5TBC7 (See protein sequence)
Recommended Name: Bcl-2-like protein 15  
Size: 163 amino acids; 17725 Da
Secondary accessions: A0PJY6 A8K074 I6LA82
Alternative splicing: 2 isoforms:  Q5TBC7-1   Q5TBC7-2   (Pro-apoptotic when overexpressed)

Explore the universe of human proteins at neXtProt for BCL2L15: NX_Q5TBC7

Explore proteomics data for BCL2L15 at MOPED


See BCL2L15 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001010922.1  
ENSEMBL proteins: 
 ENSP00000376992   ENSP00000376995   ENSP00000417458  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q5TBC7


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for BCL2L15
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytoskeleton2
cytosol2
nucleus2
extracellular1
mitochondrion1
peroxisome1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--
GO:0005829cytosol IEA--

Find genes that share ontologies with BCL2L15           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for BCL2L15
Interactions:

    Search GeneGlobe Interaction Network for BCL2L15

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006915apoptotic process IEA--

Find genes that share ontologies with BCL2L15           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for BCL2L15 (B2L15)

3 Novoseek inferred chemical compound relationships for BCL2L15 gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
lipid 0.165 1 18291090 (1)
oxygen 0 1 15601573 (1)
calcium 0 1 17371290 (1)



Find genes that share compounds with BCL2L15           About GenesLikeMe



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for BCL2L15 gene (4 alternative transcripts): 
NM_001029944.1  NM_001029945.1  NM_001029946.1  NM_001010922.2  

Unigene Cluster for BCL2L15:

BCL2-like 15
Hs.123106  [show with all ESTs]
Unigene Representative Sequence: NM_001010922
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000369580(uc001edw.3 uc001edx.3 uc001edy.3) ENST00000393316(uc001edz.1)
ENST00000488450 ENST00000393320 ENST00000471267 ENST00000486485
miRNA
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Selected qRT-PCR Assays for microRNAs that regulate BCL2L15 (see all 29):
hsa-miR-576-3p hsa-miR-607 hsa-miR-3607-3p hsa-miR-676 hsa-miR-125a-3p hsa-miR-3614-3p hsa-miR-216b hsa-miR-29b-1*
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  QuantiFast Probe-based Assays in human, mouse, rat BCL2L15

Additional mRNA sequence: 

AK026241.1 AK289439.1 AY265861.1 AY265862.1 AY265863.1 AY265864.1 BC127719.1 BC127720.1 
BC132904.1 BC132906.1 

6 DOTS entries:

DT.75100992  DT.70101895  DT.99961115  DT.305715  DT.97824568  DT.75128994 

Selected AceView cDNA sequences (see all 25):

BX091865 CB142909 AI821052 AI632962 AW004997 AW138724 AA594246 AW204165 
BU607853 AI821801 AI802637 AW137209 BX091267 AI821221 BM829833 AA877677 
CA312911 BF445012 AK026241 BM755890 CR749373 BX644415 BX483608 AA483638 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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BCL2L15 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TACATCGATA
BCL2L15 Expression
About this image


BCL2L15 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 
 Blood (Hematopoietic System)
         Proerythroblasts Hematopoietic Bone Marrow
BCL2L15 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

BCL2L15 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.123106
    Custom PCR Arrays for BCL2L15
Primer
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for BCL2L15 gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Bcl2l151 , 5 BCLl2-like 151, 5 77.91(n)1
71.17(a)1
  3 (45.52 cM)5
2296721  NM_001142959.11  NP_001136431.11 
 1038326015 
chicken
(Gallus gallus)
Aves BCL2L151 BCL2-like 15 55.94(n)
44.76(a)
  772088  XM_001233930.3  XP_001233931.1 


ENSEMBL Gene Tree for BCL2L15 (if available)
TreeFam Gene Tree for BCL2L15 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for BCL2L15 gene
1 SIMAP similar gene for BCL2L15 using alignment to 2 protein entries:     B2L15_HUMAN (see all proteins):
DKFZp779F1429

Find genes that share paralogs with BCL2L15           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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1 SNPs for BCL2L15    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 1 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs12173811,2,4
----see VAR_0314752 mis40--------

HapMap Linkage Disequilibrium report for BCL2L15 (114419436 - 114430169 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for BCL2L15:    About this table    
Variant IDTypeSubtypePubMed ID
esv23869CNV Loss19812545

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing BCL2L15
DNA2.0 Custom Variant and Variant Library Synthesis for BCL2L15

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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Find genes that share disorders with BCL2L15           About GenesLikeMe

3 Novoseek inferred disease relationships for BCL2L15 gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
tumors 10.4 3 9422523 (1), 17392282 (1), 17921043 (1)
necrosis 8.96 2 17520191 (1), 17029566 (1)
ischemia 0 1 19696224 (1)


Export disorders for BCL2L15 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for BCL2L15 gene, integrated from 10 sources (see all 81):
(articles sorted by number of sources associating them with BCL2L15)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Expression of pro-apoptotic Bfk isoforms reduces during malignant transformation in the human gastrointestinal tract. (PubMed id 15961081)1, 2, 3, 9 Dempsey C.E.... Renshaw S.A. (FEBS Lett. 2005)
  2. Bfk, a novel member of the bcl2 gene family, is highly expressed in principal cells of the mouse epididymis and demonstrates a predominant nuclear localization. (PubMed id 17412810)1, 3 Pujianto D.A....Poutanen M. (Endocrinology 2007)
  3. Differential expression of apoptosis-related proteins in various cellular components of ameloblastomas. (PubMed id 16690252)1, 3 Luo H.Y....Li T.J. (Int J Oral Maxillofac Surg 2006)
  4. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Bfk: a novel weakly proapoptotic member of the Bcl-2 protein family with a BH3 and a BH2 region. (PubMed id 12700646)1, 3 Coultas L....Strasser A. (Cell Death Differ. 2003)
  7. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PubMed id 23535729)1 Michailidou K....Easton D.F. (Nat. Genet. 2013)
  8. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  10. Bim and the pro-survival Bcl-2 proteins: opposites attract, ERK repels. (PubMed id 17881896)9 Ewings K.E....Cook S.J. (Cell Cycle 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 440603 HGNC: 33624 AceView: LOC440603 Ensembl:ENSG00000188761 euGenes: HUgn440603
ECgene: BCL2L15 H-InvDB: BCL2L15

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for BCL2L15 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for BCL2L15 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for BCL2L15 gene:
Search GeneIP for patents involving BCL2L15

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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