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Aliases & Descriptions for CCND1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BCL1 2 , 3 , 5 D11S287E 2 PRAD1 2 , 3 , 5 U21B31 1 , 2
Descriptions B-cell CLL/lymphoma 1 2 BCL-1 oncogene 3 G1/S-specific cyclin D1 2 PRAD1 oncogene 3 cyclin D1 2 cyclin D1 (PRAD1: parathyroid adenomatosis 1) 1
Search outside databases for aliases for CCND1 genePrevious GC identifers: GC11P071950 GC11P071141 GC11P069704 GC11P069228
Summaries for CCND1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CCND1 : The protein encoded by this gene belongs to the highly conserved cyclin family, whose members arecharacterized by a dramatic periodicity in protein abundance throughout the cell cycle. Cyclinsfunction as regulators of CDK kinases. Different cyclins exhibit distinct expression anddegradation patterns which contribute to the temporal coordination of each mitotic event. Thiscyclin forms a complex with and functions as a regulatory subunit of CDK4 or CDK6, whose activityis required for cell cycle G1/S transition. This protein has been shown to interact with tumorsuppressor protein Rb and the expression of this gene is regulated positively by Rb. Mutations,amplification and overexpression of this gene, which alters cell cycle progression, are observedfrequently in a variety of tumors and may contribute to tumorigenesis. [provided by RefSeq] UniProtKB/Swiss-Prot: CCND1_HUMAN, P24385 Function : Essential for the control of the cell cycle at the G1/S (start) transition
Gene Wiki entry for CCND1 (Cyclin_D1)
Genomic Location for CCND1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CCND1 gene Entrez Gene cytogenetic band: 11q13 Ensembl cytogenetic band: 11q13.2 HGNC cytogenetic band: 11q13 CCND1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P069165:
(about GC identifiers )
Start:
69,165,054 bp from pter
End:
69,178,423 bp from pter
Size:
13,370 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_078088.3 Proteins for CCND1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CCND1_HUMAN, P24385 (See
protein sequence )Recommended Name: G1/S-specific cyclin-D1 Size : 295 amino acids; 33729 Da
Subunit : Interacts with the CDK4 and CDK6 protein kinases to form a serine/threonine kinaseholoenzyme complex. The cyclin subunit imparts substrate specificity to the complex
PDB structures from and Proteopedia : 2W96 (3D)
 2W99 (3D)
 2W9F (3D)
 2W9Z (3D)
 
Secondary accessions : Q6LEF0
Post-translational modifications:
Phosphorylation at Thr-286 by MAP kinases is required for ubiquitination and degradation followingDNA damage. It probably plays an essential role for recognition by the FBXO31 component of SCF(SKP1-cullin-F-box) protein ligase complex1
Following DNA damage it is ubiquitinated by some SCF (SKP1-cullin-F-box) protein ligase complexcontaining FBXO31. Ubiquitination leads to its degradation and G1 arrest1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_444284.1 ENSEMBL proteins: ENSP00000227507 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CCND1 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for CCND1: Assays for CCND1:
Protein
Domains/ Families for CCND1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P24385 ProtoNet protein and cluster: P24385
1 Blocks protein family : IPB006670 Cyclin UniProtKB/Swiss-Prot: CCND1_HUMAN, P24385 Similarity : Belongs to the cyclin family. Cyclin D subfamily
Gene Function for CCND1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CCND1 ) Millipore RNAi Products for the Analysis of CCND1 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CCND1 )
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_053056 Applied Biosystems Silencer ® siRNAs for CCND1 Sigma-Aldrich siRNA and siRNA Panels for CCND1 Sigma-Aldrich shRNA Panels and shRNA for CCND1 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_053056                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_053056                                  untagged cDNA clone in CMV expression vector: NM_053056  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_053056 UniProtKB/Swiss-Prot: CCND1_HUMAN, P24385 Function : Essential for the control of the cell cycle at the G1/S (start) transition
Genatlas biochemistry entry for CCND1 :cyclin D1,regulator of progression through G1 phase during the cell cycle 1,involved with CDK4 inphosphorylating retinoblastoma protein,STAT5A-regulated transcription,target of activating factor2 (ATF2) in chondrocytes,overexpressed in parathyroid adenoma,breast (stimulatory effect ofestradiol and prolactin),carcinoma,in anaplastic astrocytoma squamous cell carcinoma mantle celllymphoma (same as BCL1,D11S287E)
15/19 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Ccnd1) (see all 19
):4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CCND1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/22 Sigma-Aldrich "Your Favorite Gene" Pathways for CCND1 (Your Favorite Gene powered by Ingenuity) (see all 22
) Gene Network CentralTM Interacting Genes and Proteins Network for CCND1 5/372 Interacting proteins for CCND1 (P24385 1 , 2 ENSP00000227507 3 ) via UniProtKB, MINT, and/or STRING (see all 372
)Interactant Interaction Details GeneCard External ID(s) CDKN1B P46527 1 , ENSP00000228872 3 EBI-375001, EBI-519280 STRING (score=.999 ) BRCA1 P38398 1 , ENSP00000350283 3 EBI-375001, EBI-349905 STRING (score=.994 ) CDK4 P11802 1 , 2 , ENSP00000257904 3 EBI-375001, EBI-295644 MINT-50433 EBI-375001, EBI-295644 MINT-50433 STRING (score=.999 ) CDK6 Q00534 1 , 2 , ENSP00000265734 3 EBI-375001, EBI-295663 MINT-50434 EBI-375001, EBI-295663 MINT-50434 STRING (score=.999 ) MCM10 Q7L590 1 , 2 , ENSP00000354945 3 EBI-375001, EBI-374912 MINT-50435 EBI-375001, EBI-374912 MINT-50435 STRING (score=.998 )
About this table 5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
):
GO ID Qualified GO term Evidence PubMed IDs GO:0000082 G1/S transition of mitotic cell cycle
NAS -- GO:0000320 re-entry into mitotic cell cycle
IEA -- GO:0001934 positive regulation of protein amino acid phosphorylation
IDA 8114739 GO:0010039 response to iron ion
IEA -- GO:0030968 endoplasmic reticulum unfolded protein response
IEA --
About this table
Drugs & Compounds for CCND1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for CCND1
Browse Tocris compounds for CCND1 10/54 Novoseek chemical compound relationships for CCND1 gene (see all 54
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
phosphatidylinositol
57.02
35
9891068 (4), 16123159 (2), 10927622 (1), 12768030 (1) (see all 27 )
pd 98,059
53.44
17
11341512 (1), 17478933 (1), 10683762 (1), 10385595 (1) (see all 16 )
glycogen
51.19
47
12522140 (2), 17519353 (2), 19064714 (2), 11522658 (1) (see all 37 )
bromodeoxyuridine
51.07
16
8988060 (2), 11260083 (1), 10913198 (1), 19032445 (1) (see all 13 )
su9516
50.77
2
12234612 (2)
progesterone
50.54
93
16123159 (3), 15226262 (2), 16844559 (2), 14559845 (2) (see all 74 )
sb-216763
49.42
5
18474214 (1), 15753396 (1), 16024653 (1), 16984735 (1) (see all 5 )
tyrosine
47.98
29
8479754 (2), 10688905 (2), 15569985 (1), 16323429 (1) (see all 25 )
thymidine
44.72
17
18790789 (2), 11322789 (1), 11564890 (1), 15665290 (1) (see all 16 )
inostamycin
40.05
6
9600126 (4), 15672866 (1)
About this table
Transcripts for CCND1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (CCND1 ) Millipore RNAi Products for the Analysis of CCND1 Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (CCND1 )
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_053056 Sigma-Aldrich siRNA and siRNA Panels for CCND1 Sigma-Aldrich shRNA Panels and shRNA for CCND1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_053056
REFSEQ mRNAs for CCND1 gene: NM_053056.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_053056
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_053056                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_053056                                  untagged cDNA clone in CMV expression vector: NM_053056  
Additional cDNA sequence: AB075505.1 AK299044.1 AK313136.1 BC000076.2 BC001501.2 BC014078.2 BC023620.2 BC025302.1 BT019844.1 BT019845.1 CR536538.1 CR542099.1 CR602163.1 CR605397.1 CR624763.1 M64349.1 M73554.1 M74092.1 S71637.1 X59798.1
24/25 DOTS entries (see all 25
): DT.455928 DT.95276487 DT.97805708 DT.95276453 DT.100856781 DT.100667121 DT.120734257 DT.100058492 DT.120734332 DT.120734266 DT.120734335 DT.97846762 DT.40213212 DT.75132881 DT.86841142 DT.100042942 DT.120734264 DT.120734273 DT.120734358 DT.86839165 DT.95276478 DT.95276452 DT.95276461 DT.97824661
24/690 AceView cDNA sequences (see all 690
):BE645864 BQ000354 BE873437 CR536538 BE733859 NM_053056 BM744723 CF127185 R81200 BF765167 BQ688166 BM471396 BQ025942 BC023620 BU845062 CR605397 BC001501 BM562600 CF129264 CR542099 AU141798 BQ010133 BU509374 AU107928
highest scoring ESTs for CCND1 :M64349 M73554 X59798 AA025369 AA029402 AA063257 AA064623 AA064665 AA064705 AA064713
Unigene Cluster for CCND1: Cyclin D1 Hs.523852 [show with all ESTs ] Unigene Representative Sequence: NM_053056 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for CCND1 ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 SP1 :           -   -     -         SP2 :                         SP3 :                     -     SP4 :       -   -   -   -             SP5 :                 -        
About this scheme ECgene alternative splicing isoforms for CCND1 1 Ensembl transcript including schematic representation : ENST00000227507
Expression for CCND1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CCND1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CCND1 1 / 2 / 3
7 probe-sets matching CCND1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAAGTCTAGASOURCE GeneReport for Unigene cluster: Hs.523852 Expression variation in blood from EXPOLDB for CCND1
Orthologs for CCND1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CCND1 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for CCND1 ENSEMBL Gene Tree for CCND1 Paralogs for CCND1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CCND1 gene CCND3 2 CCND2 2
SNPs/Variants for CCND1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CCND1 (up to first 250kb)
Disorders & Mutations for CCND1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 168461 disorders : 114500 193300 UniProtKB/Swiss-Prot: CCND1_HUMAN, P24385
A chromosomal aberration involving CCND1 may be a cause of B-lymphocytic malignancy,particularly mantle-cell lymphoma (MCL). Translocation t(11;14)(q13;q32) with immunoglobulin generegions. Activation of CCND1 may be oncogenic by directly altering progression through the cellcycle A chromosomal aberration involving CCND1 may be a cause of parathyroid adenomas[MIM:168461]. Translocation t(11;11)(q13;p15) with the parathyroid hormone (PTH) enhancer A chromosomal aberration involving CCND1 may be a cause of multiple myeloma [MIM:254500].Translocation t(11;14)(q13;q32) with the IgH locus
10/96 Novoseek disease relationships for CCND1 gene (see all 96
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
retinoblastoma
90.27
362
11286838 (5), 9497916 (5), 15509364 (4), 10201002 (3) (see all 99 )
tumors
82.67
1468
10205781 (7), 17631760 (6), 10329035 (6), 15545188 (5) (see all 99 )
breast cancer
77.58
599
17653856 (6), 17626745 (5), 17278098 (5), 12376514 (5) (see all 99 )
cancer
76.83
429
18498074 (6), 12899785 (5), 16732330 (4), 16863592 (4) (see all 99 )
lymphoma
76.53
373
7540362 (5), 12591969 (5), 11159766 (4), 11291051 (3) (see all 99 )
carcinoma squamous cell
76.52
261
10766394 (6), 17067457 (5), 9816282 (4), 11870667 (3) (see all 99 )
lymphoma mantle-cell
76.04
17
9846986 (2), 8204893 (2), 7772515 (1), 9010577 (1) (see all 12 )
lymphoma small lymphocytic
72.54
12
9556424 (2), 11697516 (1), 9652725 (1), 10319380 (1) (see all 9 )
carcinoma
70.06
303
17374259 (5), 15354413 (4), 18047954 (4), 17631760 (4) (see all 99 )
lymphoma b-cell
69.53
47
18343791 (3), 7540362 (2), 14654791 (2), 7918073 (2) (see all 36 )
About this table Human Gene Mutation Database : CCND1 Genetic Association Database: CCND1 Human Genome Epidemiology Navigator: CCND1 (124 documents) Tumor Gene Database : CCND1 Breast Cancer Gene Database : CCND1
Medical News for CCND1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CCND1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/2962 PubMed articles for CCND1 gene (see all 2962
): A novel cyclin encoded by a bcl1-linked candidate oncogene. (PubMed id 1826542) 1, 2, 3, 4 Motokura T.... Arnold A. (1991) Isolation of three novel human cyclins by rescue of G1 cyclin (Cln) function in yeast. (PubMed id 1833066) 2, 3, 4 Lew D.J....Reed S.I. (1991) Cyclin D1 (CCND1) genotype is associated with tumour grade in sporadic pituitary adenomas. (PubMed id 11698342) 1, 3, 6 Simpson D.J....Farrell W.E. (2001) Cyclin D1 polymorphism and expression in patients with squamous cell carcinoma of the head and neck. (PubMed id 11696452) 1, 3, 6 Holley S.L....Hoban P.R. (2001) Contribution of cyclin d1 (CCND1) and E-cadherin (CDH1) polymorphisms to familial and sporadic colorectal cancer. (PubMed id 11896626) 1, 3, 6 Porter T.R....Maher E.R. (2002) CDK6 (PLSTIRE) and CDK4 (PSK-J3) are a distinct subset of the cyclin- dependent kinases that associate with cyclin D1. (PubMed id 8302605) 1, 3, 4 Bates S....Peters G. (1994) Cyclin D1 polymorphism (G870A) and risk for esophageal adenocarcinoma. (PubMed id 15971196) 1, 3, 6 Casson A.G....Guernsey D.L. (2005) Association of cyclin D1 genotype with breast cancer risk and survival. (PubMed id 15668481) 1, 3, 6 Shu X.O....Zheng W. (2005) Polymorphism within the cyclin D1 gene is associated with an increased risk of carcinoma in situ in patients with superficial bladder cancer. (PubMed id 15245939) 1, 3, 6 Ito M....Ogawa O. (2004) Association of cyclin D1 (G870A) polymorphism with susceptibility to esophageal and gastric cardiac carcinoma in a northern Chinese population. (PubMed id 12673692) 1, 3, 6 Zhang J....Wang S. (2003)
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-- Services for CCND1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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