Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BCDIN3D-AS1 Gene

Subcategory (RNA class) for BCDIN3D-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BCDIN3D-AS1 Gene

  • BCDIN3D Antisense RNA 1 2 3 5
  • BCDIN3D Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BCDIN3D-AS1 Gene

Previous GeneCards Identifiers for BCDIN3D-AS1 Gene

  • GC12P050225

Summaries for BCDIN3D-AS1 Gene

GeneCards Summary for BCDIN3D-AS1 Gene

BCDIN3D-AS1 (BCDIN3D Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for BCDIN3D-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCDIN3D-AS1 Gene

Genomics for BCDIN3D-AS1 Gene

Regulatory Elements for BCDIN3D-AS1 Gene

Enhancers for BCDIN3D-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H048865 1.1 ENCODE 24.5 -962.3 -962312 2 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 DDX23 KMT2D KANSL2 LOC390314 CCNT1 LMBR1L SENP1 BCDIN3D PRPF40B ENSG00000257964
GH12H049748 1.5 Ensembl ENCODE dbSUPER 15.2 -78.4 -78352 3 HDGF PKNOX1 ATF1 FEZF1 ZNF2 ELK1 FOS ATF7 RUNX3 YY2 TMBIM6 BCDIN3D-AS1 SMARCD1 LMBR1L FAIM2 NCKAP5L FMNL3 BCDIN3D DDX23 TUBA1C
GH12H048903 0.9 ENCODE 24.5 -924.7 -924681 1 HDAC1 ZFP64 ARID4B SIN3A BMI1 RAD21 RARA SCRT2 ZNF143 RUNX3 PRPF40B LMBR1L SENP1 DDX23 BCDIN3D BCDIN3D-AS1 KMT2D LOC390314 CCDC184 ENSG00000257964
GH12H049823 1.7 FANTOM5 ENCODE dbSUPER 11.5 -2.0 -2024 6 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 SP3 SMARCD1 LMBR1L FAIM2 ASIC1 DDX23 BCDIN3D-AS1 CERS5 KMT2D TUBA1A ENSG00000272368
GH12H049055 1.7 FANTOM5 ENCODE dbSUPER 10.8 -770.0 -770040 6 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC ZFP41 MEF2D DDX23 LOC390314 LMBR1L CCNT1 KANSL2 KMT2D SENP1 LOC100422296 PRPF40B OR5BK1P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BCDIN3D-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for BCDIN3D-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000051679 -342 1601 HDGF ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 SP3 SP5

Genomic Location for BCDIN3D-AS1 Gene

Chromosome:
12
Start:
49,828,542 bp from pter
End:
49,841,154 bp from pter
Size:
12,613 bases
Orientation:
Plus strand

Genomic View for BCDIN3D-AS1 Gene

Genes around BCDIN3D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCDIN3D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCDIN3D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCDIN3D-AS1 Gene

Proteins for BCDIN3D-AS1 Gene

Post-translational modifications for BCDIN3D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCDIN3D-AS1 Gene

Domains & Families for BCDIN3D-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCDIN3D-AS1 Gene

Function for BCDIN3D-AS1 Gene

Phenotypes From GWAS Catalog for BCDIN3D-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCDIN3D-AS1 Gene

Localization for BCDIN3D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for BCDIN3D-AS1 Gene

Pathways & Interactions for BCDIN3D-AS1 Gene

SuperPathways for BCDIN3D-AS1 Gene

No Data Available

Interacting Proteins for BCDIN3D-AS1 Gene

Gene Ontology (GO) - Biological Process for BCDIN3D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCDIN3D-AS1 Gene

Drugs & Compounds for BCDIN3D-AS1 Gene

No Compound Related Data Available

Transcripts for BCDIN3D-AS1 Gene

mRNA/cDNA for BCDIN3D-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCDIN3D-AS1 Gene

BCDIN3D antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCDIN3D-AS1 Gene

No ASD Table

Relevant External Links for BCDIN3D-AS1 Gene

GeneLoc Exon Structure for
BCDIN3D-AS1
ECgene alternative splicing isoforms for
BCDIN3D-AS1

Expression for BCDIN3D-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BCDIN3D-AS1 Gene

SOURCE GeneReport for Unigene cluster for BCDIN3D-AS1 Gene:

Hs.656019
genes like me logo Genes that share expression patterns with BCDIN3D-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCDIN3D-AS1 Gene

Orthologs for BCDIN3D-AS1 Gene

Evolution for BCDIN3D-AS1 Gene

ENSEMBL:
Gene Tree for BCDIN3D-AS1 (if available)
TreeFam:
Gene Tree for BCDIN3D-AS1 (if available)

No data available for Orthologs for BCDIN3D-AS1 Gene

Paralogs for BCDIN3D-AS1 Gene

No data available for Paralogs for BCDIN3D-AS1 Gene

Variants for BCDIN3D-AS1 Gene

Sequence variations from dbSNP and Humsavar for BCDIN3D-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000020027 -- 49,837,181(+) ACTAA(A/G)GGATA intron-variant, utr-variant-3-prime
rs1000858403 -- 49,830,124(+) ATAAA(A/G)TGCAC intron-variant, upstream-variant-2KB
rs1001322209 -- 49,837,293(+) TTTTT(-/G)TTTTT intron-variant, utr-variant-3-prime
rs1001417899 -- 49,834,912(+) TTTTA(A/T)GGGCA intron-variant
rs1001584820 -- 49,831,186(+) ACTTC(A/G)GCCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BCDIN3D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv522972 CNV gain 19592680

Relevant External Links for BCDIN3D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCDIN3D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BCDIN3D-AS1 Gene

Disorders for BCDIN3D-AS1 Gene

Relevant External Links for BCDIN3D-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BCDIN3D-AS1

No disorders were found for BCDIN3D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCDIN3D-AS1 Gene

Publications for BCDIN3D-AS1 Gene

  1. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt SI … Ingelsson E (Nature genetics 2013) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for BCDIN3D-AS1 Gene

Sources for BCDIN3D-AS1 Gene

Content
Loading form....