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Aliases for BCDIN3D-AS1 Gene

Subcategory (RNA class) for BCDIN3D-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for BCDIN3D-AS1 Gene

  • BCDIN3D Antisense RNA 1 2 3
  • BCDIN3D Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BCDIN3D-AS1 Gene

ORGUL Members for BCDIN3D-AS1 Gene

Previous GeneCards Identifiers for BCDIN3D-AS1 Gene

  • GC12P050225

Summaries for BCDIN3D-AS1 Gene

GeneCards Summary for BCDIN3D-AS1 Gene

BCDIN3D-AS1 (BCDIN3D Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with BCDIN3D-AS1 include intrahepatic cholangiocarcinoma.

fRNAdb sequence ontologies for BCDIN3D-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for BCDIN3D-AS1 Gene

Genomics for BCDIN3D-AS1 Gene

Genomic Location for BCDIN3D-AS1 Gene

Start:
49,828,542 bp from pter
End:
49,841,154 bp from pter
Size:
12,613 bases
Orientation:
Plus strand

Genomic View for BCDIN3D-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BCDIN3D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCDIN3D-AS1 Gene

No data available for Regulatory Elements for BCDIN3D-AS1 Gene

Proteins for BCDIN3D-AS1 Gene

Post-translational modifications for BCDIN3D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCDIN3D-AS1 Gene

Domains for BCDIN3D-AS1 Gene

Gene Families for BCDIN3D-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with BCDIN3D-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCDIN3D-AS1 Gene

Function for BCDIN3D-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for BCDIN3D-AS1 Gene

Localization for BCDIN3D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BCDIN3D-AS1 Gene

Pathways for BCDIN3D-AS1 Gene

SuperPathways for BCDIN3D-AS1 Gene

No Data Available

Interacting Proteins for BCDIN3D-AS1 Gene

Gene Ontology (GO) - Biological Process for BCDIN3D-AS1 Gene

None

No data available for Pathways by source for BCDIN3D-AS1 Gene

Transcripts for BCDIN3D-AS1 Gene

mRNA/cDNA for BCDIN3D-AS1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCDIN3D-AS1 Gene

BCDIN3D antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate BCDIN3D-AS1
    • Block miRNA regulation of BCDIN3D-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for BCDIN3D-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for BCDIN3D-AS1 Gene

    No ASD Table

    Relevant External Links for BCDIN3D-AS1 Gene

    GeneLoc Exon Structure for
    BCDIN3D-AS1
    ECgene alternative splicing isoforms for
    BCDIN3D-AS1

    Expression for BCDIN3D-AS1 Gene

    mRNA expression in normal human tissues for BCDIN3D-AS1 Gene

    SOURCE GeneReport for Unigene cluster for BCDIN3D-AS1 Gene Hs.656019

    genes like me logo Genes that share expressions with BCDIN3D-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for BCDIN3D-AS1 Gene

    Orthologs for BCDIN3D-AS1 Gene

    Evolution for BCDIN3D-AS1 Gene

    ENSEMBL:
    Gene Tree for BCDIN3D-AS1 (if available)
    TreeFam:
    Gene Tree for BCDIN3D-AS1 (if available)

    No data available for Orthologs for BCDIN3D-AS1 Gene

    Paralogs for BCDIN3D-AS1 Gene

    No data available for Paralogs for BCDIN3D-AS1 Gene

    Variants for BCDIN3D-AS1 Gene

    Sequence variations from dbSNP and Humsavar for BCDIN3D-AS1 Gene

    SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
    rs4290311 -- 49,835,366(+) AAGCG(A/G)TTCTC intron-variant
    rs4391887 -- 49,831,467(+) TTGAT(A/G)AGGCT intron-variant
    rs4898533 -- 49,832,220(+) CATGC(C/G)TGGCC intron-variant
    rs7313739 -- 49,831,633(+) CTCTG(G/T)TAGCT intron-variant
    rs7953539 -- 49,834,205(+) gaatc(A/G)cttga intron-variant

    Relevant External Links for BCDIN3D-AS1 Gene

    HapMap Linkage Disequilibrium report
    BCDIN3D-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for BCDIN3D-AS1 Gene

    Disorders for BCDIN3D-AS1 Gene

    MalaCards: The human disease database

    MalaCards: The human disease database. (1) Diseases for BCDIN3D-AS1 Gene including...

    Search for BCDIN3D-AS1 Gene in MalaCards »
    genes like me logo Genes that share disorders with BCDIN3D-AS1: view

    No data available for UniProtKB/Swiss-Prot for BCDIN3D-AS1 Gene

    Publications for BCDIN3D-AS1 Gene

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3
    4. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3

    Products for BCDIN3D-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate BCDIN3D-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for BCDIN3D-AS1
      • Block miRNA regulation of BCDIN3D-AS1 using miScript Target Protectors

      Sources for BCDIN3D-AS1 Gene

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