Free for academic non-profit institutions. Other users need a Commercial license

Aliases for BCDIN3D-AS1 Gene

Subcategory (RNA class) for BCDIN3D-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for BCDIN3D-AS1 Gene

  • BCDIN3D Antisense RNA 1 2 3 5
  • BCDIN3D Antisense RNA 1 (Non-Protein Coding) 2

External Ids for BCDIN3D-AS1 Gene

Previous GeneCards Identifiers for BCDIN3D-AS1 Gene

  • GC12P050225

Summaries for BCDIN3D-AS1 Gene

GeneCards Summary for BCDIN3D-AS1 Gene

BCDIN3D-AS1 (BCDIN3D Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCDIN3D-AS1 Gene

Genomics for BCDIN3D-AS1 Gene

Regulatory Elements for BCDIN3D-AS1 Gene

Enhancers for BCDIN3D-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F049627 1.3 FANTOM5 Ensembl ENCODE 11.3 -202.3 -202277 0.3 CTCF PKNOX1 ZNF518A ZNF781 ZNF316 ZFHX2 SMC3 NFE2 EMSY EGR2 BCDIN3D-AS1 FAM186B RNU6-834P FMNL3 TMBIM6 MCRS1 C1QL4 ENSG00000272368 SPATS2 HIGD1AP9
GH12F050015 1 Ensembl ENCODE 11.3 +189.3 189283 3.7 HDAC1 PKNOX1 KLF1 JUN RAD21 ZNF101 ZNF121 ZNF316 FOXK2 ZBTB48 ASIC1 BCDIN3D-AS1 AQP6 AQP5 RACGAP1 AQP2 ENSG00000272368 COX14 LIMA1 LARP4
GH12F049129 0.6 ENCODE 11.3 -697.2 -697176 4.6 CREB3L1 MLX YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 DDX23 LOC390314 PRPF40B CCNT1 BCDIN3D KANSL2 ENSG00000257964 LOC100422296 LOC105369760 CCDC184
GH12F048923 0.2 ENCODE 11.3 -903.6 -903617 2.8 WRNIP1 ZFP64 SIN3A RAD21 ZNF143 CREM ZNF202 ZNF680 SP3 ZBTB11 DDX23 CCNT1 SENP1 LOC390314 BCDIN3D KANSL2 LOC101927267 ENSG00000257964 FAM186B PRPF40B
GH12F048924 0.5 ENCODE 11.3 -905.2 -905190 0.2 ZNF202 ZNF680 GFI1B ZNF140 ZNF266 ZNF518A ZNF781 ZNF101 ZNF264 ZNF664 DDX23 CCNT1 SENP1 LOC390314 BCDIN3D KANSL2 LOC101927267 ENSG00000257964 FAM186B PRPF40B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BCDIN3D-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for BCDIN3D-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000088330 -442 2201 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for BCDIN3D-AS1 Gene

Chromosome:
12
Start:
49,828,542 bp from pter
End:
49,841,154 bp from pter
Size:
12,613 bases
Orientation:
Plus strand

Genomic View for BCDIN3D-AS1 Gene

Genes around BCDIN3D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCDIN3D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCDIN3D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCDIN3D-AS1 Gene

Proteins for BCDIN3D-AS1 Gene

Post-translational modifications for BCDIN3D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for BCDIN3D-AS1 Gene

Domains & Families for BCDIN3D-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for BCDIN3D-AS1 Gene

Function for BCDIN3D-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for BCDIN3D-AS1 Gene

Localization for BCDIN3D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for BCDIN3D-AS1 Gene

Pathways & Interactions for BCDIN3D-AS1 Gene

SuperPathways for BCDIN3D-AS1 Gene

No Data Available

Interacting Proteins for BCDIN3D-AS1 Gene

Gene Ontology (GO) - Biological Process for BCDIN3D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for BCDIN3D-AS1 Gene

Transcripts for BCDIN3D-AS1 Gene

mRNA/cDNA for BCDIN3D-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BCDIN3D-AS1 Gene

BCDIN3D antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for BCDIN3D-AS1 Gene

No ASD Table

Relevant External Links for BCDIN3D-AS1 Gene

GeneLoc Exon Structure for
BCDIN3D-AS1
ECgene alternative splicing isoforms for
BCDIN3D-AS1

Expression for BCDIN3D-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BCDIN3D-AS1 Gene

SOURCE GeneReport for Unigene cluster for BCDIN3D-AS1 Gene:

Hs.656019
genes like me logo Genes that share expression patterns with BCDIN3D-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for BCDIN3D-AS1 Gene

Orthologs for BCDIN3D-AS1 Gene

Evolution for BCDIN3D-AS1 Gene

ENSEMBL:
Gene Tree for BCDIN3D-AS1 (if available)
TreeFam:
Gene Tree for BCDIN3D-AS1 (if available)

No data available for Orthologs for BCDIN3D-AS1 Gene

Paralogs for BCDIN3D-AS1 Gene

No data available for Paralogs for BCDIN3D-AS1 Gene

Variants for BCDIN3D-AS1 Gene

Sequence variations from dbSNP and Humsavar for BCDIN3D-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10875973 -- 49,829,294(+) CAGTC(C/T)CCGCC intron-variant, upstream-variant-2KB
rs10875974 -- 49,829,544(+) TCTGC(A/G)TGGGA intron-variant, upstream-variant-2KB
rs10875975 -- 49,831,069(+) gctga(A/G)attac intron-variant
rs10875976 -- 49,832,684(+) GGAGA(A/G)TAGCA intron-variant
rs10875977 -- 49,841,206(+) TGTAC(A/G)TAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BCDIN3D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv522972 CNV gain 19592680

Relevant External Links for BCDIN3D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCDIN3D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for BCDIN3D-AS1 Gene

Disorders for BCDIN3D-AS1 Gene

Relevant External Links for BCDIN3D-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BCDIN3D-AS1

No disorders were found for BCDIN3D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCDIN3D-AS1 Gene

Publications for BCDIN3D-AS1 Gene

  1. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for BCDIN3D-AS1 Gene

Sources for BCDIN3D-AS1 Gene

Content
Loading form....