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Aliases & Descriptions for TRERF1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BCAR2 2, 3 | | FLJ21198 2 | | HSA277276 1, 2 | | OTTHUMP00000016399 2 | | RAPA 1, 2, 3 | | RP1-139D8.5 2 | | TREP132 3 | | TReP-132 1, 2 | | dJ139D8.5 1, 2 | | rapa-1 2 | | rapa-2 2 |
| | | Descriptions |
|---|
| Breast cancer anti-estrogen resistance 2 1, 2, 3 | | Transcriptional-regulating protein 132 3 | | Zinc finger protein rapa 3 | | Zinc finger transcription factor TReP-132 3 | | transcriptional regulating factor 1 2 | | transcriptional regulating protein 132 2 |
|
| | Search outside databases for aliases for TRERF1 genePrevious GC identifer: GC06M042242 |
Summaries for TRERF1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TRERF1: This gene encodes a zinc-finger transcriptional regulating protein which interacts with CBP/p300 to regulate the human gene CYP11A1. [provided by RefSeq] UniProtKB/Swiss-Prot: TREF1_HUMAN, Q96PN7Function: Activates transcription of CYP11A1. Interaction with CREBBP and EP300 results in a synergistic transcriptional activation of CYP11A1Gene Wiki entry for TRERF1 |
Genomic Location for TRERF1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TRERF1 gene 
Entrez Gene cytogenetic band: 6p21.1-p12.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1-p12.1TRERF1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M042303:
(about GC identifiers)
Start:
|
42,300,647 bp from pter |
End:
|
42,527,767 bp from pter |
Size:
|
227,121 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14
| Proteins for TRERF1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TREF1_HUMAN, Q96PN7 (See
protein sequence)Recommended Name: Transcriptional-regulating factor 1 Size: 1200 amino acids; 132256 Da
Subunit: Interacts with CREBBP and EP300
Subcellular location: Nucleus
Secondary accessions: Q05GC6 Q7Z6T2 Q7Z6T3 Q9NQ72 Q9NQ73 Q9NUN9Alternative splicing: 5 isoforms: Q96PN7-1 Q96PN7-2 Q96PN7-3 Q96PN7-4 Q96PN7-5 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_277037.1
ENSEMBL proteins: ENSP00000346285 ENSP00000362008 ENSP00000362005 ENSP00000362013 ENSP00000339438
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TRERF1: Assays for TRERF1: | Protein
Domains/ Families for TRERF1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q96PN7
ProtoNet protein and cluster: Q96PN7 UniProtKB/Swiss-Prot: TREF1_HUMAN, Q96PN7Similarity: Contains 3 C2H2-type zinc fingersSimilarity: Contains 1 ELM2 domainSimilarity: Contains 1 SANT domain | Gene Function for TRERF1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_033501
Applied Biosystems Silencer® siRNAs for TRERF1
Sigma-Aldrich siRNA for TRERF1  Sigma-Aldrich shRNA for TRERF1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_033502                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_033502                                  untagged cDNA clones in CMV expression vector (see all 2): NM_018415 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_033502
UniProtKB/Swiss-Prot: TREF1_HUMAN, Q96PN7Function: Activates transcription of CYP11A1. Interaction with CREBBP and EP300 results in a synergistic transcriptional activation of CYP11A15/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for TRERF1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for TRERF1 
5/10 Interacting proteins for TRERF1 (ENSP000003620133) via UniProtKB, MINT, and/or STRING (see all 10
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for TRERF1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TRERF1 1 Novoseek chemical compound relationship for TRERF1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| steroid |
49.06 |
1 |
12556907 (1) |
About this table
|
Transcripts for TRERF1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_033501
Sigma-Aldrich siRNA for TRERF1  Sigma-Aldrich shRNA for TRERF1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_033502 REFSEQ mRNAs for TRERF1 gene: NM_033502.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_033502               OriGene GFP tagged cDNA clone in CMV expression vector: NM_033502                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_033502                                  untagged cDNA clones in CMV expression vector (see all 2): NM_018415  Additional cDNA sequence: AF111801.1 AF297872.1 AJ277275.1 AJ277276.1 AK002096.1 AK127493.1 AK308473.1 AM404182.1 AM404183.1 AM404259.1 10 DOTS entries: DT.102823818 DT.100757479 DT.306866 DT.95274464 DT.100707313 DT.102823817 DT.121343431 DT.427964 DT.97837632 DT.99970910 24/96 AceView cDNA sequences (see all 96
):AW518695 BM701209 AW117866 BX489946 BX952047 BE645262 AA878783 AK127493 BM784836 NM_033502 BX508943 AF297872 BF724270 BU859373 BQ775152 AI299636 NM_033501 BM770293 AA811416 AA926899 AW006022 CD705237 BX504990 BX489945
highest scoring ESTs for TRERF1:AW006022 AF297872 AA252764 AA252826 AA493429 AA804960 AA878783 AI056311 AI299636 AI375580 Unigene Cluster for TRERF1: Transcriptional regulating factor 1 Hs.485392 [show with all ESTs]Unigene Representative Sequence: AM404182
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for TRERF1 (see all 7
)
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | · | 12c | · | 12d | ^ | 13a | · | 13b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TRERF1
5 Ensembl transcripts including schematic representations: ENST00000354325
ENST00000372917
ENST00000372914
ENST00000372922
ENST00000340840
|
Expression for TRERF1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TRERF1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TRERF1
1 / 2 / 3 8 probe-sets matching TRERF1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.485392 UniProtKB/Swiss-Prot: TREF1_HUMAN, Q96PN7Tissue specificity: Highest expression was seen in thymus, testis and adrenal cortex, expressed also in the adrenal medulla, thyroid, and stomach. Highly expressed in steroidogenic JEG-3 and MCF-7 cells, low expression was seen in non-steroidogenic HepG2 and HK293 cells |
Orthologs for TRERF1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TRERF1 gene from 5 species
About this table Species with no ortholog for TRERF1
ENSEMBL Gene Tree for TRERF1 | Paralogs for TRERF1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TRERF1 gene
- ZNF5412 C14orf432
|
SNPs/Variants for TRERF1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TRERF1 (up to first 250kb)
|
Disorders & Mutations for TRERF1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 610322
Human Gene Mutation Database: TRERF1
|
Medical News for TRERF1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TRERF1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/17 PubMed articles for TRERF1 gene (see all 17
):- A novel zinc finger protein TReP-132 interacts with CBP/p300 to regulate human CYP11A1 gene expression. (PubMed id 11349124)1, 2, 3, 4 Gizard F.... Hum D.W. (2001)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- TReP-132 controls cell proliferation by regulating the expression of the cyclin-dependent kinase inhibitors p21WAF1/Cip1 and p27Kip1. (PubMed id 15899840)1, 3 Gizard F....Hum D.W. (2005)
- The transcriptional regulating protein of 132 kDa (TReP-132) enhances P450scc gene transcription through interaction with steroidogenic factor-1 in human adrenal cells. (PubMed id 12101186)1, 3 Gizard F....Hum D.W. (2002)
- The transcriptional regulating protein of 132 kDa (TReP-132) differentially influences steroidogenic pathways in human adrenal NCI-H295 cells. (PubMed id 15072559)1, 3 Gizard F....Hum D.W. (2004)
- Function of the transcriptional regulating protein of 132 kDa (TReP-132) on human P450scc gene expression. (PubMed id 12530663)1, 3 Gizard F....Hum D.W. (2002)
- Functional identification of genes causing estrogen independence of human breast cancer cells. (PubMed id 18351453)4 van Agthoven T....Dorssers L.C.J. (2009)
- TReP-132 is a novel progesterone receptor coactivator required for the inhibition of breast cancer cell growth and enhancement of differentiation by progesterone. (PubMed id 17015480)3 Gizard F....Staels B. (2006)
|
Search for TRERF1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TRERF1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TRERF1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TRERF1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TRERF1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for TRERF1:

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Incremental update: 13 Oct 2009
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