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Aliases & Descriptions for BCAN
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BEHAB 1 , 2 , 3 CSPG7 1 , 2 , 3 MGC13038 1 , 2 OTTHUMP00000032164 2 OTTHUMP00000032165 2 brevican 2
Descriptions Brain-enriched hyaluronan-binding protein 3 Protein BEHAB 3 brevican proteoglycan 2 chondroitin sulfate proteoglycan 7 2 chondroitin sulfate proteoglycan BEHAB 2 chondroitin sulfate proteoglycan BEHAB/brevican 2
Search outside databases for aliases for BCAN genePrevious GC identifers: GC01P154481 GC01P152377 GC01P153390 GC01P153828 GC01P153424
Summaries for BCAN (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: PGCB_HUMAN, Q96GW7 Function : May play a role in the terminally differentiating and the adult nervous system duringpostnatal development. Could stabilize interactions between hyaluronan (HA) and brainproteoglycans
Gene Wiki entry for BCAN (Brevican)
Genomic Location for BCAN
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the BCAN gene Entrez Gene cytogenetic band: 1q31 Ensembl cytogenetic band: 1q23.1 HGNC cytogenetic band: 1q31 BCAN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P154878:
(about GC identifiers )
Start:
154,878,357 bp from pter
End:
154,895,944 bp from pter
Size:
17,588 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for BCAN
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PGCB_HUMAN, Q96GW7 (See
protein sequence )Recommended Name: Brevican core protein precursor Size : 911 amino acids; 99118 Da
Subunit : Interacts with TNR (By similarity)
Subcellular location : Isoform 1: Secreted, extracellular space, extracellular matrix
Subcellular location : Isoform 2: Membrane; Lipid-anchor, GPI-anchor
Developmental stage : Isoform 1 is highly expressed from birth through 8 years of age and isdown-regulated by 20 years of age to low levels that are maintained in the normal adult cortex.Isoform 2 is expressed at uniformly low levels throughout development
Secondary accessions : Q8TBB9 Q9HBK1 Q9HBK4Alternative splicing : 2 isoforms : Q96GW7-1 Q96GW7-2
Post-translational modifications:
Contains mostly chondroitin sulfate (By similarity)1
Isoform 2 is predicted to have its GPI-anchor on 'Asn-649'1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_068767.3 NP_940819.1 ENSEMBL proteins: ENSP00000331210 ENSP00000354925 ENSP00000255029 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8
):
About this table Antibodies for BCAN: Assays for BCAN:
Protein
Domains/ Families for BCAN(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96GW7 ProtoNet protein and cluster: Q96GW7
4 Blocks protein families : IPB000436 Sushi domain/SCR domain/CCP module IPB000538 Link domain IPB002353 Type II antifreeze protein signature IPB013106 Immunoglobulin V-set UniProtKB/Swiss-Prot: PGCB_HUMAN, Q96GW7 Similarity : Belongs to the aggrecan/versican proteoglycan familySimilarity : Contains 1 C-type lectin domainSimilarity : Contains 1 EGF-like domainSimilarity : Contains 1 Ig-like V-type (immunoglobulin-like) domainSimilarity : Contains 2 Link domainsSimilarity : Contains 1 Sushi (CCP/SCR) domain
Gene Function for BCAN
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_198427 Applied Biosystems Silencer ® siRNAs for BCAN Sigma-Aldrich siRNA and siRNA Panels for BCAN Sigma-Aldrich shRNA Panels and shRNA for BCAN Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_021948                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_021948                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC010117  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_021948 UniProtKB/Swiss-Prot: PGCB_HUMAN, Q96GW7 Function : May play a role in the terminally differentiating and the adult nervous system duringpostnatal development. Could stabilize interactions between hyaluronan (HA) and brainproteoglycans
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Bcan) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for BCAN
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for BCAN 5/11 Interacting proteins for BCAN (Q96GW7 2 ENSP00000331210 3 ) via UniProtKB, MINT, and/or STRING (see all 11
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007155 cell adhesion
IEA --
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Drugs & Compounds for BCAN (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for BCAN
Transcripts for BCAN(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_198427 Sigma-Aldrich siRNA and siRNA Panels for BCAN Sigma-Aldrich shRNA Panels and shRNA for BCAN Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_021948 NM_198427
REFSEQ mRNAs for BCAN gene (2 alternative transcripts): NM_021948.3 NM_198427.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_021948 NM_198427
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_021948                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_021948                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC010117  
Additional cDNA sequence: BC010117.2 BC067354.1
24/25 DOTS entries (see all 25
): DT.110521 DT.101984636 DT.75102201 DT.86846012 DT.121406541 DT.101984634 DT.100806730 DT.436076 DT.95254987 DT.91944937 DT.121406534 DT.92457078 DT.92457091 DT.91705336 DT.92457086 DT.92457087 DT.95088684 DT.100030847 DT.100806732 DT.75186146 DT.92457081 DT.95088681 DT.95142948 DT.95209711
24/394 AceView cDNA sequences (see all 394
):CD673033 BC029348 BF347021 BF527186 BG818851 AW291404 CB153236 BF338679 BG910211 AI880291 BC035457 BF527689 BC023209 CB153420 BG914019 BC027971 BF345818 BC009117 BF530989 BM708927 AL538295 BF526392 BG818856 AF268002
highest scoring ESTs for BCAN :AI979110 AA758271 AF228710 AI205180 AI272375 AI337268 AI343343 AI361061 AI378579 AI880216
Unigene Clusters for BCAN: Brevican Hs.516904 [show with all ESTs ] , Hs.663621 [show with all ESTs ] Unigene Representative Sequences: NM_021948 , BC010117 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for BCAN (see all 12
) ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ SP1 :               -   -   -                                   SP2 :                 -                                     SP3 :                                           -           SP4 :         -         -                                     SP5 :                 -                                    
ExUns: 18a · 18b SP1 :     SP2 :     SP3 :     SP4 :     SP5 :    
About this scheme ECgene alternative splicing isoforms for BCAN 3 Ensembl transcripts including schematic representations : ENST00000329117
ENST00000361588
ENST00000255029
Expression for BCAN
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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BCAN expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for BCAN 1 / 2 / 3
17 probe-sets matching BCAN gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAGATCAGAGSOURCE GeneReport for Unigene clusters: Hs.516904 Hs.663621
Orthologs for BCAN
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for BCAN gene from 5/8 species (see all 8
)
About this table Species with no ortholog for BCAN ENSEMBL Gene Tree for BCAN Paralogs for BCAN (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for BCAN gene ACAN 2 VCAN 2
SNPs/Variants for BCAN (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for BCAN (up to first 250kb)
Disorders & Mutations for BCAN
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600347
Medical News for BCAN (Possibly Related Articles in
Doctor's Guide )
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--
Publications for BCAN (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/19 PubMed articles for BCAN gene (see all 19
): cDNA cloning, chromosomal localization, and expression analysis of human BEHAB/brevican, a brain specific proteoglycan regulated during cortical development and in glioma. (PubMed id 11054543) 2, 3, 4 Gary S.C.... Hockfield S. (2000) Human BRAL1 and BCAN genes that belong to the link-module superfamily are tandemly arranged on chromosome 1q21-23. (PubMed id 11873941) 1, 2, 3 Nomoto H....Ninomiya Y. (2002) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3, 4 Clark H.F....Gray A. (2003) The proteoglycan brevican binds to fibronectin after proteolytic cleavage and promotes glioma cell motility. (PubMed id 18611854) 3 Hu B....Viapiano M.S. (2008) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 3 Barbe L....Andersson-Svahn H. (2008) Novel tumor-specific isoforms of BEHAB/brevican identified in human malignant gliomas. (PubMed id 16061654) 3 Viapiano M.S....Matthews R.T. (2005) Human glioblastomas overexpress ADAMTS-5 that degrades brevican. (PubMed id 16133547) 3 Nakada M....Okada Y. (2005) Secreted brevican mRNA is expressed in the adult rat pituitary. (PubMed id 14741698) 3 Dong Y....Lu Y. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3 Ota T....Sugano S. (2004)
Search for BCAN
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Genome Databases showing BCAN
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing BCAN
(According to HUGE )
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Specialized Databases showing BCAN (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Functional Glycomics Gateway - Glycan Binding http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_212
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-- Services for BCAN (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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