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Aliases for BCAN Gene

Aliases for BCAN Gene

  • Brevican 2 3 5
  • Chondroitin Sulfate Proteoglycan 7 2 3 4
  • Brain-Enriched Hyaluronan-Binding Protein 3 4
  • BEHAB 3 4
  • CSPG7 3 4
  • Chondroitin Sulfate Proteoglycan BEHAB 3
  • Brevican Proteoglycan 2
  • Brevican Core Protein 3

External Ids for BCAN Gene

Previous GeneCards Identifiers for BCAN Gene

  • GC01P154481
  • GC01P152377
  • GC01P153390
  • GC01P153828
  • GC01P153424
  • GC01P154878
  • GC01P156611
  • GC01P127969

Summaries for BCAN Gene

Entrez Gene Summary for BCAN Gene

  • This gene encodes a member of the lectican family of chondroitin sulfate proteoglycans that is specifically expressed in the central nervous system. This protein is developmentally regulated and may function in the formation of the brain extracellular matrix. This protein is highly expressed in gliomas and may promote the growth and cell motility of brain tumor cells. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]

GeneCards Summary for BCAN Gene

BCAN (Brevican) is a Protein Coding gene. Among its related pathways are ECM proteoglycans and Cell adhesion_Cell-matrix glycoconjugates. GO annotations related to this gene include carbohydrate binding and hyaluronic acid binding. An important paralog of this gene is ACAN.

UniProtKB/Swiss-Prot for BCAN Gene

  • May play a role in the terminally differentiating and the adult nervous system during postnatal development. Could stabilize interactions between hyaluronan (HA) and brain proteoglycans.

Gene Wiki entry for BCAN Gene

Additional gene information for BCAN Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BCAN Gene

Genomics for BCAN Gene

Regulatory Elements for BCAN Gene

Enhancers for BCAN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H156486 2.1 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -142.5 -142527 25 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZNF610 GLIS1 RRNAD1 GON4L KIAA0907 ENSG00000271267 MSTO2P MSTO1 LOC246784 ISG20L2 ENSG00000246203 MEF2D
GH01H156689 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +50.6 50610 5 HDGF PKNOX1 ARNT ARID4B SIN3A ZBTB7B SLC30A9 ZNF766 ZNF143 FOS RRNAD1 KIAA0907 GON4L MSTO2P CCT3 LOC105371453 BCAN ISG20L2 HDGF LOC246784
GH01H156569 1.4 FANTOM5 ENCODE 10.7 -69.8 -69847 3 ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZNF143 FOS SP3 MXD4 NFYC NAXE MEF2D BCAN CCT3 TSACC GPATCH4 TTC24 IQGAP3 GC01P156524
GH01H156551 1 Ensembl ENCODE 10.7 -88.6 -88638 3 TBP JUN MAX CEBPG RAD21 RFX5 ZKSCAN1 POLR2A SMC3 RCOR1 NAXE MEF2D HAPLN2 BCAN CCT3 C1orf61 MIR9-1 TSACC SMG5 IQGAP3
GH01H156445 0.9 ENCODE 10.2 -195.4 -195387 0 ELF3 ARID4B KLF17 SIN3A RAD21 RFX5 ELK1 ZNF143 RCOR1 IKZF2 MIR9-1 CCT3 RHBG TSACC NAXE PAQR6 BCAN ENSG00000236947 C1orf61
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around BCAN on UCSC Golden Path with GeneCards custom track

Genomic Location for BCAN Gene

Chromosome:
1
Start:
156,641,390 bp from pter
End:
156,659,532 bp from pter
Size:
18,143 bases
Orientation:
Plus strand

Genomic View for BCAN Gene

Genes around BCAN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BCAN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BCAN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BCAN Gene

Proteins for BCAN Gene

  • Protein details for BCAN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GW7-PGCB_HUMAN
    Recommended name:
    Brevican core protein
    Protein Accession:
    Q96GW7
    Secondary Accessions:
    • D3DVC2
    • Q5SZ10
    • Q5T3I5
    • Q8TBB9
    • Q9HBK1
    • Q9HBK4

    Protein attributes for BCAN Gene

    Size:
    911 amino acids
    Molecular mass:
    99118 Da
    Quaternary structure:
    • Interacts with TNR.

    Alternative splice isoforms for BCAN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BCAN Gene

Post-translational modifications for BCAN Gene

  • Contains mostly chondroitin sulfate (By similarity). O-glycosylated with a core 1 or possibly core 8 glycan.
  • Glycosylation at posLast=130130, Asn337, posLast=540540, posLast=905905, and Ser906
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for BCAN Gene

Domains & Families for BCAN Gene

Suggested Antigen Peptide Sequences for BCAN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96GW7

UniProtKB/Swiss-Prot:

PGCB_HUMAN :
  • Belongs to the aggrecan/versican proteoglycan family.
Family:
  • Belongs to the aggrecan/versican proteoglycan family.
genes like me logo Genes that share domains with BCAN: view

Function for BCAN Gene

Molecular function for BCAN Gene

UniProtKB/Swiss-Prot Function:
May play a role in the terminally differentiating and the adult nervous system during postnatal development. Could stabilize interactions between hyaluronan (HA) and brain proteoglycans.

Phenotypes From GWAS Catalog for BCAN Gene

Gene Ontology (GO) - Molecular Function for BCAN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005201 extracellular matrix structural constituent IBA --
GO:0005540 hyaluronic acid binding IBA --
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with BCAN: view
genes like me logo Genes that share phenotypes with BCAN: view

Animal Models for BCAN Gene

MGI Knock Outs for BCAN:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for BCAN
  • Applied Biological Materials Clones for BCAN
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BCAN Gene

Localization for BCAN Gene

Subcellular locations from UniProtKB/Swiss-Prot for BCAN Gene

Isoform 1: Secreted, extracellular space, extracellular matrix.
Isoform 2: Membrane; Lipid-anchor, GPI-anchor.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for BCAN gene
Compartment Confidence
extracellular 5
lysosome 5
golgi apparatus 4
plasma membrane 3
mitochondrion 2
nucleus 2
cytosol 2
cytoskeleton 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for BCAN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005578 proteinaceous extracellular matrix IBA --
GO:0005796 Golgi lumen TAS --
GO:0016020 membrane IEA --
GO:0031225 anchored component of membrane IEA --
genes like me logo Genes that share ontologies with BCAN: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for BCAN Gene

Pathways & Interactions for BCAN Gene

genes like me logo Genes that share pathways with BCAN: view

Gene Ontology (GO) - Biological Process for BCAN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001501 skeletal system development IBA --
GO:0007155 cell adhesion IEA --
GO:0007417 central nervous system development IBA --
GO:0021766 hippocampus development IEA --
GO:0022617 extracellular matrix disassembly TAS --
genes like me logo Genes that share ontologies with BCAN: view

No data available for SIGNOR curated interactions for BCAN Gene

Drugs & Compounds for BCAN Gene

(1) Drugs for BCAN Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Hyaluronic acid Approved, Vet_approved Pharma 503
genes like me logo Genes that share compounds with BCAN: view

Transcripts for BCAN Gene

Unigene Clusters for BCAN Gene

Brevican:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for BCAN
  • Applied Biological Materials Clones for BCAN
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for BCAN Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^
SP1: - - -
SP2: -
SP3: -
SP4: - -
SP5: -
SP6: -
SP7:
SP8: -
SP9:
SP10: - - - - - - - - -
SP11: - - - -
SP12:

ExUns: 18a · 18b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for BCAN Gene

GeneLoc Exon Structure for
BCAN
ECgene alternative splicing isoforms for
BCAN

Expression for BCAN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for BCAN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for BCAN Gene

This gene is overexpressed in Brain - Amygdala (x7.3), Brain - Caudate (basal ganglia) (x5.2), Brain - Hippocampus (x5.2), Brain - Putamen (basal ganglia) (x5.1), Brain - Nucleus accumbens (basal ganglia) (x5.0), Brain - Anterior cingulate cortex (BA24) (x4.1), and Brain - Substantia nigra (x4.0).

Protein differential expression in normal tissues from HIPED for BCAN Gene

This gene is overexpressed in Frontal cortex (30.7), Brain (19.6), and Cerebrospinal fluid (8.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for BCAN Gene



Protein tissue co-expression partners for BCAN Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of BCAN Gene:

BCAN

SOURCE GeneReport for Unigene cluster for BCAN Gene:

Hs.516904

Evidence on tissue expression from TISSUES for BCAN Gene

  • Nervous system(5)
genes like me logo Genes that share expression patterns with BCAN: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for BCAN Gene

Orthologs for BCAN Gene

This gene was present in the common ancestor of animals.

Orthologs for BCAN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BCAN 33 34
  • 99.51 (n)
cow
(Bos Taurus)
Mammalia BCAN 33 34
  • 89.27 (n)
dog
(Canis familiaris)
Mammalia BCAN 33 34
  • 87.78 (n)
rat
(Rattus norvegicus)
Mammalia Bcan 33
  • 83.49 (n)
mouse
(Mus musculus)
Mammalia Bcan 33 16 34
  • 83.37 (n)
oppossum
(Monodelphis domestica)
Mammalia BCAN 34
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 52 (a)
ManyToMany
chicken
(Gallus gallus)
Aves BCAN 33 34
  • 70.81 (n)
lizard
(Anolis carolinensis)
Reptilia BCAN 34
  • 38 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100486298 33
  • 58.77 (n)
zebrafish
(Danio rerio)
Actinopterygii bcan 33 34
  • 59.01 (n)
worm
(Caenorhabditis elegans)
Secernentea clec-149 34
  • 23 (a)
OneToMany
Species where no ortholog for BCAN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BCAN Gene

ENSEMBL:
Gene Tree for BCAN (if available)
TreeFam:
Gene Tree for BCAN (if available)

Paralogs for BCAN Gene

Paralogs for BCAN Gene

genes like me logo Genes that share paralogs with BCAN: view

Variants for BCAN Gene

Sequence variations from dbSNP and Humsavar for BCAN Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000147163 -- 156,655,957(+) CCCAG(C/T)ATCTT intron-variant
rs1000166226 -- 156,656,727(+) TTCCT(G/T)TCTCT intron-variant
rs1000277130 -- 156,650,834(+) GCTAC(A/T)TGGGA intron-variant
rs1000329119 -- 156,658,322(+) GGCTA(C/G)GGGAC intron-variant
rs1000429503 -- 156,644,536(+) CCCCA(A/T)CAAGA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BCAN Gene

Variant ID Type Subtype PubMed ID
nsv521401 CNV loss 19592680
nsv521552 CNV loss 19592680
nsv523181 CNV loss 19592680

Variation tolerance for BCAN Gene

Residual Variation Intolerance Score: 15.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.82; 86.88% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BCAN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BCAN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BCAN Gene

Disorders for BCAN Gene

Relevant External Links for BCAN

Genetic Association Database (GAD)
BCAN
Human Genome Epidemiology (HuGE) Navigator
BCAN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BCAN

No disorders were found for BCAN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BCAN Gene

Publications for BCAN Gene

  1. Human BRAL1 and BCAN genes that belong to the link-module superfamily are tandemly arranged on chromosome 1q21-23. (PMID: 11873941) Nomoto H … Ninomiya Y (Acta medica Okayama 2002) 2 3 22 60
  2. cDNA cloning, chromosomal localization, and expression analysis of human BEHAB/brevican, a brain specific proteoglycan regulated during cortical development and in glioma. (PMID: 11054543) Gary SC … Hockfield S (Gene 2000) 2 3 4 60
  3. Confirmation of genomewide association signals in Chinese Han population reveals risk loci for ischemic stroke. (PMID: 19910543) Ding H … Wang DW (Stroke 2010) 3 45 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 60

Products for BCAN Gene

  • Addgene plasmids for BCAN

Sources for BCAN Gene

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