BBX Gene
protein-coding GIFtS: 47
GCID: GC03P107241
|
|
bobby sox homolog (Drosophila)
| |
Aliases
for BBX gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Bobby Sox Homolog (Drosophila)1 2 | | ARTC12 | | HBP21 2 3 | | Ag Recognized By Treg Cells 12 | | HSPC3391 2 | | HMG Box Transcription Factor BBX2 | | MDS0011 2 | | X 001 Protein2 | | HMG Box-Containing Protein 22 3 | | Bobby Sox Homolog3 |
Export aliases for BBX gene to outside databasesPrevious GC identifers: GC03P103845 GC03P106769 GC03P108523 GC03P108562 GC03P108724 GC03P104615 |
Summaries
for BBX gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: BBX_HUMAN, Q8WY36Function: Transcription factor that is necessary for cell cycle progression from G1 to S phase
Gene Wiki entry for BBX
|
Genomic Views
for BBX gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000003.11 NC_018914.1 NT_005612.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the BBX gene promoter:
E2F-3a E2F-4 Oct-B1 E2F-5 oct-B2 E2F-2 SRY E2F-1 E2F FOXO4
Other transcription factors
Search SABiosciences Chromatin IP Primers for BBX
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat BBX |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3q13.1 Ensembl cytogenetic band: 3q13.12 HGNC cytogenetic band: 3q13.1BBX Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P107241: view genomic region
(about GC identifiers)
Start:
|
107,241,783 bp from pter |
End:
|
107,530,171 bp from pter |
Size:
|
288,389 bases |
Orientation:
|
plus strand |
|
Proteins
for BBX gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: BBX_HUMAN, Q8WY36 (See
protein sequence)Recommended Name: HMG box transcription factor BBX Size: 941 amino acids; 105130 Da
Subcellular location: Nucleus (Probable)
Sequence caution: Sequence=AAI10904.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-Asequence;
Secondary accessions: Q2TAJ1 Q7L3J8 Q7LBY8 Q8NDB0 Q8WY35 Q9H0J6Alternative splicing: 2 isoforms: Q8WY36-1 Q8WY36-2 Explore the universe of human proteins at neXtProt for BBX: NX_Q8WY36
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8WY36
BBX Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (3 alternative transcripts):
NP_001136040.1 NP_001263215.1 NP_064620.2
ENSEMBL proteins: ENSP00000408358 ENSP00000385317 ENSP00000319974 ENSP00000413320 ENSP00000403860 ENSP00000396373 ENSP00000392230 ENSP00000408297 ENSP00000400543 ENSP00000404654 ENSP00000403692 ENSP00000413274 ENSP00000385518 ENSP00000385530 ENSP00000403806 ENSP00000406554 ENSP00000412390 ENSP00000407662 ENSP00000404943 ENSP00000414673 ENSP00000402372 ENSP00000401524
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- |
BBX for ontologies About GeneDecksing
BBX Antibody Products:
Assay Products for BBX: |
Protein
Domains /
Families
for BBX gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
BBX for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8WY36ProtoNet protein and cluster: Q8WY36 UniProtKB/Swiss-Prot: BBX_HUMAN, Q8WY36Similarity: Contains 1 HMG box DNA-binding domain |
Function
for BBX gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: BBX_HUMAN, Q8WY36Function: Transcription factor that is necessary for cell cycle progression from G1 to S phase
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BBX (see all 5)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BBX (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for BBX | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BBX |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BBX |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003677 | DNA binding |
IEA | -- |
BBX for ontologies About GeneDecksing
Animal Models:
5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Bbx):
BBX for phenotypes About GeneDecksing
|
Pathways & Interactions
for BBX gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for BBX
STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)
2 Interacting proteins for BBX (ENSP000003199744) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- |
BBX for ontologies About GeneDecksing
|
Drugs & Compounds
for BBX gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for BBX
Search CenterWatch for drugs/clinical trials and news about BBX
|
Transcripts
for BBX gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for BBX gene (3 alternative transcripts): NM_001142568.2 NM_001276286.1 NM_020235.6 Unigene Cluster for BBX: Bobby sox homolog (Drosophila) Hs.124366 [show with all ESTs]Unigene Representative Sequence: NM_00114256818/27 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 27): ENST00000415149(uc010hpr.3 uc003dwk.4 uc003dwl.4 uc003dwm.4 uc003dwo.4)
ENST00000402543 ENST00000325805 ENST00000474137 ENST00000485939 ENST00000427402
ENST00000416476 ENST00000454540 ENST00000431630 ENST00000449335 ENST00000456817
ENST00000458458 ENST00000437908 ENST00000456419 ENST00000402163 ENST00000406780(uc010hps.1)
ENST00000413213 ENST00000449271
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BBX (see all 5)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BBX (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): BBX (NM_020235) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for BBX | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BBX |
Additional cDNA sequence: AF052174.1 AF161457.1 AF168718.1 AF276948.1 AF276949.1 AF283775.2 AF454941.1 AF454942.1 AK025944.1 AK026082.1 AK057010.1 AK130627.1 AK291757.1 AK307668.1 AK314434.1 AL136769.1 AL834307.1 AY527413.1 BC012837.1 BC110903.1 BC131718.1 22 DOTS entries: DT.95198155 DT.101982460 DT.445965 DT.448789 DT.97859057 DT.97809187 DT.101955606 DT.91749119 DT.99936899 DT.214889 DT.75112285 DT.92438454 DT.95198150 DT.120907146 DT.120907155 DT.120907175 DT.120907216 DT.86858826 DT.92438447 DT.91650632 DT.92438444 DT.95193096 24/378 AceView cDNA sequences (see all 378): BE670770 BQ775790 BQ013018 H89218 AW131884 H99053 AI075868 BF061394 AA621562 AI559937 BF971127 BF111635 H88497 H98495 AI275914 CK824519 AW305062 CN479574 AI654625 AI637878 AI637921 CF594287 AA495961 AI373913
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for BBX About this scheme
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 |
|---|
|
| SP1: | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for BBX
|
Expression
for BBX gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| BBX expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTAAAGTACT
About this image
See BBX Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for BBX
SOURCE GeneReport for Unigene cluster: Hs.124366
SABiosciences Custom PCR Arrays for BBX
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BBX
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat BBX | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat BBX | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat BBX | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BBX |
Orthologs
for BBX gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for BBX gene from 6/17 species (see all 17) About this table
ENSEMBL Gene Tree for BBX (if available)
TreeFam Gene Tree for BBX (if available) |
Paralogs
for BBX gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for BBX gene
- CIC2
3 SIMAP similar genes for BBX using alignment to 21 protein entries: BBX_HUMAN (see all proteins):CIC SRY soxB
BBX for paralogs About GeneDecksing
|
Genomic Variants
for BBX gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for BBX (107241783 - 107491783 bp, first 250kb of BBX)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 4 variations for BBX
4 CNVs: 91463 4349 91462 63549 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing BBX |
|
Disorders
/ Diseases
for BBX gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
BBX for disorders About GeneDecksing
2  diseases for BBX: About MalaCardslymphocytic gastritis gastritis
1 disease from the University of Copenhagen DISEASES database for BBX:Lymphocytic gastritis Human Genome Epidemiology (HuGE) Navigator: BBX (1 document)
Export disorders for BBX gene to outside databases
|
Publications
for BBX gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for BBX gene, integrated from 9 sources (see all 20):
(articles sorted by number of sources associating them with BBX) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- HBP2: a new mammalian protein that complements the fission yeast MBF transcription complex. (PubMed id 11680820)1, 2, 3 Sanchez-Diaz A.... Moreno S. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2 Wiemann S.... Poustka A. (2001)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Comparative proteomic analysis identifies a role for S UMO in protein quality control. (PubMed id 21693764)1 Tatham M.H....Hay R.T. (2011)
- Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
- Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays. (PubMed id 19953087)1 Persaud A....Rotin D. (2009)
- System-wide changes to SUMO modifications in response to heat shock. (PubMed id 19471022)1 Golebiowski F....Hay R.T. (2009)
- Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
|
External Searches for BBX gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing BBX gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing BBX gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing BBX gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for BBX | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for BBX gene:
Search GeneIP for patents involving BBX
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for BBX gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | Browse OriGene shRNA RFPs | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for BBX | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for BBX | | | OriGene Protein Over-expression Lysate for BBX | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for BBX | | OriGene 3'-UTR Clone for BBX | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for BBX | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for BBX | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| |
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| |  |  |  |  | | | | |
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 | | | BBX Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for BBX |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat BBX |
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