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Aliases for BBX Gene

Aliases for BBX Gene

  • BBX, HMG-Box Containing 2 3 5
  • HMG Box-Containing Protein 2 3 4
  • Bobby Sox Homolog 3 4
  • X 001 Protein 2 3
  • HBP2 3 4
  • HMG Box Transcription Factor BBX 3
  • Bobby Sox Homolog (Drosophila) 2
  • Ag Recognized By Treg Cells 1 3
  • HSPC339 3
  • MDS001 3
  • ARTC1 3

External Ids for BBX Gene

Previous GeneCards Identifiers for BBX Gene

  • GC03P103845
  • GC03P106769
  • GC03P108523
  • GC03P108562
  • GC03P108724
  • GC03P107241
  • GC03P104615

Summaries for BBX Gene

GeneCards Summary for BBX Gene

BBX (BBX, HMG-Box Containing) is a Protein Coding gene. An important paralog of this gene is CIC.

UniProtKB/Swiss-Prot for BBX Gene

  • Transcription factor that is necessary for cell cycle progression from G1 to S phase.

Gene Wiki entry for BBX Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BBX Gene

Genomics for BBX Gene

Regulatory Elements for BBX Gene

Enhancers for BBX Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F107428 1 FANTOM5 ENCODE 11.9 -92.4 -92382 4.4 PKNOX1 SIN3A GLI4 ZNF2 ETS1 YY1 GLIS2 ZNF143 ZNF202 ZNF263 BBX CCDC54 LINC01990 LOC101929579
GH03F107432 1 ENCODE 11.9 -90.0 -90048 0.2 PKNOX1 ZBTB20 BBX CCDC54 LINC01990
GH03F107240 0.9 ENCODE 11.5 -281.9 -281850 1.9 CTCF MXI1 TAF1 MAX SIN3A E2F1 GLIS2 ZBTB48 EGR1 POLR2A BBX CCDC54 DUBR GC03P107248
GH03F107235 0.9 Ensembl ENCODE 11.5 -286.6 -286553 2.4 PKNOX1 ARID4B ZNF2 RAD21 RFX5 GTF3C2 ZNF366 SCRT2 ZNF143 ZNF654 BBX CCDC54 LINC00882 LOC344593
GH03F107285 0.2 ENCODE 10.8 -237.5 -237538 0.2 GATA3 BCL11A GLIS1 POU5F1 BBX GC03M107248 LOC649024
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around BBX on UCSC Golden Path with GeneCards custom track

Promoters for BBX Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001370221 1464 4001 HDGF PKNOX1 ATF1 WRNIP1 ARID4B SIN3A FEZF1 ZNF48 ZNF2 YY1

Genomic Location for BBX Gene

Chromosome:
3
Start:
107,522,936 bp from pter
End:
107,811,329 bp from pter
Size:
288,394 bases
Orientation:
Plus strand

Genomic View for BBX Gene

Genes around BBX on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
BBX Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for BBX Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BBX Gene

Proteins for BBX Gene

  • Protein details for BBX Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WY36-BBX_HUMAN
    Recommended name:
    HMG box transcription factor BBX
    Protein Accession:
    Q8WY36
    Secondary Accessions:
    • A2RRM7
    • Q2TAJ1
    • Q7L3J8
    • Q7LBY8
    • Q8NDB0
    • Q8WY35
    • Q9H0J6

    Protein attributes for BBX Gene

    Size:
    941 amino acids
    Molecular mass:
    105130 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI10904.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for BBX Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for BBX Gene

Post-translational modifications for BBX Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Abcam antibodies for BBX

No data available for DME Specific Peptides for BBX Gene

Domains & Families for BBX Gene

Protein Domains for BBX Gene

Suggested Antigen Peptide Sequences for BBX Gene

Graphical View of Domain Structure for InterPro Entry

Q8WY36

UniProtKB/Swiss-Prot:

BBX_HUMAN :
  • Contains 1 HMG box DNA-binding domain.
Domain:
  • Contains 1 HMG box DNA-binding domain.
genes like me logo Genes that share domains with BBX: view

No data available for Gene Families for BBX Gene

Function for BBX Gene

Molecular function for BBX Gene

UniProtKB/Swiss-Prot Function:
Transcription factor that is necessary for cell cycle progression from G1 to S phase.

Gene Ontology (GO) - Molecular Function for BBX Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with BBX: view
genes like me logo Genes that share phenotypes with BBX: view

Animal Models for BBX Gene

MGI Knock Outs for BBX:
  • Bbx tm1a(EUCOMM)Wtsi

Animal Model Products

miRNA for BBX Gene

miRTarBase miRNAs that target BBX

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for BBX Gene

Localization for BBX Gene

Subcellular locations from UniProtKB/Swiss-Prot for BBX Gene

Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BBX Gene COMPARTMENTS Subcellular localization image for BBX gene
Compartment Confidence
nucleus 5
cytosol 3
mitochondrion 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for BBX Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with BBX: view

Pathways & Interactions for BBX Gene

SuperPathways for BBX Gene

No Data Available

Gene Ontology (GO) - Biological Process for BBX Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0060348 bone development IEA --
genes like me logo Genes that share ontologies with BBX: view

No data available for Pathways by source and SIGNOR curated interactions for BBX Gene

Transcripts for BBX Gene

Unigene Clusters for BBX Gene

Bobby sox homolog (Drosophila):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BBX Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19
SP1: -
SP2:
SP3: -
SP4:

Relevant External Links for BBX Gene

GeneLoc Exon Structure for
BBX
ECgene alternative splicing isoforms for
BBX

Expression for BBX Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for BBX Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for BBX Gene

This gene is overexpressed in Peripheral blood mononuclear cells (24.0), Lung (14.8), Blymphocyte (13.3), and Heart (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for BBX Gene



Protein tissue co-expression partners for BBX Gene

NURSA nuclear receptor signaling pathways regulating expression of BBX Gene:

BBX

SOURCE GeneReport for Unigene cluster for BBX Gene:

Hs.124366
genes like me logo Genes that share expression patterns with BBX: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BBX Gene

Orthologs for BBX Gene

This gene was present in the common ancestor of animals.

Orthologs for BBX Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BBX 34 35
  • 99.54 (n)
dog
(Canis familiaris)
Mammalia BBX 34 35
  • 93.48 (n)
cow
(Bos Taurus)
Mammalia BBX 34 35
  • 92.88 (n)
mouse
(Mus musculus)
Mammalia Bbx 34 16 35
  • 88.31 (n)
rat
(Rattus norvegicus)
Mammalia Bbx 34
  • 87.19 (n)
oppossum
(Monodelphis domestica)
Mammalia BBX 35
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia BBX 35
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves BBX 34 35
  • 75.51 (n)
lizard
(Anolis carolinensis)
Reptilia BBX 35
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bbx 34
  • 65.3 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100005540 34
  • 60.52 (n)
BBX 35
  • 48 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta bbx 35
  • 8 (a)
ManyToMany
cic 35
  • 6 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea gei-3 35
  • 8 (a)
OneToMany
Species where no ortholog for BBX was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for BBX Gene

ENSEMBL:
Gene Tree for BBX (if available)
TreeFam:
Gene Tree for BBX (if available)

Paralogs for BBX Gene

Variants for BBX Gene

Sequence variations from dbSNP and Humsavar for BBX Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10084669 -- 107,755,870(+) CATTG(C/T)TAAAG intron-variant
rs10212337 -- 107,764,340(+) AATCA(C/G)AATGC intron-variant
rs1021502 -- 107,736,388(+) CTATT(A/C)AATAG intron-variant
rs1021503 -- 107,682,816(-) ACTTG(C/T)TCAAA intron-variant
rs1021504 -- 107,682,758(-) TTTTG(C/T)CTGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for BBX Gene

Variant ID Type Subtype PubMed ID
esv2656585 CNV deletion 23128226
esv2670666 CNV deletion 23128226
esv2673634 CNV deletion 23128226
esv27545 CNV loss 19812545
esv3597310 CNV loss 21293372
esv3597311 CNV loss 21293372
esv3597312 CNV loss 21293372
esv3597314 CNV loss 21293372
nsv1011158 CNV gain 25217958
nsv473623 CNV novel sequence insertion 20440878
nsv477970 CNV novel sequence insertion 20440878
nsv591266 CNV gain 21841781
nsv829654 CNV gain 17160897
nsv829655 CNV gain 17160897

Variation tolerance for BBX Gene

Residual Variation Intolerance Score: 50.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.94; 79.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for BBX Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
BBX

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BBX Gene

Disorders for BBX Gene

Relevant External Links for BBX

Genetic Association Database (GAD)
BBX
Human Genome Epidemiology (HuGE) Navigator
BBX
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
BBX

No disorders were found for BBX Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for BBX Gene

Publications for BBX Gene

  1. HBP2: a new mammalian protein that complements the fission yeast MBF transcription complex. (PMID: 11680820) Sanchez-Diaz A. … Moreno S. (Curr. Genet. 2001) 2 3 4 64
  2. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 46 64
  3. Genome-wide and candidate gene association study of cigarette smoking behaviors. (PMID: 19247474) Caporaso N. … Bergen A.W. (PLoS ONE 2009) 3 46 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 64

Products for BBX Gene

Sources for BBX Gene

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