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Aliases for BBS10 Gene

Aliases for BBS10 Gene

  • Bardet-Biedl Syndrome 10 2 3
  • C12orf58 3 4 6
  • Chromosome 12 Open Reading Frame 58 2
  • Bardet-Biedl Syndrome 10 Protein 3
  • FLJ23560 6

External Ids for BBS10 Gene

Previous HGNC Symbols for BBS10 Gene

  • C12orf58

Previous GeneCards Identifiers for BBS10 Gene

  • GC12M075262
  • GC12M076738
  • GC12M073790

Summaries for BBS10 Gene

Entrez Gene Summary for BBS10 Gene

  • This gene is a member of the Bardet-Biedl syndrome (BBS) gene family. Bardet-Biedl syndrome is an autosomal recessive disorder characterized by progressive retinal degeneration, obesity, polydactyly, renal malformation and mental retardation. The proteins encoded by BBS gene family members are structurally diverse and the similar phenotypes exhibited by mutations in BBS gene family members is likely due to their shared roles in cilia formation and function. Many BBS proteins localize to the basal bodies, ciliary axonemes, and pericentriolar regions of cells. BBS proteins may also be involved in intracellular trafficking via microtubule-related transport. The protein encoded by this gene is likely not a ciliary protein but rather has distant sequence homology to type II chaperonins. As a molecular chaperone, this protein may affect the folding or stability of other ciliary or basal body proteins. Inhibition of this protein's expression impairs ciliogenesis in preadipocytes. Mutations in this gene cause Bardet-Biedl syndrome type 10. [provided by RefSeq, Jan 2010]

GeneCards Summary for BBS10 Gene

BBS10 (Bardet-Biedl Syndrome 10) is a Protein Coding gene. Diseases associated with BBS10 include bardet-biedl syndrome 10 and bbs10-related bardet-biedl syndrome.

UniProtKB/Swiss-Prot for BBS10 Gene

  • Probable molecular chaperone. Assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Involved in adipogenic differentiation.

Gene Wiki entry for BBS10 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for BBS10 Gene

Genomics for BBS10 Gene

Regulatory Elements for BBS10 Gene

Genomic Location for BBS10 Gene

Start:
76,344,474 bp from pter
End:
76,348,906 bp from pter
Size:
4,433 bases
Orientation:
Minus strand

Genomic View for BBS10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for BBS10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for BBS10 Gene

Proteins for BBS10 Gene

  • Protein details for BBS10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAM1-BBS10_HUMAN
    Recommended name:
    Bardet-Biedl syndrome 10 protein
    Protein Accession:
    Q8TAM1
    Secondary Accessions:
    • Q96CW2
    • Q9H5D2

    Protein attributes for BBS10 Gene

    Size:
    723 amino acids
    Molecular mass:
    80838 Da
    Quaternary structure:
    • Component of the BBS/CCT complex composed at least of MKKS, BBS10, BBS12, TCP1, CCT2, CCT3, CCT4, CCT5 AND CCT8.
    Miscellaneous:
    • Adipocytes derived from BBS-patients dermal fibroblasts in culture exhibit higher propensity for fat accumulation when compared to controls. This strongly suggests that a peripheral primary dysfunction of adipogenesis participates to the pathogenesis of obesity in BBS
    SequenceCaution:
    • Sequence=AAH13795.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB15695.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for BBS10 Gene

Proteomics data for BBS10 Gene at MOPED

Post-translational modifications for BBS10 Gene

  • Ubiquitination at Lys40 and Lys542
  • Modification sites at PhosphoSitePlus

Other Protein References for BBS10 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for BBS10 Gene

Domains for BBS10 Gene

Gene Families for BBS10 Gene

HGNC:
  • CHAP :Heat Shock Proteins / Chaperonins

Protein Domains for BBS10 Gene

Suggested Antigen Peptide Sequences for BBS10 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TAM1

UniProtKB/Swiss-Prot:

BBS10_HUMAN :
  • Q8TAM1
Family:
  • Belongs to the TCP-1 chaperonin family.
genes like me logo Genes that share domains with BBS10: view

Function for BBS10 Gene

Molecular function for BBS10 Gene

UniProtKB/Swiss-Prot Function: Probable molecular chaperone. Assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Involved in adipogenic differentiation.

Gene Ontology (GO) - Molecular Function for BBS10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001103 RNA polymerase II repressing transcription factor binding IPI 22302990
GO:0005515 protein binding IPI 20080638
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with BBS10: view

Animal Model Products

CRISPR Products

miRNA for BBS10 Gene

miRTarBase miRNAs that target BBS10

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BBS10

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for BBS10 Gene

Localization for BBS10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for BBS10 Gene

Cell projection, cilium. Note=Located within the basal body of the primary cilium of differentiating preadipocytes.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for BBS10 Gene COMPARTMENTS Subcellular localization image for BBS10 gene
Compartment Confidence
cytosol 1
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for BBS10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005929 cilium IEA --
GO:0042995 cell projection --
genes like me logo Genes that share ontologies with BBS10: view

Pathways for BBS10 Gene

SuperPathways for BBS10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for BBS10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001895 retina homeostasis IMP 17980398
GO:0007601 visual perception IEA --
GO:0035058 nonmotile primary cilium assembly IMP 17980398
GO:0043254 regulation of protein complex assembly IMP 22500027
GO:0044267 cellular protein metabolic process --
genes like me logo Genes that share ontologies with BBS10: view

No data available for Pathways by source for BBS10 Gene

Transcripts for BBS10 Gene

mRNA/cDNA for BBS10 Gene

(58) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for BBS10 Gene

Bardet-Biedl syndrome 10:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for BBS10

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for BBS10

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for BBS10 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b
SP1:
SP2:

Relevant External Links for BBS10 Gene

GeneLoc Exon Structure for
BBS10
ECgene alternative splicing isoforms for
BBS10

Expression for BBS10 Gene

mRNA expression in normal human tissues for BBS10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for BBS10 Gene

SOURCE GeneReport for Unigene cluster for BBS10 Gene Hs.96322

genes like me logo Genes that share expressions with BBS10: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for BBS10 Gene

Orthologs for BBS10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for BBS10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia BBS10 35
  • 99.68 (n)
  • 99.17 (a)
BBS10 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia BBS10 35
  • 82.59 (n)
  • 72.73 (a)
BBS10 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia BBS10 35
  • 81.34 (n)
  • 73.14 (a)
BBS10 36
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Bbs10 35
  • 78.29 (n)
  • 68.07 (a)
Bbs10 16
Bbs10 36
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia BBS10 36
  • 55 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Bbs10 35
  • 76.47 (n)
  • 67.23 (a)
chicken
(Gallus gallus)
Aves BBS10 35
  • 47.54 (n)
  • 37.17 (a)
lizard
(Anolis carolinensis)
Reptilia BBS10 36
  • 37 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia bbs10 35
  • 55.23 (n)
  • 42.12 (a)
zebrafish
(Danio rerio)
Actinopterygii bbs10 35
  • 47.61 (n)
  • 34.34 (a)
bbs10 36
  • 29 (a)
OneToOne
Species with no ortholog for BBS10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for BBS10 Gene

ENSEMBL:
Gene Tree for BBS10 (if available)
TreeFam:
Gene Tree for BBS10 (if available)

Paralogs for BBS10 Gene

No data available for Paralogs for BBS10 Gene

Variants for BBS10 Gene

Sequence variations from dbSNP and Humsavar for BBS10 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs3087711 -- 76,344,762(+) GTTTT(A/G)TTCAA utr-variant-3-prime
rs4761421 -- 76,349,081(+) GACTC(C/T)CGCTC upstream-variant-2KB
rs7956422 -- 76,350,084(+) ttgca(A/G)tgagc upstream-variant-2KB
rs10777942 -- 76,349,498(+) ccagg(C/T)tggag upstream-variant-2KB
rs10777947 -- 76,350,670(+) TGCAA(C/T)CTGTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for BBS10 Gene

Variant ID Type Subtype PubMed ID
nsv520195 CNV Gain 19592680

Relevant External Links for BBS10 Gene

HapMap Linkage Disequilibrium report
BBS10
Human Gene Mutation Database (HGMD)
BBS10
Locus Specific Mutation Databases (LSDB)
BBS10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for BBS10 Gene

Disorders for BBS10 Gene

(1) OMIM Diseases for BBS10 Gene (610148)

UniProtKB/Swiss-Prot

BBS10_HUMAN
  • Bardet-Biedl syndrome 10 (BBS10) [MIM:615987]: A syndrome characterized by usually severe pigmentary retinopathy, early-onset obesity, polydactyly, hypogenitalism, renal malformation and mental retardation. Secondary features include diabetes mellitus, hypertension and congenital heart disease. Bardet-Biedl syndrome inheritance is autosomal recessive, but three mutated alleles (two at one locus, and a third at a second locus) may be required for clinical manifestation of some forms of the disease. {ECO:0000269 PubMed:16582908, ECO:0000269 PubMed:20120035, ECO:0000269 PubMed:21344540, ECO:0000269 PubMed:23219996}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(2) University of Copenhagen DISEASES for BBS10 Gene

Relevant External Links for BBS10

GeneTests
BBS10
GeneReviews
BBS10
Genetic Association Database (GAD)
BBS10
Human Genome Epidemiology (HuGE) Navigator
BBS10
genes like me logo Genes that share disorders with BBS10: view

Publications for BBS10 Gene

  1. BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus. (PMID: 16582908) Stoetzel C. … Dollfus H. (Nat. Genet. 2006) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Simultaneous mutation detection in 90 retinal disease genes in multiple patients using a custom-designed 300-kb retinal resequencing chip. (PMID: 20801516) Booij J.C. … Florijn R.J. (Ophthalmology 2011) 3 48
  5. Transient ciliogenesis involving Bardet-Biedl syndrome proteins is a fundamental characteristic of adipogenic differentiation. (PMID: 19190184) Marion V. … Dollfus H. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 4

Products for BBS10 Gene

Sources for BBS10 Gene

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